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Genes within 1Mb (chr12:96383628:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -16852 sc-eQTL 9.53e-01 -0.00285 0.0486 0.662 B L1
ENSG00000111142 METAP2 910108 sc-eQTL 9.75e-01 0.00218 0.0688 0.662 B L1
ENSG00000111144 LTA4H 340108 sc-eQTL 4.47e-01 0.046 0.0603 0.662 B L1
ENSG00000111145 ELK3 189253 sc-eQTL 2.09e-01 -0.0807 0.0641 0.662 B L1
ENSG00000136014 USP44 832152 sc-eQTL 6.51e-01 -0.0359 0.0793 0.662 B L1
ENSG00000139343 SNRPF 524700 sc-eQTL 7.76e-01 0.0166 0.0584 0.662 B L1
ENSG00000139350 NEDD1 -523595 sc-eQTL 7.05e-01 0.0323 0.0853 0.662 B L1
ENSG00000059758 CDK17 -16852 sc-eQTL 8.67e-01 -0.00671 0.0402 0.662 CD4T L1
ENSG00000111142 METAP2 910108 sc-eQTL 7.41e-01 0.0186 0.056 0.662 CD4T L1
ENSG00000111144 LTA4H 340108 sc-eQTL 1.75e-02 -0.13 0.0544 0.662 CD4T L1
ENSG00000111145 ELK3 189253 sc-eQTL 3.48e-01 -0.0561 0.0596 0.662 CD4T L1
ENSG00000136014 USP44 832152 sc-eQTL 7.56e-01 -0.0265 0.0852 0.662 CD4T L1
ENSG00000139343 SNRPF 524700 sc-eQTL 7.53e-01 -0.0165 0.0522 0.662 CD4T L1
ENSG00000139350 NEDD1 -523595 sc-eQTL 8.97e-01 0.00831 0.0643 0.662 CD4T L1
ENSG00000059758 CDK17 -16852 sc-eQTL 7.75e-01 0.0118 0.041 0.662 CD8T L1
ENSG00000111142 METAP2 910108 sc-eQTL 5.42e-01 0.0405 0.0662 0.662 CD8T L1
ENSG00000111144 LTA4H 340108 sc-eQTL 7.02e-01 -0.0169 0.0441 0.662 CD8T L1
ENSG00000111145 ELK3 189253 sc-eQTL 5.78e-01 -0.0369 0.0663 0.662 CD8T L1
ENSG00000136014 USP44 832152 sc-eQTL 8.13e-01 -0.0179 0.0754 0.662 CD8T L1
ENSG00000139343 SNRPF 524700 sc-eQTL 4.00e-01 0.0458 0.0543 0.662 CD8T L1
ENSG00000139350 NEDD1 -523595 sc-eQTL 4.76e-02 -0.143 0.0716 0.662 CD8T L1
ENSG00000059758 CDK17 -16852 sc-eQTL 8.98e-01 -0.00966 0.0751 0.658 DC L1
ENSG00000084110 HAL 387263 sc-eQTL 3.11e-01 0.0866 0.0853 0.658 DC L1
ENSG00000111142 METAP2 910108 sc-eQTL 7.40e-01 0.0313 0.0942 0.658 DC L1
ENSG00000111144 LTA4H 340108 sc-eQTL 9.18e-01 0.0072 0.0699 0.658 DC L1
ENSG00000111145 ELK3 189253 sc-eQTL 6.26e-02 0.159 0.0849 0.658 DC L1
ENSG00000139343 SNRPF 524700 sc-eQTL 9.46e-01 -0.00484 0.0712 0.658 DC L1
ENSG00000139350 NEDD1 -523595 sc-eQTL 6.07e-01 0.0471 0.0914 0.658 DC L1
ENSG00000257715 AC007298.1 358305 sc-eQTL 2.58e-01 -0.0934 0.0823 0.658 DC L1
ENSG00000059758 CDK17 -16852 sc-eQTL 2.58e-02 -0.141 0.0629 0.662 Mono L1
ENSG00000084110 HAL 387263 sc-eQTL 9.11e-02 0.135 0.0796 0.662 Mono L1
ENSG00000111142 METAP2 910108 sc-eQTL 2.09e-01 0.087 0.069 0.662 Mono L1
ENSG00000111144 LTA4H 340108 sc-eQTL 7.01e-01 0.0348 0.0905 0.662 Mono L1
