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Genes within 1Mb (chr12:96391493:GT:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -8987 sc-eQTL 9.75e-01 -0.00153 0.0479 0.656 B L1
ENSG00000111142 METAP2 917973 sc-eQTL 9.04e-01 0.00817 0.0678 0.656 B L1
ENSG00000111144 LTA4H 347973 sc-eQTL 6.60e-01 0.0262 0.0595 0.656 B L1
ENSG00000111145 ELK3 197118 sc-eQTL 2.38e-01 -0.0748 0.0632 0.656 B L1
ENSG00000136014 USP44 840017 sc-eQTL 6.41e-01 -0.0365 0.0781 0.656 B L1
ENSG00000139343 SNRPF 532565 sc-eQTL 7.40e-01 0.0191 0.0576 0.656 B L1
ENSG00000139350 NEDD1 -515730 sc-eQTL 7.29e-01 0.0292 0.084 0.656 B L1
ENSG00000059758 CDK17 -8987 sc-eQTL 8.66e-01 -0.00673 0.0397 0.656 CD4T L1
ENSG00000111142 METAP2 917973 sc-eQTL 6.80e-01 0.0229 0.0553 0.656 CD4T L1
ENSG00000111144 LTA4H 347973 sc-eQTL 1.87e-02 -0.127 0.0538 0.656 CD4T L1
ENSG00000111145 ELK3 197118 sc-eQTL 3.85e-01 -0.0513 0.0589 0.656 CD4T L1
ENSG00000136014 USP44 840017 sc-eQTL 8.57e-01 -0.0152 0.0842 0.656 CD4T L1
ENSG00000139343 SNRPF 532565 sc-eQTL 8.58e-01 -0.00924 0.0516 0.656 CD4T L1
ENSG00000139350 NEDD1 -515730 sc-eQTL 9.73e-01 -0.00213 0.0635 0.656 CD4T L1
ENSG00000059758 CDK17 -8987 sc-eQTL 8.93e-01 -0.00548 0.0406 0.656 CD8T L1
ENSG00000111142 METAP2 917973 sc-eQTL 7.03e-01 0.025 0.0655 0.656 CD8T L1
ENSG00000111144 LTA4H 347973 sc-eQTL 5.44e-01 -0.0265 0.0435 0.656 CD8T L1
ENSG00000111145 ELK3 197118 sc-eQTL 6.90e-01 -0.0262 0.0655 0.656 CD8T L1
ENSG00000136014 USP44 840017 sc-eQTL 9.50e-01 -0.0047 0.0746 0.656 CD8T L1
ENSG00000139343 SNRPF 532565 sc-eQTL 3.57e-01 0.0495 0.0536 0.656 CD8T L1
ENSG00000139350 NEDD1 -515730 sc-eQTL 5.83e-02 -0.135 0.0708 0.656 CD8T L1
ENSG00000059758 CDK17 -8987 sc-eQTL 8.26e-01 -0.0163 0.074 0.651 DC L1
ENSG00000084110 HAL 395128 sc-eQTL 2.82e-01 0.0907 0.0841 0.651 DC L1
ENSG00000111142 METAP2 917973 sc-eQTL 6.70e-01 0.0396 0.0929 0.651 DC L1
ENSG00000111144 LTA4H 347973 sc-eQTL 9.22e-01 0.00673 0.0689 0.651 DC L1
ENSG00000111145 ELK3 197118 sc-eQTL 7.77e-02 0.149 0.0838 0.651 DC L1
ENSG00000139343 SNRPF 532565 sc-eQTL 9.96e-01 0.000322 0.0702 0.651 DC L1
ENSG00000139350 NEDD1 -515730 sc-eQTL 7.75e-01 0.0258 0.0901 0.651 DC L1
ENSG00000257715 AC007298.1 366170 sc-eQTL 2.21e-01 -0.0995 0.0811 0.651 DC L1
ENSG00000059758 CDK17 -8987 sc-eQTL 2.47e-02 -0.14 0.0617 0.656 Mono L1
ENSG00000084110 HAL 395128 sc-eQTL 1.33e-01 0.118 0.0783 0.656 Mono L1
ENSG00000111142 METAP2 917973 sc-eQTL 1.99e-01 0.0872 0.0677 0.656 Mono L1
ENSG00000111144 LTA4H 347973 sc-eQTL 8.54e-01 0.0164 0.0888 0.656 Mono L1
ENSG00000111145 ELK3 197118 sc-eQTL 8.05e-01 0.0147 0.0597 0.656 Mono L1
ENSG00000139343 SNRPF 532565 sc-eQTL 1.27e-01 -0.0857 0.056 0.656 Mono L1
ENSG00000139350 NEDD1 -515730 sc-eQTL 3.62e-01 -0.0788 0.0862 0.656 Mono L1
ENSG00000257715 AC007298.1 366170 sc-eQTL 3.85e-01 0.0728 0.0836 0.656 Mono L1
ENSG00000059758 CDK17 -8987 sc-eQTL 3.08e-02 0.096 0.0442 0.657 NK L1
ENSG00000111142 METAP2 917973 sc-eQTL 9.01e-01 -0.0082 0.0661 0.657 NK L1
