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Genes within 1Mb (chr12:96397168:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -3312 sc-eQTL 6.01e-01 -0.0345 0.0659 0.85 B L1
ENSG00000111142 METAP2 923648 sc-eQTL 9.33e-01 0.00789 0.0933 0.85 B L1
ENSG00000111144 LTA4H 353648 sc-eQTL 3.15e-01 0.0824 0.0817 0.85 B L1
ENSG00000111145 ELK3 202793 sc-eQTL 2.79e-02 -0.191 0.0862 0.85 B L1
ENSG00000136014 USP44 845692 sc-eQTL 6.71e-01 0.0457 0.108 0.85 B L1
ENSG00000139343 SNRPF 538240 sc-eQTL 6.48e-01 0.0362 0.0792 0.85 B L1
ENSG00000139350 NEDD1 -510055 sc-eQTL 7.97e-01 0.0297 0.116 0.85 B L1
ENSG00000059758 CDK17 -3312 sc-eQTL 6.22e-01 -0.0265 0.0537 0.85 CD4T L1
ENSG00000111142 METAP2 923648 sc-eQTL 4.87e-01 0.0522 0.0748 0.85 CD4T L1
ENSG00000111144 LTA4H 353648 sc-eQTL 7.36e-01 -0.0249 0.0737 0.85 CD4T L1
ENSG00000111145 ELK3 202793 sc-eQTL 6.75e-01 -0.0335 0.0799 0.85 CD4T L1
ENSG00000136014 USP44 845692 sc-eQTL 2.53e-01 -0.13 0.114 0.85 CD4T L1
ENSG00000139343 SNRPF 538240 sc-eQTL 9.27e-01 0.00637 0.0698 0.85 CD4T L1
ENSG00000139350 NEDD1 -510055 sc-eQTL 3.29e-01 -0.084 0.0858 0.85 CD4T L1
ENSG00000059758 CDK17 -3312 sc-eQTL 1.93e-02 -0.131 0.0555 0.85 CD8T L1
ENSG00000111142 METAP2 923648 sc-eQTL 7.90e-01 -0.0242 0.0908 0.85 CD8T L1
ENSG00000111144 LTA4H 353648 sc-eQTL 4.38e-01 -0.0468 0.0603 0.85 CD8T L1
ENSG00000111145 ELK3 202793 sc-eQTL 1.91e-01 -0.119 0.0905 0.85 CD8T L1
ENSG00000136014 USP44 845692 sc-eQTL 2.82e-01 -0.111 0.103 0.85 CD8T L1
ENSG00000139343 SNRPF 538240 sc-eQTL 3.75e-01 0.0661 0.0744 0.85 CD8T L1
ENSG00000139350 NEDD1 -510055 sc-eQTL 7.78e-03 -0.262 0.0974 0.85 CD8T L1
ENSG00000059758 CDK17 -3312 sc-eQTL 5.98e-01 0.0535 0.101 0.851 DC L1
ENSG00000084110 HAL 400803 sc-eQTL 2.65e-01 0.129 0.115 0.851 DC L1
ENSG00000111142 METAP2 923648 sc-eQTL 9.79e-01 0.00336 0.127 0.851 DC L1
ENSG00000111144 LTA4H 353648 sc-eQTL 5.32e-01 0.0591 0.0945 0.851 DC L1
ENSG00000111145 ELK3 202793 sc-eQTL 2.39e-01 0.136 0.115 0.851 DC L1
ENSG00000139343 SNRPF 538240 sc-eQTL 1.49e-01 0.139 0.0958 0.851 DC L1
ENSG00000139350 NEDD1 -510055 sc-eQTL 8.69e-01 0.0204 0.124 0.851 DC L1
ENSG00000257715 AC007298.1 371845 sc-eQTL 5.43e-01 -0.0679 0.111 0.851 DC L1
ENSG00000059758 CDK17 -3312 sc-eQTL 3.53e-03 -0.236 0.08 0.85 Mono L1
ENSG00000084110 HAL 400803 sc-eQTL 7.00e-02 0.186 0.102 0.85 Mono L1
ENSG00000111142 METAP2 923648 sc-eQTL 1.70e-01 0.122 0.0885 0.85 Mono L1
ENSG00000111144 LTA4H 353648 sc-eQTL 2.88e-01 0.123 0.116 0.85 Mono L1
ENSG00000111145 ELK3 202793 sc-eQTL 3.51e-02 -0.164 0.0772 0.85 Mono L1
ENSG00000139343 SNRPF 538240 sc-eQTL 5.81e-01 -0.0407 0.0735 0.85 Mono L1
ENSG00000139350 NEDD1 -510055 sc-eQTL 6.16e-01 -0.0566 0.113 0.85 Mono L1
ENSG00000257715 AC007298.1 371845 sc-eQTL 9.01e-02 0.185 0.109 0.85 Mono L1
ENSG00000059758 CDK17 -3312 sc-eQTL 5.86e-02 -0.114 0.06 0.852 NK L1
ENSG00000111142 METAP2 923648 sc-eQTL 2.99e-01 0.093 0.0893 0.852 NK L1