ENSG00000111145 ELK3 189253 sc-eQTL 6.95e-01 0.0238 0.0608 0.662 Mono L1
ENSG00000139343 SNRPF 524700 sc-eQTL 9.90e-02 -0.0944 0.0569 0.662 Mono L1
ENSG00000139350 NEDD1 -523595 sc-eQTL 2.64e-01 -0.0982 0.0877 0.662 Mono L1
ENSG00000257715 AC007298.1 358305 sc-eQTL 2.49e-01 0.0982 0.085 0.662 Mono L1
ENSG00000059758 CDK17 -16852 sc-eQTL 1.95e-02 0.105 0.0446 0.663 NK L1
ENSG00000111142 METAP2 910108 sc-eQTL 7.61e-01 -0.0204 0.0669 0.663 NK L1
ENSG00000111144 LTA4H 340108 sc-eQTL 7.81e-01 -0.0214 0.0767 0.663 NK L1
ENSG00000111145 ELK3 189253 sc-eQTL 5.38e-01 0.0448 0.0727 0.663 NK L1
ENSG00000139343 SNRPF 524700 sc-eQTL 4.23e-01 -0.0484 0.0603 0.663 NK L1
ENSG00000139350 NEDD1 -523595 sc-eQTL 4.04e-02 -0.156 0.0757 0.663 NK L1
ENSG00000059758 CDK17 -16852 sc-eQTL 1.80e-01 -0.0506 0.0376 0.662 Other_T L1
ENSG00000074527 NTN4 592476 sc-eQTL 9.74e-01 -0.00228 0.0699 0.662 Other_T L1
ENSG00000111142 METAP2 910108 sc-eQTL 3.32e-01 0.07 0.072 0.662 Other_T L1
ENSG00000111144 LTA4H 340108 sc-eQTL 7.07e-01 -0.0298 0.079 0.662 Other_T L1
ENSG00000111145 ELK3 189253 sc-eQTL 9.25e-01 0.00582 0.0617 0.662 Other_T L1
ENSG00000139343 SNRPF 524700 sc-eQTL 9.22e-01 0.00563 0.0573 0.662 Other_T L1
ENSG00000139350 NEDD1 -523595 sc-eQTL 7.63e-01 -0.0263 0.0872 0.662 Other_T L1
ENSG00000188596 CFAP54 -105943 sc-eQTL 9.99e-01 -0.000154 0.0904 0.662 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -16852 sc-eQTL 7.76e-01 -0.0249 0.0875 0.661 B_Activated L2
ENSG00000111142 METAP2 910108 sc-eQTL 5.37e-02 0.212 0.109 0.661 B_Activated L2
ENSG00000111144 LTA4H 340108 sc-eQTL 7.80e-01 0.0277 0.099 0.661 B_Activated L2
ENSG00000111145 ELK3 189253 sc-eQTL 1.89e-01 0.138 0.104 0.661 B_Activated L2
ENSG00000136014 USP44 832152 sc-eQTL 7.44e-01 -0.0264 0.0805 0.661 B_Activated L2
ENSG00000139343 SNRPF 524700 sc-eQTL 9.93e-01 -0.000867 0.0989 0.661 B_Activated L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 6.21e-01 -0.0512 0.103 0.661 B_Activated L2
ENSG00000059758 CDK17 -16852 sc-eQTL 8.38e-01 -0.0152 0.0744 0.661 B_Intermediate L2
ENSG00000111142 METAP2 910108 sc-eQTL 8.26e-01 -0.0187 0.0853 0.661 B_Intermediate L2
ENSG00000111144 LTA4H 340108 sc-eQTL 5.90e-01 0.0388 0.072 0.661 B_Intermediate L2
ENSG00000111145 ELK3 189253 sc-eQTL 2.76e-01 -0.0885 0.081 0.661 B_Intermediate L2
ENSG00000136014 USP44 832152 sc-eQTL 3.36e-01 -0.0922 0.0956 0.661 B_Intermediate L2
ENSG00000139343 SNRPF 524700 sc-eQTL 8.61e-01 -0.0142 0.0809 0.661 B_Intermediate L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 3.14e-01 -0.0954 0.0945 0.661 B_Intermediate L2