ENSG00000111144 LTA4H 347973 sc-eQTL 6.93e-01 -0.0299 0.0758 0.657 NK L1
ENSG00000111145 ELK3 197118 sc-eQTL 4.78e-01 0.0511 0.0718 0.657 NK L1
ENSG00000139343 SNRPF 532565 sc-eQTL 5.71e-01 -0.0339 0.0596 0.657 NK L1
ENSG00000139350 NEDD1 -515730 sc-eQTL 4.29e-02 -0.152 0.0748 0.657 NK L1
ENSG00000059758 CDK17 -8987 sc-eQTL 8.97e-02 -0.0632 0.0371 0.656 Other_T L1
ENSG00000074527 NTN4 600341 sc-eQTL 8.73e-01 -0.0111 0.069 0.656 Other_T L1
ENSG00000111142 METAP2 917973 sc-eQTL 3.60e-01 0.0653 0.0711 0.656 Other_T L1
ENSG00000111144 LTA4H 347973 sc-eQTL 5.52e-01 -0.0464 0.078 0.656 Other_T L1
ENSG00000111145 ELK3 197118 sc-eQTL 9.34e-01 0.00508 0.0609 0.656 Other_T L1
ENSG00000139343 SNRPF 532565 sc-eQTL 7.26e-01 0.0198 0.0566 0.656 Other_T L1
ENSG00000139350 NEDD1 -515730 sc-eQTL 7.26e-01 -0.0302 0.0861 0.656 Other_T L1
ENSG00000188596 CFAP54 -98078 sc-eQTL 9.21e-01 0.00881 0.0892 0.656 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -8987 sc-eQTL 9.73e-01 0.00287 0.0858 0.656 B_Activated L2
ENSG00000111142 METAP2 917973 sc-eQTL 5.68e-02 0.205 0.107 0.656 B_Activated L2
ENSG00000111144 LTA4H 347973 sc-eQTL 9.65e-01 0.00429 0.0971 0.656 B_Activated L2
ENSG00000111145 ELK3 197118 sc-eQTL 2.59e-01 0.116 0.103 0.656 B_Activated L2
ENSG00000136014 USP44 840017 sc-eQTL 7.99e-01 -0.0201 0.079 0.656 B_Activated L2
ENSG00000139343 SNRPF 532565 sc-eQTL 9.05e-01 -0.0116 0.097 0.656 B_Activated L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 7.86e-01 -0.0276 0.101 0.656 B_Activated L2
ENSG00000059758 CDK17 -8987 sc-eQTL 7.42e-01 -0.0241 0.0733 0.655 B_Intermediate L2
ENSG00000111142 METAP2 917973 sc-eQTL 7.80e-01 -0.0235 0.084 0.655 B_Intermediate L2
ENSG00000111144 LTA4H 347973 sc-eQTL 8.81e-01 0.0106 0.071 0.655 B_Intermediate L2
ENSG00000111145 ELK3 197118 sc-eQTL 4.00e-01 -0.0674 0.0799 0.655 B_Intermediate L2
ENSG00000136014 USP44 840017 sc-eQTL 3.69e-01 -0.0848 0.0942 0.655 B_Intermediate L2
ENSG00000139343 SNRPF 532565 sc-eQTL 9.30e-01 -0.00697 0.0797 0.655 B_Intermediate L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 2.77e-01 -0.101 0.0931 0.655 B_Intermediate L2
ENSG00000059758 CDK17 -8987 sc-eQTL 9.76e-01 -0.00215 0.0716 0.653 B_Memory L2
ENSG00000111142 METAP2 917973 sc-eQTL 3.14e-01 0.0937 0.0929 0.653 B_Memory L2
ENSG00000111144 LTA4H 347973 sc-eQTL 9.65e-01 0.00366 0.0827 0.653 B_Memory L2
ENSG00000111145 ELK3 197118 sc-eQTL 5.96e-01 -0.0432 0.0812 0.653 B_Memory L2
ENSG00000136014 USP44 840017 sc-eQTL 7.83e-01 0.0246 0.0892 0.653 B_Memory L2
ENSG00000139343 SNRPF 532565 sc-eQTL 1.18e-01 0.135 0.0856 0.653 B_Memory L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 1.81e-01 -0.127 0.0949 0.653 B_Memory L2
ENSG00000059758 CDK17 -8987 sc-eQTL 2.66e-01 -0.0664 0.0596 0.656 B_Naive1 L2
ENSG00000111142 METAP2 917973 sc-eQTL 8.35e-01 -0.0161 0.0773 0.656 B_Naive1 L2
ENSG00000111144 LTA4H 347973 sc-eQTL 9.29e-01 -0.00554 0.0626 0.656 B_Naive1 L2
ENSG00000111145 ELK3 197118 sc-eQTL 4.84e-01 -0.0518 0.0739 0.656 B_Naive1 L2
ENSG00000136014 USP44 840017 sc-eQTL 5.89e-01 -0.0503 0.0929 0.656 B_Naive1 L2