ENSG00000111144 LTA4H 353648 sc-eQTL 4.07e-02 -0.209 0.102 0.852 NK L1
ENSG00000111145 ELK3 202793 sc-eQTL 2.71e-01 -0.107 0.0971 0.852 NK L1
ENSG00000139343 SNRPF 538240 sc-eQTL 8.40e-01 -0.0164 0.0808 0.852 NK L1
ENSG00000139350 NEDD1 -510055 sc-eQTL 1.45e-01 -0.149 0.102 0.852 NK L1
ENSG00000059758 CDK17 -3312 sc-eQTL 1.40e-01 -0.0745 0.0503 0.85 Other_T L1
ENSG00000074527 NTN4 606016 sc-eQTL 4.64e-01 0.0684 0.0933 0.85 Other_T L1
ENSG00000111142 METAP2 923648 sc-eQTL 6.65e-01 0.0418 0.0964 0.85 Other_T L1
ENSG00000111144 LTA4H 353648 sc-eQTL 6.63e-02 -0.193 0.105 0.85 Other_T L1
ENSG00000111145 ELK3 202793 sc-eQTL 7.86e-01 -0.0224 0.0824 0.85 Other_T L1
ENSG00000139343 SNRPF 538240 sc-eQTL 7.28e-01 -0.0267 0.0766 0.85 Other_T L1
ENSG00000139350 NEDD1 -510055 sc-eQTL 8.42e-01 -0.0232 0.117 0.85 Other_T L1
ENSG00000188596 CFAP54 -92403 sc-eQTL 2.64e-01 -0.135 0.12 0.85 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -3312 sc-eQTL 8.96e-01 -0.0152 0.117 0.852 B_Activated L2
ENSG00000111142 METAP2 923648 sc-eQTL 6.40e-01 0.0689 0.147 0.852 B_Activated L2
ENSG00000111144 LTA4H 353648 sc-eQTL 7.52e-01 0.0419 0.132 0.852 B_Activated L2
ENSG00000111145 ELK3 202793 sc-eQTL 2.64e-01 -0.156 0.14 0.852 B_Activated L2
ENSG00000136014 USP44 845692 sc-eQTL 3.65e-01 -0.0975 0.107 0.852 B_Activated L2
ENSG00000139343 SNRPF 538240 sc-eQTL 1.37e-01 -0.196 0.131 0.852 B_Activated L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 5.09e-01 0.0913 0.138 0.852 B_Activated L2
ENSG00000059758 CDK17 -3312 sc-eQTL 4.09e-01 -0.0836 0.101 0.85 B_Intermediate L2
ENSG00000111142 METAP2 923648 sc-eQTL 7.05e-01 -0.0441 0.116 0.85 B_Intermediate L2
ENSG00000111144 LTA4H 353648 sc-eQTL 8.85e-01 0.0142 0.0981 0.85 B_Intermediate L2
ENSG00000111145 ELK3 202793 sc-eQTL 7.82e-01 -0.0307 0.111 0.85 B_Intermediate L2
ENSG00000136014 USP44 845692 sc-eQTL 9.25e-01 -0.0123 0.13 0.85 B_Intermediate L2
ENSG00000139343 SNRPF 538240 sc-eQTL 7.01e-01 0.0423 0.11 0.85 B_Intermediate L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 9.69e-01 0.0051 0.129 0.85 B_Intermediate L2
ENSG00000059758 CDK17 -3312 sc-eQTL 6.99e-01 0.037 0.0954 0.849 B_Memory L2
ENSG00000111142 METAP2 923648 sc-eQTL 5.43e-01 0.0755 0.124 0.849 B_Memory L2
ENSG00000111144 LTA4H 353648 sc-eQTL 3.46e-01 0.104 0.11 0.849 B_Memory L2
ENSG00000111145 ELK3 202793 sc-eQTL 9.70e-01 -0.00412 0.108 0.849 B_Memory L2
ENSG00000136014 USP44 845692 sc-eQTL 2.68e-01 -0.132 0.118 0.849 B_Memory L2
ENSG00000139343 SNRPF 538240 sc-eQTL 9.63e-01 0.00529 0.115 0.849 B_Memory L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 1.81e-02 -0.298 0.125 0.849 B_Memory L2
ENSG00000059758 CDK17 -3312 sc-eQTL 5.55e-01 -0.0479 0.081 0.85 B_Naive1 L2
ENSG00000111142 METAP2 923648 sc-eQTL 8.44e-01 0.0206 0.105 0.85 B_Naive1 L2
ENSG00000111144 LTA4H 353648 sc-eQTL 1.41e-01 0.125 0.0845 0.85 B_Naive1 L2