ENSG00000059758 CDK17 -16852 sc-eQTL 9.57e-01 0.00397 0.0728 0.659 B_Memory L2
ENSG00000111142 METAP2 910108 sc-eQTL 4.44e-01 0.0725 0.0945 0.659 B_Memory L2
ENSG00000111144 LTA4H 340108 sc-eQTL 5.85e-01 0.0459 0.084 0.659 B_Memory L2
ENSG00000111145 ELK3 189253 sc-eQTL 5.32e-01 -0.0516 0.0825 0.659 B_Memory L2
ENSG00000136014 USP44 832152 sc-eQTL 7.83e-01 0.0251 0.0906 0.659 B_Memory L2
ENSG00000139343 SNRPF 524700 sc-eQTL 1.27e-01 0.133 0.0871 0.659 B_Memory L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 9.53e-02 -0.161 0.0962 0.659 B_Memory L2
ENSG00000059758 CDK17 -16852 sc-eQTL 2.32e-01 -0.0723 0.0604 0.662 B_Naive1 L2
ENSG00000111142 METAP2 910108 sc-eQTL 7.51e-01 -0.0249 0.0784 0.662 B_Naive1 L2
ENSG00000111144 LTA4H 340108 sc-eQTL 9.78e-01 0.00178 0.0635 0.662 B_Naive1 L2
ENSG00000111145 ELK3 189253 sc-eQTL 5.85e-01 -0.0411 0.075 0.662 B_Naive1 L2
ENSG00000136014 USP44 832152 sc-eQTL 5.57e-01 -0.0554 0.0942 0.662 B_Naive1 L2
ENSG00000139343 SNRPF 524700 sc-eQTL 3.67e-01 0.0659 0.0728 0.662 B_Naive1 L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 8.75e-01 0.0147 0.0936 0.662 B_Naive1 L2
ENSG00000059758 CDK17 -16852 sc-eQTL 6.07e-01 0.0387 0.0752 0.661 B_Naive2 L2
ENSG00000111142 METAP2 910108 sc-eQTL 3.93e-01 0.0776 0.0906 0.661 B_Naive2 L2
ENSG00000111144 LTA4H 340108 sc-eQTL 6.31e-01 0.0343 0.0712 0.661 B_Naive2 L2
ENSG00000111145 ELK3 189253 sc-eQTL 7.10e-01 -0.0313 0.084 0.661 B_Naive2 L2
ENSG00000136014 USP44 832152 sc-eQTL 4.02e-01 -0.0761 0.0906 0.661 B_Naive2 L2
ENSG00000139343 SNRPF 524700 sc-eQTL 1.26e-01 0.127 0.083 0.661 B_Naive2 L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 1.11e-01 0.158 0.0986 0.661 B_Naive2 L2
ENSG00000059758 CDK17 -16852 sc-eQTL 7.32e-01 -0.0241 0.0703 0.657 CD4_CTL L2
ENSG00000111142 METAP2 910108 sc-eQTL 3.97e-01 0.0854 0.1 0.657 CD4_CTL L2
ENSG00000111144 LTA4H 340108 sc-eQTL 1.01e-01 -0.162 0.0985 0.657 CD4_CTL L2
ENSG00000111145 ELK3 189253 sc-eQTL 7.27e-01 0.0351 0.1 0.657 CD4_CTL L2
ENSG00000136014 USP44 832152 sc-eQTL 3.89e-01 0.069 0.08 0.657 CD4_CTL L2
ENSG00000139343 SNRPF 524700 sc-eQTL 9.92e-01 -0.000828 0.0873 0.657 CD4_CTL L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 3.31e-01 -0.0982 0.101 0.657 CD4_CTL L2
ENSG00000059758 CDK17 -16852 sc-eQTL 6.13e-01 0.0225 0.0444 0.662 CD4_Naive L2
ENSG00000111142 METAP2 910108 sc-eQTL 5.45e-01 0.0387 0.0639 0.662 CD4_Naive L2
ENSG00000111144 LTA4H 340108 sc-eQTL 2.62e-03 -0.191 0.0628 0.662 CD4_Naive L2