ENSG00000139343 SNRPF 532565 sc-eQTL 3.41e-01 0.0685 0.0718 0.656 B_Naive1 L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 8.81e-01 0.0139 0.0923 0.656 B_Naive1 L2
ENSG00000059758 CDK17 -8987 sc-eQTL 7.26e-01 0.026 0.074 0.655 B_Naive2 L2
ENSG00000111142 METAP2 917973 sc-eQTL 4.75e-01 0.064 0.0893 0.655 B_Naive2 L2
ENSG00000111144 LTA4H 347973 sc-eQTL 9.90e-01 0.000915 0.0702 0.655 B_Naive2 L2
ENSG00000111145 ELK3 197118 sc-eQTL 7.88e-01 -0.0222 0.0828 0.655 B_Naive2 L2
ENSG00000136014 USP44 840017 sc-eQTL 3.61e-01 -0.0816 0.0892 0.655 B_Naive2 L2
ENSG00000139343 SNRPF 532565 sc-eQTL 1.66e-01 0.114 0.0818 0.655 B_Naive2 L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 1.96e-01 0.126 0.0973 0.655 B_Naive2 L2
ENSG00000059758 CDK17 -8987 sc-eQTL 4.90e-01 -0.0478 0.0692 0.65 CD4_CTL L2
ENSG00000111142 METAP2 917973 sc-eQTL 3.51e-01 0.0924 0.0989 0.65 CD4_CTL L2
ENSG00000111144 LTA4H 347973 sc-eQTL 7.53e-02 -0.173 0.0969 0.65 CD4_CTL L2
ENSG00000111145 ELK3 197118 sc-eQTL 7.76e-01 0.0282 0.0989 0.65 CD4_CTL L2
ENSG00000136014 USP44 840017 sc-eQTL 4.09e-01 0.0652 0.0788 0.65 CD4_CTL L2
ENSG00000139343 SNRPF 532565 sc-eQTL 8.67e-01 -0.0144 0.086 0.65 CD4_CTL L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 3.21e-01 -0.0987 0.0992 0.65 CD4_CTL L2
ENSG00000059758 CDK17 -8987 sc-eQTL 5.61e-01 0.0255 0.0438 0.656 CD4_Naive L2
ENSG00000111142 METAP2 917973 sc-eQTL 4.96e-01 0.0431 0.0632 0.656 CD4_Naive L2
ENSG00000111144 LTA4H 347973 sc-eQTL 4.18e-03 -0.18 0.0622 0.656 CD4_Naive L2
ENSG00000111145 ELK3 197118 sc-eQTL 5.75e-01 -0.0356 0.0634 0.656 CD4_Naive L2
ENSG00000136014 USP44 840017 sc-eQTL 9.52e-01 -0.00535 0.0889 0.656 CD4_Naive L2
ENSG00000139343 SNRPF 532565 sc-eQTL 9.89e-01 -0.000779 0.0564 0.656 CD4_Naive L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 2.97e-01 -0.0724 0.0692 0.656 CD4_Naive L2
ENSG00000059758 CDK17 -8987 sc-eQTL 4.10e-01 -0.035 0.0423 0.656 CD4_TCM L2
ENSG00000111142 METAP2 917973 sc-eQTL 5.19e-01 -0.0465 0.0721 0.656 CD4_TCM L2
ENSG00000111144 LTA4H 347973 sc-eQTL 6.31e-01 0.0345 0.0718 0.656 CD4_TCM L2
ENSG00000111145 ELK3 197118 sc-eQTL 3.74e-01 -0.0628 0.0706 0.656 CD4_TCM L2
ENSG00000136014 USP44 840017 sc-eQTL 8.26e-01 -0.0215 0.0977 0.656 CD4_TCM L2
ENSG00000139343 SNRPF 532565 sc-eQTL 9.28e-01 0.00524 0.058 0.656 CD4_TCM L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 2.52e-01 0.0908 0.079 0.656 CD4_TCM L2
ENSG00000059758 CDK17 -8987 sc-eQTL 2.71e-01 0.057 0.0516 0.656 CD4_TEM L2
ENSG00000111142 METAP2 917973 sc-eQTL 4.21e-01 0.0696 0.0863 0.656 CD4_TEM L2
ENSG00000111144 LTA4H 347973 sc-eQTL 6.72e-01 -0.0338 0.0798 0.656 CD4_TEM L2
ENSG00000111145 ELK3 197118 sc-eQTL 5.88e-01 -0.0403 0.0741 0.656 CD4_TEM L2
ENSG00000136014 USP44 840017 sc-eQTL 9.26e-01 -0.00847 0.0913 0.656 CD4_TEM L2
ENSG00000139343 SNRPF 532565 sc-eQTL 1.29e-01 -0.118 0.0773 0.656 CD4_TEM L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 4.50e-01 0.0696 0.092 0.656 CD4_TEM L2