ENSG00000111145 ELK3 202793 sc-eQTL 1.66e-01 -0.139 0.0999 0.85 B_Naive1 L2
ENSG00000136014 USP44 845692 sc-eQTL 4.97e-01 -0.0858 0.126 0.85 B_Naive1 L2
ENSG00000139343 SNRPF 538240 sc-eQTL 2.42e-01 0.114 0.0973 0.85 B_Naive1 L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 7.91e-01 0.0332 0.125 0.85 B_Naive1 L2
ENSG00000059758 CDK17 -3312 sc-eQTL 5.56e-01 -0.0597 0.101 0.85 B_Naive2 L2
ENSG00000111142 METAP2 923648 sc-eQTL 5.50e-01 -0.0732 0.122 0.85 B_Naive2 L2
ENSG00000111144 LTA4H 353648 sc-eQTL 9.22e-01 -0.00941 0.096 0.85 B_Naive2 L2
ENSG00000111145 ELK3 202793 sc-eQTL 2.50e-01 -0.13 0.113 0.85 B_Naive2 L2
ENSG00000136014 USP44 845692 sc-eQTL 3.97e-01 -0.104 0.122 0.85 B_Naive2 L2
ENSG00000139343 SNRPF 538240 sc-eQTL 4.40e-01 0.0868 0.112 0.85 B_Naive2 L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 4.02e-01 0.112 0.133 0.85 B_Naive2 L2
ENSG00000059758 CDK17 -3312 sc-eQTL 2.48e-01 -0.108 0.0934 0.848 CD4_CTL L2
ENSG00000111142 METAP2 923648 sc-eQTL 4.04e-01 -0.112 0.134 0.848 CD4_CTL L2
ENSG00000111144 LTA4H 353648 sc-eQTL 1.03e-02 -0.337 0.13 0.848 CD4_CTL L2
ENSG00000111145 ELK3 202793 sc-eQTL 9.11e-01 0.015 0.134 0.848 CD4_CTL L2
ENSG00000136014 USP44 845692 sc-eQTL 4.96e-01 0.0727 0.107 0.848 CD4_CTL L2
ENSG00000139343 SNRPF 538240 sc-eQTL 6.06e-01 -0.06 0.116 0.848 CD4_CTL L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 6.54e-01 0.0603 0.134 0.848 CD4_CTL L2
ENSG00000059758 CDK17 -3312 sc-eQTL 9.29e-01 0.00531 0.0593 0.85 CD4_Naive L2
ENSG00000111142 METAP2 923648 sc-eQTL 4.58e-01 0.0635 0.0854 0.85 CD4_Naive L2
ENSG00000111144 LTA4H 353648 sc-eQTL 9.81e-01 0.002 0.0858 0.85 CD4_Naive L2
ENSG00000111145 ELK3 202793 sc-eQTL 4.72e-01 -0.0617 0.0857 0.85 CD4_Naive L2
ENSG00000136014 USP44 845692 sc-eQTL 5.42e-01 -0.0733 0.12 0.85 CD4_Naive L2
ENSG00000139343 SNRPF 538240 sc-eQTL 5.14e-01 0.0497 0.0762 0.85 CD4_Naive L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 1.32e-01 -0.141 0.0934 0.85 CD4_Naive L2
ENSG00000059758 CDK17 -3312 sc-eQTL 1.58e-01 -0.0814 0.0574 0.85 CD4_TCM L2
ENSG00000111142 METAP2 923648 sc-eQTL 7.00e-01 -0.0379 0.0982 0.85 CD4_TCM L2
ENSG00000111144 LTA4H 353648 sc-eQTL 4.42e-01 -0.0752 0.0977 0.85 CD4_TCM L2
ENSG00000111145 ELK3 202793 sc-eQTL 1.30e-01 -0.146 0.0957 0.85 CD4_TCM L2
ENSG00000136014 USP44 845692 sc-eQTL 5.29e-01 -0.0838 0.133 0.85 CD4_TCM L2
ENSG00000139343 SNRPF 538240 sc-eQTL 9.77e-01 -0.00225 0.079 0.85 CD4_TCM L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 3.79e-01 0.095 0.108 0.85 CD4_TCM L2
ENSG00000059758 CDK17 -3312 sc-eQTL 5.94e-01 -0.0379 0.071 0.85 CD4_TEM L2
ENSG00000111142 METAP2 923648 sc-eQTL 3.29e-01 -0.116 0.119 0.85 CD4_TEM L2
ENSG00000111144 LTA4H 353648 sc-eQTL 3.45e-01 -0.104 0.11 0.85 CD4_TEM L2
ENSG00000111145 ELK3 202793 sc-eQTL 7.57e-01 -0.0316 0.102 0.85 CD4_TEM L2
ENSG00000136014 USP44 845692 sc-eQTL 8.74e-01 -0.0198 0.125 0.85 CD4_TEM L2