ENSG00000111145 ELK3 189253 sc-eQTL 5.33e-01 -0.0401 0.0641 0.662 CD4_Naive L2
ENSG00000136014 USP44 832152 sc-eQTL 8.10e-01 -0.0217 0.09 0.662 CD4_Naive L2
ENSG00000139343 SNRPF 524700 sc-eQTL 8.50e-01 -0.0108 0.057 0.662 CD4_Naive L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 3.56e-01 -0.0648 0.0701 0.662 CD4_Naive L2
ENSG00000059758 CDK17 -16852 sc-eQTL 4.81e-01 -0.0302 0.0429 0.662 CD4_TCM L2
ENSG00000111142 METAP2 910108 sc-eQTL 5.85e-01 -0.0399 0.073 0.662 CD4_TCM L2
ENSG00000111144 LTA4H 340108 sc-eQTL 5.20e-01 0.0469 0.0727 0.662 CD4_TCM L2
ENSG00000111145 ELK3 189253 sc-eQTL 2.96e-01 -0.0748 0.0715 0.662 CD4_TCM L2
ENSG00000136014 USP44 832152 sc-eQTL 8.36e-01 -0.0205 0.099 0.662 CD4_TCM L2
ENSG00000139343 SNRPF 524700 sc-eQTL 9.69e-01 0.00229 0.0588 0.662 CD4_TCM L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 2.32e-01 0.096 0.08 0.662 CD4_TCM L2
ENSG00000059758 CDK17 -16852 sc-eQTL 1.99e-01 0.0672 0.0522 0.662 CD4_TEM L2
ENSG00000111142 METAP2 910108 sc-eQTL 4.88e-01 0.0608 0.0875 0.662 CD4_TEM L2
ENSG00000111144 LTA4H 340108 sc-eQTL 6.48e-01 -0.037 0.0809 0.662 CD4_TEM L2
ENSG00000111145 ELK3 189253 sc-eQTL 6.49e-01 -0.0342 0.0751 0.662 CD4_TEM L2
ENSG00000136014 USP44 832152 sc-eQTL 9.77e-01 -0.0027 0.0925 0.662 CD4_TEM L2
ENSG00000139343 SNRPF 524700 sc-eQTL 9.90e-02 -0.13 0.0782 0.662 CD4_TEM L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 3.15e-01 0.0938 0.0931 0.662 CD4_TEM L2
ENSG00000059758 CDK17 -16852 sc-eQTL 3.67e-01 0.0467 0.0517 0.662 CD8_CTL L2
ENSG00000111142 METAP2 910108 sc-eQTL 5.83e-01 -0.0491 0.0894 0.662 CD8_CTL L2
ENSG00000111144 LTA4H 340108 sc-eQTL 7.61e-01 -0.0285 0.0935 0.662 CD8_CTL L2
ENSG00000111145 ELK3 189253 sc-eQTL 1.27e-01 0.13 0.0846 0.662 CD8_CTL L2
ENSG00000136014 USP44 832152 sc-eQTL 8.20e-01 0.0216 0.0948 0.662 CD8_CTL L2
ENSG00000139343 SNRPF 524700 sc-eQTL 7.46e-01 -0.0254 0.0782 0.662 CD8_CTL L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 9.69e-01 -0.00337 0.0877 0.662 CD8_CTL L2
ENSG00000059758 CDK17 -16852 sc-eQTL 7.16e-01 -0.0223 0.0613 0.662 CD8_Naive L2
ENSG00000111142 METAP2 910108 sc-eQTL 7.37e-02 0.145 0.0809 0.662 CD8_Naive L2
ENSG00000111144 LTA4H 340108 sc-eQTL 3.39e-01 0.0703 0.0734 0.662 CD8_Naive L2
ENSG00000111145 ELK3 189253 sc-eQTL 9.34e-01 -0.00642 0.0778 0.662 CD8_Naive L2
ENSG00000136014 USP44 832152 sc-eQTL 4.60e-01 -0.0604 0.0816 0.662 CD8_Naive L2
ENSG00000139343 SNRPF 524700 sc-eQTL 9.78e-01 0.00189 0.0699 0.662 CD8_Naive L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 9.33e-02 -0.139 0.0827 0.662 CD8_Naive L2