ENSG00000059758 CDK17 -8987 sc-eQTL 5.20e-01 0.0328 0.0509 0.656 CD8_CTL L2
ENSG00000111142 METAP2 917973 sc-eQTL 5.00e-01 -0.0595 0.088 0.656 CD8_CTL L2
ENSG00000111144 LTA4H 347973 sc-eQTL 8.45e-01 -0.018 0.092 0.656 CD8_CTL L2
ENSG00000111145 ELK3 197118 sc-eQTL 1.38e-01 0.124 0.0834 0.656 CD8_CTL L2
ENSG00000136014 USP44 840017 sc-eQTL 7.97e-01 0.0241 0.0934 0.656 CD8_CTL L2
ENSG00000139343 SNRPF 532565 sc-eQTL 8.36e-01 -0.016 0.077 0.656 CD8_CTL L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 1.00e+00 -1.39e-05 0.0864 0.656 CD8_CTL L2
ENSG00000059758 CDK17 -8987 sc-eQTL 6.92e-01 -0.024 0.0605 0.656 CD8_Naive L2
ENSG00000111142 METAP2 917973 sc-eQTL 1.33e-01 0.121 0.08 0.656 CD8_Naive L2
ENSG00000111144 LTA4H 347973 sc-eQTL 4.76e-01 0.0518 0.0725 0.656 CD8_Naive L2
ENSG00000111145 ELK3 197118 sc-eQTL 7.70e-01 0.0225 0.0767 0.656 CD8_Naive L2
ENSG00000136014 USP44 840017 sc-eQTL 6.40e-01 -0.0377 0.0806 0.656 CD8_Naive L2
ENSG00000139343 SNRPF 532565 sc-eQTL 9.60e-01 -0.00344 0.069 0.656 CD8_Naive L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 7.42e-02 -0.146 0.0815 0.656 CD8_Naive L2
ENSG00000059758 CDK17 -8987 sc-eQTL 4.82e-01 0.0476 0.0675 0.65 CD8_TCM L2
ENSG00000111142 METAP2 917973 sc-eQTL 9.21e-01 -0.01 0.101 0.65 CD8_TCM L2
ENSG00000111144 LTA4H 347973 sc-eQTL 8.15e-01 0.0233 0.0994 0.65 CD8_TCM L2
ENSG00000111145 ELK3 197118 sc-eQTL 5.18e-01 -0.0544 0.0841 0.65 CD8_TCM L2
ENSG00000136014 USP44 840017 sc-eQTL 4.48e-01 0.0691 0.091 0.65 CD8_TCM L2
ENSG00000139343 SNRPF 532565 sc-eQTL 6.92e-01 0.0385 0.0969 0.65 CD8_TCM L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 1.52e-01 -0.136 0.0944 0.65 CD8_TCM L2
ENSG00000059758 CDK17 -8987 sc-eQTL 1.88e-01 0.107 0.0813 0.667 CD8_TEM L2
ENSG00000111142 METAP2 917973 sc-eQTL 7.17e-01 0.0348 0.0958 0.667 CD8_TEM L2
ENSG00000111144 LTA4H 347973 sc-eQTL 7.26e-01 -0.0351 0.1 0.667 CD8_TEM L2
ENSG00000111145 ELK3 197118 sc-eQTL 1.27e-01 -0.15 0.0977 0.667 CD8_TEM L2
ENSG00000136014 USP44 840017 sc-eQTL 3.76e-01 0.0741 0.0835 0.667 CD8_TEM L2
ENSG00000139343 SNRPF 532565 sc-eQTL 9.23e-01 0.00882 0.0914 0.667 CD8_TEM L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 5.62e-02 -0.189 0.0983 0.667 CD8_TEM L2
ENSG00000059758 CDK17 -8987 sc-eQTL 1.55e-02 -0.132 0.0539 0.658 MAIT L2
ENSG00000074527 NTN4 600341 sc-eQTL 9.46e-01 0.00499 0.0737 0.658 MAIT L2
ENSG00000111142 METAP2 917973 sc-eQTL 1.77e-01 0.125 0.0924 0.658 MAIT L2
ENSG00000111144 LTA4H 347973 sc-eQTL 9.96e-01 0.000425 0.0845 0.658 MAIT L2
ENSG00000111145 ELK3 197118 sc-eQTL 7.31e-01 -0.0244 0.0709 0.658 MAIT L2
ENSG00000139343 SNRPF 532565 sc-eQTL 7.99e-01 -0.021 0.0822 0.658 MAIT L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 3.83e-01 -0.0805 0.0921 0.658 MAIT L2
ENSG00000188596 CFAP54 -98078 sc-eQTL 7.26e-01 0.0321 0.0914 0.658 MAIT L2
ENSG00000059758 CDK17 -8987 sc-eQTL 2.77e-01 0.0614 0.0564 0.658 NK_CD56bright L2
ENSG00000111142 METAP2 917973 sc-eQTL 5.22e-01 0.0611 0.0953 0.658 NK_CD56bright L2
ENSG00000111144 LTA4H 347973 sc-eQTL 8.97e-01 -0.0108 0.0836 0.658 NK_CD56bright L2