ENSG00000139343 SNRPF 538240 sc-eQTL 5.39e-01 -0.0657 0.107 0.85 CD4_TEM L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 1.70e-01 -0.173 0.126 0.85 CD4_TEM L2
ENSG00000059758 CDK17 -3312 sc-eQTL 3.43e-03 -0.198 0.0669 0.85 CD8_CTL L2
ENSG00000111142 METAP2 923648 sc-eQTL 5.38e-01 -0.0726 0.118 0.85 CD8_CTL L2
ENSG00000111144 LTA4H 353648 sc-eQTL 2.34e-01 -0.147 0.123 0.85 CD8_CTL L2
ENSG00000111145 ELK3 202793 sc-eQTL 2.12e-01 -0.14 0.112 0.85 CD8_CTL L2
ENSG00000136014 USP44 845692 sc-eQTL 4.64e-01 0.0916 0.125 0.85 CD8_CTL L2
ENSG00000139343 SNRPF 538240 sc-eQTL 9.56e-01 -0.00572 0.103 0.85 CD8_CTL L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 7.74e-01 0.0332 0.116 0.85 CD8_CTL L2
ENSG00000059758 CDK17 -3312 sc-eQTL 2.57e-01 -0.0939 0.0825 0.85 CD8_Naive L2
ENSG00000111142 METAP2 923648 sc-eQTL 3.15e-01 0.11 0.11 0.85 CD8_Naive L2
ENSG00000111144 LTA4H 353648 sc-eQTL 6.33e-01 0.0474 0.0991 0.85 CD8_Naive L2
ENSG00000111145 ELK3 202793 sc-eQTL 6.54e-01 -0.0471 0.105 0.85 CD8_Naive L2
ENSG00000136014 USP44 845692 sc-eQTL 7.87e-01 -0.0298 0.11 0.85 CD8_Naive L2
ENSG00000139343 SNRPF 538240 sc-eQTL 6.69e-01 0.0403 0.0943 0.85 CD8_Naive L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 8.07e-03 -0.295 0.11 0.85 CD8_Naive L2
ENSG00000059758 CDK17 -3312 sc-eQTL 6.55e-01 0.0401 0.0895 0.845 CD8_TCM L2
ENSG00000111142 METAP2 923648 sc-eQTL 4.53e-01 -0.1 0.133 0.845 CD8_TCM L2
ENSG00000111144 LTA4H 353648 sc-eQTL 5.31e-01 0.0824 0.131 0.845 CD8_TCM L2
ENSG00000111145 ELK3 202793 sc-eQTL 4.54e-01 0.0835 0.111 0.845 CD8_TCM L2
ENSG00000136014 USP44 845692 sc-eQTL 2.72e-01 0.133 0.12 0.845 CD8_TCM L2
ENSG00000139343 SNRPF 538240 sc-eQTL 5.45e-01 -0.0778 0.128 0.845 CD8_TCM L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 2.57e-04 -0.452 0.121 0.845 CD8_TCM L2
ENSG00000059758 CDK17 -3312 sc-eQTL 4.55e-01 -0.0835 0.112 0.854 CD8_TEM L2
ENSG00000111142 METAP2 923648 sc-eQTL 5.62e-01 -0.0763 0.131 0.854 CD8_TEM L2
ENSG00000111144 LTA4H 353648 sc-eQTL 9.72e-01 0.00479 0.137 0.854 CD8_TEM L2
ENSG00000111145 ELK3 202793 sc-eQTL 1.70e-01 -0.185 0.134 0.854 CD8_TEM L2
ENSG00000136014 USP44 845692 sc-eQTL 9.22e-01 0.0112 0.115 0.854 CD8_TEM L2
ENSG00000139343 SNRPF 538240 sc-eQTL 8.96e-01 0.0164 0.125 0.854 CD8_TEM L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 2.58e-01 -0.153 0.135 0.854 CD8_TEM L2
ENSG00000059758 CDK17 -3312 sc-eQTL 6.17e-03 -0.202 0.073 0.853 MAIT L2
ENSG00000074527 NTN4 606016 sc-eQTL 2.84e-01 0.107 0.1 0.853 MAIT L2
ENSG00000111142 METAP2 923648 sc-eQTL 5.90e-01 0.0681 0.126 0.853 MAIT L2
ENSG00000111144 LTA4H 353648 sc-eQTL 1.47e-01 -0.166 0.114 0.853 MAIT L2
ENSG00000111145 ELK3 202793 sc-eQTL 5.56e-01 -0.0568 0.0963 0.853 MAIT L2
ENSG00000139343 SNRPF 538240 sc-eQTL 4.57e-01 -0.0831 0.112 0.853 MAIT L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 1.82e-01 -0.167 0.125 0.853 MAIT L2
ENSG00000188596 CFAP54 -92403 sc-eQTL 6.81e-01 -0.0512 0.124 0.853 MAIT L2