ENSG00000059758 CDK17 -16852 sc-eQTL 3.04e-01 0.0701 0.068 0.657 CD8_TCM L2
ENSG00000111142 METAP2 910108 sc-eQTL 8.80e-01 -0.0154 0.102 0.657 CD8_TCM L2
ENSG00000111144 LTA4H 340108 sc-eQTL 6.24e-01 0.0491 0.1 0.657 CD8_TCM L2
ENSG00000111145 ELK3 189253 sc-eQTL 5.00e-01 -0.0573 0.0848 0.657 CD8_TCM L2
ENSG00000136014 USP44 832152 sc-eQTL 3.61e-01 0.084 0.0917 0.657 CD8_TCM L2
ENSG00000139343 SNRPF 524700 sc-eQTL 7.95e-01 0.0255 0.0977 0.657 CD8_TCM L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 1.92e-01 -0.125 0.0953 0.657 CD8_TCM L2
ENSG00000059758 CDK17 -16852 sc-eQTL 1.32e-01 0.125 0.0824 0.674 CD8_TEM L2
ENSG00000111142 METAP2 910108 sc-eQTL 7.22e-01 0.0346 0.0973 0.674 CD8_TEM L2
ENSG00000111144 LTA4H 340108 sc-eQTL 9.57e-01 -0.00546 0.101 0.674 CD8_TEM L2
ENSG00000111145 ELK3 189253 sc-eQTL 9.62e-02 -0.166 0.0991 0.674 CD8_TEM L2
ENSG00000136014 USP44 832152 sc-eQTL 3.90e-01 0.073 0.0848 0.674 CD8_TEM L2
ENSG00000139343 SNRPF 524700 sc-eQTL 9.75e-01 0.00296 0.0927 0.674 CD8_TEM L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 2.85e-02 -0.219 0.0994 0.674 CD8_TEM L2
ENSG00000059758 CDK17 -16852 sc-eQTL 3.24e-02 -0.118 0.055 0.665 MAIT L2
ENSG00000074527 NTN4 592476 sc-eQTL 8.46e-01 0.0146 0.0749 0.665 MAIT L2
ENSG00000111142 METAP2 910108 sc-eQTL 1.27e-01 0.144 0.0938 0.665 MAIT L2
ENSG00000111144 LTA4H 340108 sc-eQTL 9.17e-01 0.00901 0.0859 0.665 MAIT L2
ENSG00000111145 ELK3 189253 sc-eQTL 6.77e-01 -0.0301 0.072 0.665 MAIT L2
ENSG00000139343 SNRPF 524700 sc-eQTL 7.26e-01 -0.0293 0.0835 0.665 MAIT L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 4.20e-01 -0.0757 0.0936 0.665 MAIT L2
ENSG00000188596 CFAP54 -105943 sc-eQTL 8.31e-01 0.0198 0.0929 0.665 MAIT L2
ENSG00000059758 CDK17 -16852 sc-eQTL 1.93e-01 0.0747 0.0571 0.664 NK_CD56bright L2
ENSG00000111142 METAP2 910108 sc-eQTL 6.96e-01 0.0379 0.0968 0.664 NK_CD56bright L2
ENSG00000111144 LTA4H 340108 sc-eQTL 8.96e-01 -0.0111 0.0849 0.664 NK_CD56bright L2
ENSG00000111145 ELK3 189253 sc-eQTL 7.58e-01 0.0277 0.09 0.664 NK_CD56bright L2
ENSG00000139343 SNRPF 524700 sc-eQTL 8.87e-01 -0.0134 0.0942 0.664 NK_CD56bright L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 8.94e-01 -0.0127 0.0951 0.664 NK_CD56bright L2
ENSG00000059758 CDK17 -16852 sc-eQTL 6.15e-03 0.134 0.0486 0.664 NK_CD56dim L2
ENSG00000111142 METAP2 910108 sc-eQTL 8.81e-01 -0.0129 0.0866 0.664 NK_CD56dim L2
ENSG00000111144 LTA4H 340108 sc-eQTL 4.09e-01 -0.0738 0.0892 0.664 NK_CD56dim L2
ENSG00000111145 ELK3 189253 sc-eQTL 4.35e-01 -0.0617 0.079 0.664 NK_CD56dim L2