ENSG00000111145 ELK3 197118 sc-eQTL 5.86e-01 0.0484 0.0887 0.658 NK_CD56bright L2
ENSG00000139343 SNRPF 532565 sc-eQTL 8.21e-01 -0.021 0.0928 0.658 NK_CD56bright L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 8.23e-01 -0.0209 0.0937 0.658 NK_CD56bright L2
ENSG00000059758 CDK17 -8987 sc-eQTL 1.13e-02 0.123 0.0481 0.657 NK_CD56dim L2
ENSG00000111142 METAP2 917973 sc-eQTL 9.65e-01 0.00373 0.0855 0.657 NK_CD56dim L2
ENSG00000111144 LTA4H 347973 sc-eQTL 3.76e-01 -0.078 0.088 0.657 NK_CD56dim L2
ENSG00000111145 ELK3 197118 sc-eQTL 3.90e-01 -0.0671 0.0779 0.657 NK_CD56dim L2
ENSG00000139343 SNRPF 532565 sc-eQTL 2.84e-01 -0.0796 0.0741 0.657 NK_CD56dim L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 5.33e-02 -0.165 0.0848 0.657 NK_CD56dim L2
ENSG00000059758 CDK17 -8987 sc-eQTL 3.30e-01 -0.073 0.0748 0.66 NK_HLA L2
ENSG00000111142 METAP2 917973 sc-eQTL 4.32e-01 0.0743 0.0943 0.66 NK_HLA L2
ENSG00000111144 LTA4H 347973 sc-eQTL 2.33e-01 -0.117 0.0979 0.66 NK_HLA L2
ENSG00000111145 ELK3 197118 sc-eQTL 2.82e-01 0.0981 0.0909 0.66 NK_HLA L2
ENSG00000139343 SNRPF 532565 sc-eQTL 9.87e-01 -0.00153 0.095 0.66 NK_HLA L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 5.31e-01 -0.0563 0.0898 0.66 NK_HLA L2
ENSG00000059758 CDK17 -8987 sc-eQTL 4.34e-01 0.0418 0.0533 0.657 NK_cytokine L2
ENSG00000111142 METAP2 917973 sc-eQTL 9.92e-01 0.000881 0.0887 0.657 NK_cytokine L2
ENSG00000111144 LTA4H 347973 sc-eQTL 9.87e-01 -0.00146 0.0903 0.657 NK_cytokine L2
ENSG00000111145 ELK3 197118 sc-eQTL 5.44e-01 0.0525 0.0864 0.657 NK_cytokine L2
ENSG00000139343 SNRPF 532565 sc-eQTL 8.86e-01 -0.0106 0.0732 0.657 NK_cytokine L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 1.20e-01 -0.141 0.09 0.657 NK_cytokine L2
ENSG00000059758 CDK17 -8987 sc-eQTL 4.23e-01 0.0772 0.096 0.656 PB L2
ENSG00000111142 METAP2 917973 sc-eQTL 6.20e-01 0.0559 0.112 0.656 PB L2
ENSG00000111144 LTA4H 347973 sc-eQTL 2.76e-01 -0.0925 0.0845 0.656 PB L2
ENSG00000111145 ELK3 197118 sc-eQTL 5.79e-01 0.0605 0.109 0.656 PB L2
ENSG00000136014 USP44 840017 sc-eQTL 1.54e-01 -0.143 0.0999 0.656 PB L2
ENSG00000139343 SNRPF 532565 sc-eQTL 4.87e-01 -0.0738 0.106 0.656 PB L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 6.69e-01 0.0541 0.126 0.656 PB L2
ENSG00000059758 CDK17 -8987 sc-eQTL 7.34e-01 -0.0203 0.0597 0.654 Pro_T L2
ENSG00000074527 NTN4 600341 sc-eQTL 5.14e-01 0.0438 0.067 0.654 Pro_T L2
ENSG00000111142 METAP2 917973 sc-eQTL 7.84e-01 0.0217 0.0792 0.654 Pro_T L2
ENSG00000111144 LTA4H 347973 sc-eQTL 2.82e-01 -0.0847 0.0786 0.654 Pro_T L2
ENSG00000111145 ELK3 197118 sc-eQTL 2.38e-01 -0.112 0.0951 0.654 Pro_T L2
ENSG00000139343 SNRPF 532565 sc-eQTL 8.21e-01 0.0136 0.0601 0.654 Pro_T L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 9.19e-01 -0.00888 0.0874 0.654 Pro_T L2
ENSG00000188596 CFAP54 -98078 sc-eQTL 5.59e-01 -0.0414 0.0706 0.654 Pro_T L2
ENSG00000059758 CDK17 -8987 sc-eQTL 2.52e-01 -0.0756 0.0658 0.656 Treg L2
ENSG00000111142 METAP2 917973 sc-eQTL 8.18e-01 0.0207 0.0898 0.656 Treg L2