ENSG00000059758 CDK17 -3312 sc-eQTL 1.71e-01 -0.105 0.0767 0.847 NK_CD56bright L2
ENSG00000111142 METAP2 923648 sc-eQTL 7.84e-02 0.228 0.129 0.847 NK_CD56bright L2
ENSG00000111144 LTA4H 353648 sc-eQTL 5.70e-01 -0.0648 0.114 0.847 NK_CD56bright L2
ENSG00000111145 ELK3 202793 sc-eQTL 4.53e-01 0.0909 0.121 0.847 NK_CD56bright L2
ENSG00000139343 SNRPF 538240 sc-eQTL 4.57e-01 0.0942 0.126 0.847 NK_CD56bright L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 3.97e-01 -0.108 0.127 0.847 NK_CD56bright L2
ENSG00000059758 CDK17 -3312 sc-eQTL 3.00e-01 -0.0672 0.0647 0.851 NK_CD56dim L2
ENSG00000111142 METAP2 923648 sc-eQTL 4.98e-01 0.0771 0.113 0.851 NK_CD56dim L2
ENSG00000111144 LTA4H 353648 sc-eQTL 6.29e-02 -0.217 0.116 0.851 NK_CD56dim L2
ENSG00000111145 ELK3 202793 sc-eQTL 3.65e-01 -0.0939 0.103 0.851 NK_CD56dim L2
ENSG00000139343 SNRPF 538240 sc-eQTL 5.94e-01 -0.0526 0.0986 0.851 NK_CD56dim L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 7.10e-01 -0.0423 0.114 0.851 NK_CD56dim L2
ENSG00000059758 CDK17 -3312 sc-eQTL 5.44e-02 -0.192 0.0994 0.845 NK_HLA L2
ENSG00000111142 METAP2 923648 sc-eQTL 7.74e-02 0.223 0.125 0.845 NK_HLA L2
ENSG00000111144 LTA4H 353648 sc-eQTL 1.41e-02 -0.321 0.129 0.845 NK_HLA L2
ENSG00000111145 ELK3 202793 sc-eQTL 6.45e-01 -0.0563 0.122 0.845 NK_HLA L2
ENSG00000139343 SNRPF 538240 sc-eQTL 3.17e-01 0.127 0.127 0.845 NK_HLA L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 6.35e-01 -0.0572 0.12 0.845 NK_HLA L2
ENSG00000059758 CDK17 -3312 sc-eQTL 8.31e-02 -0.123 0.0709 0.851 NK_cytokine L2
ENSG00000111142 METAP2 923648 sc-eQTL 9.30e-01 0.0104 0.119 0.851 NK_cytokine L2
ENSG00000111144 LTA4H 353648 sc-eQTL 2.15e-02 -0.276 0.119 0.851 NK_cytokine L2
ENSG00000111145 ELK3 202793 sc-eQTL 4.88e-01 -0.0803 0.115 0.851 NK_cytokine L2
ENSG00000139343 SNRPF 538240 sc-eQTL 6.32e-01 0.0469 0.0978 0.851 NK_cytokine L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 1.24e-01 -0.186 0.12 0.851 NK_cytokine L2
ENSG00000059758 CDK17 -3312 sc-eQTL 8.35e-01 0.0288 0.138 0.852 PB L2
ENSG00000111142 METAP2 923648 sc-eQTL 6.73e-01 0.0682 0.161 0.852 PB L2
ENSG00000111144 LTA4H 353648 sc-eQTL 6.33e-01 -0.0582 0.122 0.852 PB L2
ENSG00000111145 ELK3 202793 sc-eQTL 2.10e-01 -0.195 0.155 0.852 PB L2
ENSG00000136014 USP44 845692 sc-eQTL 1.58e-01 0.204 0.143 0.852 PB L2
ENSG00000139343 SNRPF 538240 sc-eQTL 5.75e-01 -0.0855 0.152 0.852 PB L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 3.06e-01 0.185 0.18 0.852 PB L2
ENSG00000059758 CDK17 -3312 sc-eQTL 8.23e-01 0.0177 0.0793 0.848 Pro_T L2
ENSG00000074527 NTN4 606016 sc-eQTL 3.34e-01 0.086 0.0888 0.848 Pro_T L2
ENSG00000111142 METAP2 923648 sc-eQTL 3.73e-01 -0.0936 0.105 0.848 Pro_T L2
ENSG00000111144 LTA4H 353648 sc-eQTL 5.00e-02 -0.204 0.104 0.848 Pro_T L2
ENSG00000111145 ELK3 202793 sc-eQTL 7.69e-01 0.0373 0.127 0.848 Pro_T L2
ENSG00000139343 SNRPF 538240 sc-eQTL 9.67e-01 0.0033 0.0798 0.848 Pro_T L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 9.95e-01 -0.000672 0.116 0.848 Pro_T L2
ENSG00000188596 CFAP54 -92403 sc-eQTL 9.67e-01 0.0039 0.0938 0.848 Pro_T L2
ENSG00000059758 CDK17 -3312 sc-eQTL 2.15e-01 -0.112 0.0902 0.85 Treg L2
ENSG00000111142 METAP2 923648 sc-eQTL 3.42e-02 0.26 0.122 0.85 Treg L2
ENSG00000111144 LTA4H 353648 sc-eQTL 9.16e-01 -0.012 0.115 0.85 Treg L2
ENSG00000111145 ELK3 202793 sc-eQTL 7.72e-01 -0.0302 0.104 0.85 Treg L2
ENSG00000136014 USP44 845692 sc-eQTL 7.03e-01 0.0446 0.117 0.85 Treg L2
ENSG00000139343 SNRPF 538240 sc-eQTL 4.23e-01 -0.0965 0.12 0.85 Treg L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 6.34e-01 -0.0641 0.134 0.85 Treg L2
ENSG00000059758 CDK17 -3312 sc-eQTL 4.84e-01 -0.0749 0.107 0.846 cDC L2
ENSG00000084110 HAL 400803 sc-eQTL 6.53e-01 -0.05 0.111 0.846 cDC L2
ENSG00000111142 METAP2 923648 sc-eQTL 8.17e-01 -0.0311 0.134 0.846 cDC L2
ENSG00000111144 LTA4H 353648 sc-eQTL 1.36e-01 0.142 0.0946 0.846 cDC L2
ENSG00000111145 ELK3 202793 sc-eQTL 1.54e-01 0.179 0.125 0.846 cDC L2
ENSG00000139343 SNRPF 538240 sc-eQTL 8.97e-01 0.0137 0.105 0.846 cDC L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 3.46e-02 -0.27 0.127 0.846 cDC L2
ENSG00000257715 AC007298.1 371845 sc-eQTL 9.11e-01 -0.0121 0.108 0.846 cDC L2
ENSG00000059758 CDK17 -3312 sc-eQTL 1.25e-03 -0.301 0.0919 0.85 cMono_IL1B L2
ENSG00000084110 HAL 400803 sc-eQTL 1.27e-01 0.157 0.102 0.85 cMono_IL1B L2
ENSG00000111142 METAP2 923648 sc-eQTL 8.58e-01 0.0191 0.107 0.85 cMono_IL1B L2
ENSG00000111144 LTA4H 353648 sc-eQTL 3.29e-01 0.108 0.111 0.85 cMono_IL1B L2
ENSG00000111145 ELK3 202793 sc-eQTL 1.55e-01 -0.122 0.0851 0.85 cMono_IL1B L2
ENSG00000139343 SNRPF 538240 sc-eQTL 2.38e-01 0.104 0.088 0.85 cMono_IL1B L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 7.06e-01 -0.046 0.121 0.85 cMono_IL1B L2
ENSG00000257715 AC007298.1 371845 sc-eQTL 2.08e-02 0.261 0.112 0.85 cMono_IL1B L2
ENSG00000059758 CDK17 -3312 sc-eQTL 2.39e-01 -0.125 0.106 0.85 cMono_S100A L2
ENSG00000084110 HAL 400803 sc-eQTL 2.61e-01 0.134 0.119 0.85 cMono_S100A L2
ENSG00000111142 METAP2 923648 sc-eQTL 1.51e-01 0.173 0.12 0.85 cMono_S100A L2
ENSG00000111144 LTA4H 353648 sc-eQTL 3.23e-01 0.118 0.119 0.85 cMono_S100A L2
ENSG00000111145 ELK3 202793 sc-eQTL 5.88e-02 -0.183 0.0963 0.85 cMono_S100A L2
ENSG00000139343 SNRPF 538240 sc-eQTL 3.17e-01 -0.096 0.0957 0.85 cMono_S100A L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 6.63e-01 -0.0566 0.129 0.85 cMono_S100A L2
ENSG00000257715 AC007298.1 371845 sc-eQTL 1.57e-01 0.172 0.121 0.85 cMono_S100A L2
ENSG00000059758 CDK17 -3312 sc-eQTL 3.62e-01 -0.0943 0.103 0.842 gdT L2
ENSG00000074527 NTN4 606016 sc-eQTL 8.10e-01 -0.0286 0.119 0.842 gdT L2
ENSG00000111142 METAP2 923648 sc-eQTL 8.43e-01 0.0294 0.149 0.842 gdT L2
ENSG00000111144 LTA4H 353648 sc-eQTL 9.22e-01 -0.0152 0.155 0.842 gdT L2
ENSG00000111145 ELK3 202793 sc-eQTL 7.58e-01 -0.0443 0.143 0.842 gdT L2