ENSG00000111144 LTA4H 347973 sc-eQTL 5.32e-01 -0.0523 0.0836 0.656 Treg L2
ENSG00000111145 ELK3 197118 sc-eQTL 5.34e-01 -0.0472 0.0757 0.656 Treg L2
ENSG00000136014 USP44 840017 sc-eQTL 4.43e-01 0.0652 0.085 0.656 Treg L2
ENSG00000139343 SNRPF 532565 sc-eQTL 2.84e-02 0.191 0.0868 0.656 Treg L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 7.91e-01 -0.026 0.0979 0.656 Treg L2
ENSG00000059758 CDK17 -8987 sc-eQTL 9.64e-01 0.00358 0.079 0.641 cDC L2
ENSG00000084110 HAL 395128 sc-eQTL 7.98e-01 0.0211 0.0821 0.641 cDC L2
ENSG00000111142 METAP2 917973 sc-eQTL 5.63e-01 0.0574 0.099 0.641 cDC L2
ENSG00000111144 LTA4H 347973 sc-eQTL 1.06e-01 0.114 0.0699 0.641 cDC L2
ENSG00000111145 ELK3 197118 sc-eQTL 6.13e-02 0.173 0.092 0.641 cDC L2
ENSG00000139343 SNRPF 532565 sc-eQTL 3.24e-01 -0.0767 0.0775 0.641 cDC L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 6.05e-01 -0.049 0.0947 0.641 cDC L2
ENSG00000257715 AC007298.1 366170 sc-eQTL 9.47e-01 -0.00536 0.0799 0.641 cDC L2
ENSG00000059758 CDK17 -8987 sc-eQTL 6.19e-04 -0.237 0.0682 0.656 cMono_IL1B L2
ENSG00000084110 HAL 395128 sc-eQTL 3.71e-01 0.0685 0.0764 0.656 cMono_IL1B L2
ENSG00000111142 METAP2 917973 sc-eQTL 1.12e-01 0.126 0.0789 0.656 cMono_IL1B L2
ENSG00000111144 LTA4H 347973 sc-eQTL 9.59e-01 -0.0043 0.0827 0.656 cMono_IL1B L2
ENSG00000111145 ELK3 197118 sc-eQTL 7.98e-01 -0.0163 0.0637 0.656 cMono_IL1B L2
ENSG00000139343 SNRPF 532565 sc-eQTL 7.07e-01 0.0247 0.0657 0.656 cMono_IL1B L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 9.01e-01 -0.0112 0.0905 0.656 cMono_IL1B L2
ENSG00000257715 AC007298.1 366170 sc-eQTL 7.45e-02 0.15 0.0838 0.656 cMono_IL1B L2
ENSG00000059758 CDK17 -8987 sc-eQTL 5.98e-02 -0.149 0.0787 0.656 cMono_S100A L2
ENSG00000084110 HAL 395128 sc-eQTL 1.60e-01 0.125 0.0887 0.656 cMono_S100A L2
ENSG00000111142 METAP2 917973 sc-eQTL 1.02e-01 0.147 0.0896 0.656 cMono_S100A L2
ENSG00000111144 LTA4H 347973 sc-eQTL 9.51e-01 -0.00548 0.089 0.656 cMono_S100A L2
ENSG00000111145 ELK3 197118 sc-eQTL 3.66e-01 0.0656 0.0724 0.656 cMono_S100A L2
ENSG00000139343 SNRPF 532565 sc-eQTL 4.25e-02 -0.145 0.071 0.656 cMono_S100A L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 2.05e-01 -0.123 0.0963 0.656 cMono_S100A L2
ENSG00000257715 AC007298.1 366170 sc-eQTL 8.17e-01 0.0211 0.091 0.656 cMono_S100A L2
ENSG00000059758 CDK17 -8987 sc-eQTL 8.41e-01 0.0152 0.0757 0.658 gdT L2
ENSG00000074527 NTN4 600341 sc-eQTL 5.92e-01 -0.0467 0.0868 0.658 gdT L2
ENSG00000111142 METAP2 917973 sc-eQTL 7.94e-01 -0.0284 0.109 0.658 gdT L2
ENSG00000111144 LTA4H 347973 sc-eQTL 3.70e-01 0.102 0.113 0.658 gdT L2
ENSG00000111145 ELK3 197118 sc-eQTL 1.34e-01 0.157 0.104 0.658 gdT L2
ENSG00000139343 SNRPF 532565 sc-eQTL 1.82e-02 0.237 0.0992 0.658 gdT L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 4.08e-01 -0.0924 0.111 0.658 gdT L2
ENSG00000188596 CFAP54 -98078 sc-eQTL 4.41e-01 0.0755 0.0977 0.658 gdT L2
ENSG00000059758 CDK17 -8987 sc-eQTL 5.48e-01 0.0536 0.0892 0.651 intMono L2