ENSG00000139343 SNRPF 538240 sc-eQTL 9.60e-01 0.00689 0.138 0.842 gdT L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 9.38e-01 0.0119 0.153 0.842 gdT L2
ENSG00000188596 CFAP54 -92403 sc-eQTL 2.50e-01 0.154 0.133 0.842 gdT L2
ENSG00000059758 CDK17 -3312 sc-eQTL 4.50e-01 -0.0913 0.121 0.851 intMono L2
ENSG00000084110 HAL 400803 sc-eQTL 6.40e-01 -0.0572 0.122 0.851 intMono L2
ENSG00000111142 METAP2 923648 sc-eQTL 1.47e-01 0.2 0.138 0.851 intMono L2
ENSG00000111144 LTA4H 353648 sc-eQTL 5.94e-01 0.0668 0.125 0.851 intMono L2
ENSG00000111145 ELK3 202793 sc-eQTL 2.26e-01 -0.135 0.111 0.851 intMono L2
ENSG00000139343 SNRPF 538240 sc-eQTL 7.82e-01 0.0331 0.119 0.851 intMono L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 9.21e-01 -0.0123 0.124 0.851 intMono L2
ENSG00000257715 AC007298.1 371845 sc-eQTL 1.86e-01 0.165 0.124 0.851 intMono L2
ENSG00000059758 CDK17 -3312 sc-eQTL 6.23e-01 -0.0465 0.0946 0.848 ncMono L2
ENSG00000084110 HAL 400803 sc-eQTL 1.14e-01 0.167 0.105 0.848 ncMono L2
ENSG00000111142 METAP2 923648 sc-eQTL 3.18e-01 0.128 0.127 0.848 ncMono L2
ENSG00000111144 LTA4H 353648 sc-eQTL 1.12e-01 0.187 0.117 0.848 ncMono L2
ENSG00000111145 ELK3 202793 sc-eQTL 1.11e-01 -0.161 0.101 0.848 ncMono L2
ENSG00000139343 SNRPF 538240 sc-eQTL 2.20e-01 -0.127 0.103 0.848 ncMono L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 7.30e-01 -0.0379 0.11 0.848 ncMono L2
ENSG00000257715 AC007298.1 371845 sc-eQTL 1.89e-01 0.165 0.125 0.848 ncMono L2
ENSG00000059758 CDK17 -3312 sc-eQTL 5.78e-01 0.0685 0.123 0.833 pDC L2
ENSG00000084110 HAL 400803 sc-eQTL 8.67e-03 0.27 0.102 0.833 pDC L2
ENSG00000111142 METAP2 923648 sc-eQTL 4.27e-01 0.112 0.14 0.833 pDC L2
ENSG00000111144 LTA4H 353648 sc-eQTL 7.82e-01 -0.0322 0.116 0.833 pDC L2
ENSG00000111145 ELK3 202793 sc-eQTL 8.17e-01 -0.0331 0.142 0.833 pDC L2
ENSG00000139343 SNRPF 538240 sc-eQTL 3.91e-01 0.107 0.124 0.833 pDC L2
ENSG00000139350 NEDD1 -510055 sc-eQTL 1.70e-02 0.325 0.135 0.833 pDC L2
ENSG00000257715 AC007298.1 371845 sc-eQTL 3.48e-01 0.11 0.117 0.833 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -3312 sc-eQTL 7.11e-01 -0.0315 0.0847 0.85 B_Memory LOneK1K
ENSG00000111142 METAP2 923648 sc-eQTL 7.52e-01 0.0372 0.118 0.85 B_Memory LOneK1K
ENSG00000111144 LTA4H 353648 sc-eQTL 1.99e-01 0.113 0.0877 0.85 B_Memory LOneK1K
ENSG00000111145 ELK3 202793 sc-eQTL 5.03e-01 -0.0675 0.1 0.85 B_Memory LOneK1K
ENSG00000136014 USP44 845692 sc-eQTL 9.86e-01 -0.00224 0.125 0.85 B_Memory LOneK1K
ENSG00000139343 SNRPF 538240 sc-eQTL 5.41e-01 0.0596 0.0974 0.85 B_Memory LOneK1K
ENSG00000139350 NEDD1 -510055 sc-eQTL 1.03e-01 -0.208 0.127 0.85 B_Memory LOneK1K
ENSG00000059758 CDK17 -3312 sc-eQTL 2.96e-01 -0.076 0.0726 0.85 B_Naive LOneK1K
ENSG00000111142 METAP2 923648 sc-eQTL 5.01e-01 -0.0663 0.0984 0.85 B_Naive LOneK1K
ENSG00000111144 LTA4H 353648 sc-eQTL 1.35e-01 0.122 0.0813 0.85 B_Naive LOneK1K