ENSG00000084110 HAL 395128 sc-eQTL 3.38e-01 0.0864 0.0901 0.651 intMono L2
ENSG00000111142 METAP2 917973 sc-eQTL 9.17e-01 -0.0107 0.102 0.651 intMono L2
ENSG00000111144 LTA4H 347973 sc-eQTL 2.20e-01 0.113 0.0923 0.651 intMono L2
ENSG00000111145 ELK3 197118 sc-eQTL 9.80e-01 -0.00203 0.0825 0.651 intMono L2
ENSG00000139343 SNRPF 532565 sc-eQTL 1.31e-02 -0.217 0.0868 0.651 intMono L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 8.58e-01 -0.0164 0.0916 0.651 intMono L2
ENSG00000257715 AC007298.1 366170 sc-eQTL 3.50e-01 0.0862 0.0919 0.651 intMono L2
ENSG00000059758 CDK17 -8987 sc-eQTL 5.99e-01 0.0377 0.0717 0.654 ncMono L2
ENSG00000084110 HAL 395128 sc-eQTL 6.98e-01 -0.0312 0.08 0.654 ncMono L2
ENSG00000111142 METAP2 917973 sc-eQTL 6.14e-01 0.0488 0.0968 0.654 ncMono L2
ENSG00000111144 LTA4H 347973 sc-eQTL 4.15e-01 0.0728 0.0891 0.654 ncMono L2
ENSG00000111145 ELK3 197118 sc-eQTL 7.10e-01 -0.0286 0.0766 0.654 ncMono L2
ENSG00000139343 SNRPF 532565 sc-eQTL 5.42e-02 -0.15 0.0776 0.654 ncMono L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 9.88e-01 0.00122 0.0832 0.654 ncMono L2
ENSG00000257715 AC007298.1 366170 sc-eQTL 9.29e-01 0.00845 0.0949 0.654 ncMono L2
ENSG00000059758 CDK17 -8987 sc-eQTL 8.99e-01 -0.012 0.0941 0.65 pDC L2
ENSG00000084110 HAL 395128 sc-eQTL 9.26e-03 0.205 0.0777 0.65 pDC L2
ENSG00000111142 METAP2 917973 sc-eQTL 3.62e-01 0.0979 0.107 0.65 pDC L2
ENSG00000111144 LTA4H 347973 sc-eQTL 3.23e-01 -0.0879 0.0887 0.65 pDC L2
ENSG00000111145 ELK3 197118 sc-eQTL 6.12e-01 0.0552 0.109 0.65 pDC L2
ENSG00000139343 SNRPF 532565 sc-eQTL 8.86e-01 0.0136 0.0949 0.65 pDC L2
ENSG00000139350 NEDD1 -515730 sc-eQTL 1.07e-01 0.169 0.104 0.65 pDC L2
ENSG00000257715 AC007298.1 366170 sc-eQTL 7.62e-01 0.0273 0.0898 0.65 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -8987 sc-eQTL 9.62e-01 -0.00296 0.0619 0.656 B_Memory LOneK1K
ENSG00000111142 METAP2 917973 sc-eQTL 4.00e-01 0.0724 0.0859 0.656 B_Memory LOneK1K
ENSG00000111144 LTA4H 347973 sc-eQTL 5.83e-01 0.0353 0.0642 0.656 B_Memory LOneK1K
ENSG00000111145 ELK3 197118 sc-eQTL 3.10e-01 -0.0746 0.0732 0.656 B_Memory LOneK1K
ENSG00000136014 USP44 840017 sc-eQTL 8.59e-01 -0.0162 0.0915 0.656 B_Memory LOneK1K
ENSG00000139343 SNRPF 532565 sc-eQTL 2.56e-01 0.0808 0.0709 0.656 B_Memory LOneK1K
ENSG00000139350 NEDD1 -515730 sc-eQTL 9.97e-02 -0.153 0.0927 0.656 B_Memory LOneK1K
ENSG00000059758 CDK17 -8987 sc-eQTL 2.09e-01 -0.0674 0.0535 0.656 B_Naive LOneK1K
ENSG00000111142 METAP2 917973 sc-eQTL 9.57e-01 0.00392 0.0726 0.656 B_Naive LOneK1K
ENSG00000111144 LTA4H 347973 sc-eQTL 5.94e-01 0.0322 0.0602 0.656 B_Naive LOneK1K
ENSG00000111145 ELK3 197118 sc-eQTL 1.49e-01 -0.099 0.0682 0.656 B_Naive LOneK1K
ENSG00000136014 USP44 840017 sc-eQTL 8.42e-01 -0.0168 0.0838 0.656 B_Naive LOneK1K
ENSG00000139343 SNRPF 532565 sc-eQTL 3.94e-01 0.0589 0.0689 0.656 B_Naive LOneK1K
ENSG00000139350 NEDD1 -515730 sc-eQTL 2.11e-01 0.114 0.0911 0.656 B_Naive LOneK1K
ENSG00000059758 CDK17 -8987 sc-eQTL 6.03e-04 -0.218 0.0627 0.656 CD14_Mono LOneK1K