ENSG00000111145 ELK3 202793 sc-eQTL 3.69e-02 -0.193 0.092 0.85 B_Naive LOneK1K
ENSG00000136014 USP44 845692 sc-eQTL 9.42e-01 0.00825 0.114 0.85 B_Naive LOneK1K
ENSG00000139343 SNRPF 538240 sc-eQTL 5.99e-01 0.0493 0.0936 0.85 B_Naive LOneK1K
ENSG00000139350 NEDD1 -510055 sc-eQTL 2.46e-01 0.144 0.124 0.85 B_Naive LOneK1K
ENSG00000059758 CDK17 -3312 sc-eQTL 3.63e-03 -0.245 0.0834 0.85 CD14_Mono LOneK1K
ENSG00000084110 HAL 400803 sc-eQTL 1.48e-01 0.149 0.103 0.85 CD14_Mono LOneK1K
ENSG00000111142 METAP2 923648 sc-eQTL 3.32e-01 0.0943 0.0969 0.85 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 353648 sc-eQTL 2.68e-01 0.125 0.113 0.85 CD14_Mono LOneK1K
ENSG00000111145 ELK3 202793 sc-eQTL 2.37e-02 -0.184 0.0808 0.85 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 538240 sc-eQTL 9.87e-01 -0.0013 0.0789 0.85 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -510055 sc-eQTL 5.69e-01 -0.0704 0.124 0.85 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 371845 sc-eQTL 4.93e-02 0.225 0.114 0.85 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -3312 sc-eQTL 3.15e-01 -0.0884 0.0878 0.853 CD16_Mono LOneK1K
ENSG00000084110 HAL 400803 sc-eQTL 1.69e-01 0.143 0.104 0.853 CD16_Mono LOneK1K
ENSG00000111142 METAP2 923648 sc-eQTL 9.38e-02 0.197 0.117 0.853 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 353648 sc-eQTL 7.97e-02 0.202 0.115 0.853 CD16_Mono LOneK1K
ENSG00000111145 ELK3 202793 sc-eQTL 8.76e-02 -0.145 0.0848 0.853 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 538240 sc-eQTL 9.88e-01 -0.00136 0.088 0.853 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -510055 sc-eQTL 8.79e-01 -0.0173 0.113 0.853 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 371845 sc-eQTL 4.05e-01 0.0996 0.119 0.853 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -3312 sc-eQTL 5.75e-02 -0.116 0.0607 0.851 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 923648 sc-eQTL 3.62e-01 0.0849 0.093 0.851 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 353648 sc-eQTL 1.69e-02 -0.253 0.105 0.851 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 202793 sc-eQTL 2.10e-01 -0.122 0.0971 0.851 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 538240 sc-eQTL 8.34e-01 -0.0175 0.0834 0.851 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -510055 sc-eQTL 2.70e-01 -0.115 0.104 0.851 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 202793 eQTL 0.00316 -0.0753 0.0254 0.0 0.0 0.13

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000188596 \N -92407 1.26e-05 1.68e-05 1.35e-06 9.13e-06 1.96e-06 4.22e-06 1.03e-05 1.49e-06 1.03e-05 4.29e-06 1.24e-05 5.26e-06 2.17e-05 3.53e-06 2.96e-06 5.6e-06 4.79e-06 7.53e-06 2.5e-06 2.81e-06 4.51e-06 8.57e-06 7.98e-06 2.18e-06 1.29e-05 3.31e-06 4.39e-06 3.74e-06 9.22e-06 7.71e-06 6.33e-06 8.39e-07 1.05e-06 2.75e-06 4.78e-06 1.09e-06 1.85e-06 1.35e-06 2e-06 9.82e-07 5.19e-07 1.48e-05 1.61e-06 1.9e-07 7.54e-07 1.2e-06 8.82e-07 7.1e-07 5.76e-07