ENSG00000084110 HAL 395128 sc-eQTL 3.16e-01 0.0783 0.0779 0.656 CD14_Mono LOneK1K
ENSG00000111142 METAP2 917973 sc-eQTL 6.74e-02 0.134 0.073 0.656 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 347973 sc-eQTL 6.41e-01 0.0401 0.0857 0.656 CD14_Mono LOneK1K
ENSG00000111145 ELK3 197118 sc-eQTL 9.04e-01 0.00751 0.0619 0.656 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 532565 sc-eQTL 3.73e-01 -0.0533 0.0597 0.656 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -515730 sc-eQTL 3.81e-01 -0.0822 0.0936 0.656 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 366170 sc-eQTL 1.62e-01 0.121 0.0864 0.656 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -8987 sc-eQTL 9.13e-01 0.00711 0.065 0.657 CD16_Mono LOneK1K
ENSG00000084110 HAL 395128 sc-eQTL 7.88e-01 0.0207 0.0768 0.657 CD16_Mono LOneK1K
ENSG00000111142 METAP2 917973 sc-eQTL 5.24e-01 0.0556 0.0871 0.657 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 347973 sc-eQTL 5.74e-01 0.048 0.0851 0.657 CD16_Mono LOneK1K
ENSG00000111145 ELK3 197118 sc-eQTL 3.02e-01 -0.0651 0.0629 0.657 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 532565 sc-eQTL 9.22e-02 -0.109 0.0646 0.657 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -515730 sc-eQTL 5.33e-01 -0.052 0.0833 0.657 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 366170 sc-eQTL 9.67e-01 0.00363 0.0882 0.657 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -8987 sc-eQTL 8.01e-02 0.0797 0.0453 0.657 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 917973 sc-eQTL 9.46e-01 0.00468 0.0694 0.657 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 347973 sc-eQTL 8.12e-01 -0.0189 0.0793 0.657 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 197118 sc-eQTL 8.78e-01 0.0112 0.0726 0.657 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 532565 sc-eQTL 3.79e-01 -0.0547 0.062 0.657 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -515730 sc-eQTL 4.23e-02 -0.157 0.0767 0.657 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 197118 eQTL 1.2e-06 -0.0867 0.0177 0.0 0.0 0.342

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 ELK3 197118 6.26e-05 1.53e-05 4.17e-06 5.52e-06 1.88e-06 4.24e-06 1.41e-05 1.25e-06 6.66e-06 2.76e-06 1.43e-05 3.29e-06 1.7e-05 3.5e-06 2.24e-06 6.52e-06 4.09e-06 4.73e-06 2.34e-06 2.44e-06 4.52e-06 9.08e-06 1.27e-05 1.95e-06 1.15e-05 1.96e-06 4.15e-06 2.43e-06 8.7e-06 6.83e-06 4.49e-06 4.18e-07 1.17e-06 4.02e-06 4.3e-06 1.32e-06 1.08e-06 4.92e-07 9.07e-07 7.31e-07 9.87e-07 3.22e-05 3.55e-06 1.99e-07 7.51e-07 1.75e-06 1.08e-06 1.99e-07 3.43e-07
ENSG00000188596 \N -98082 9.99e-05 2.67e-05 8.06e-06 8.64e-06 2.39e-06 6.22e-06 2.37e-05 1.81e-06 1.02e-05 4.81e-06 1.87e-05 4.64e-06 2.39e-05 5.17e-06 4.13e-06 8.93e-06 6.94e-06 9.66e-06 3.64e-06 2.89e-06 6.71e-06 1.27e-05 2.24e-05 3.4e-06 1.78e-05 3.28e-06 6.94e-06 4.66e-06 1.44e-05 8e-06 6.76e-06 4.84e-07 1.89e-06 4.75e-06 5.76e-06 2.81e-06 1.42e-06 5.42e-07 1.31e-06 1e-06 9.48e-07 5.34e-05 5.36e-06 1.54e-07 1.05e-06 2.49e-06 9.78e-07 5.05e-07 4.55e-07