ENSG00000139343 SNRPF 524700 sc-eQTL 2.14e-01 -0.0935 0.075 0.664 NK_CD56dim L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 4.30e-02 -0.175 0.0858 0.664 NK_CD56dim L2
ENSG00000059758 CDK17 -16852 sc-eQTL 3.98e-01 -0.0644 0.076 0.667 NK_HLA L2
ENSG00000111142 METAP2 910108 sc-eQTL 4.06e-01 0.0796 0.0957 0.667 NK_HLA L2
ENSG00000111144 LTA4H 340108 sc-eQTL 2.91e-01 -0.105 0.0995 0.667 NK_HLA L2
ENSG00000111145 ELK3 189253 sc-eQTL 3.00e-01 0.0959 0.0923 0.667 NK_HLA L2
ENSG00000139343 SNRPF 524700 sc-eQTL 8.83e-01 -0.0142 0.0964 0.667 NK_HLA L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 3.89e-01 -0.0786 0.0911 0.667 NK_HLA L2
ENSG00000059758 CDK17 -16852 sc-eQTL 4.36e-01 0.0422 0.054 0.664 NK_cytokine L2
ENSG00000111142 METAP2 910108 sc-eQTL 9.31e-01 0.00782 0.0898 0.664 NK_cytokine L2
ENSG00000111144 LTA4H 340108 sc-eQTL 9.26e-01 0.00849 0.0914 0.664 NK_cytokine L2
ENSG00000111145 ELK3 189253 sc-eQTL 6.06e-01 0.0452 0.0875 0.664 NK_cytokine L2
ENSG00000139343 SNRPF 524700 sc-eQTL 6.60e-01 -0.0327 0.0741 0.664 NK_cytokine L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 1.60e-01 -0.129 0.0913 0.664 NK_cytokine L2
ENSG00000059758 CDK17 -16852 sc-eQTL 4.48e-01 0.0752 0.0988 0.663 PB L2
ENSG00000111142 METAP2 910108 sc-eQTL 5.08e-01 0.0767 0.116 0.663 PB L2
ENSG00000111144 LTA4H 340108 sc-eQTL 3.65e-01 -0.0792 0.087 0.663 PB L2
ENSG00000111145 ELK3 189253 sc-eQTL 6.98e-01 0.0436 0.112 0.663 PB L2
ENSG00000136014 USP44 832152 sc-eQTL 2.21e-01 -0.127 0.103 0.663 PB L2
ENSG00000139343 SNRPF 524700 sc-eQTL 4.52e-01 -0.0822 0.109 0.663 PB L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 7.32e-01 0.0445 0.13 0.663 PB L2
ENSG00000059758 CDK17 -16852 sc-eQTL 9.43e-01 -0.0043 0.0606 0.661 Pro_T L2
ENSG00000074527 NTN4 592476 sc-eQTL 3.97e-01 0.0577 0.0679 0.661 Pro_T L2
ENSG00000111142 METAP2 910108 sc-eQTL 8.78e-01 0.0124 0.0804 0.661 Pro_T L2
ENSG00000111144 LTA4H 340108 sc-eQTL 3.51e-01 -0.0747 0.0799 0.661 Pro_T L2
ENSG00000111145 ELK3 189253 sc-eQTL 2.44e-01 -0.113 0.0965 0.661 Pro_T L2
ENSG00000139343 SNRPF 524700 sc-eQTL 9.21e-01 -0.00605 0.061 0.661 Pro_T L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 9.91e-01 0.00101 0.0887 0.661 Pro_T L2
ENSG00000188596 CFAP54 -105943 sc-eQTL 4.84e-01 -0.0502 0.0716 0.661 Pro_T L2
ENSG00000059758 CDK17 -16852 sc-eQTL 2.93e-01 -0.0704 0.0668 0.662 Treg L2
ENSG00000111142 METAP2 910108 sc-eQTL 9.14e-01 0.00984 0.0911 0.662 Treg L2
ENSG00000111144 LTA4H 340108 sc-eQTL 5.71e-01 -0.0481 0.0847 0.662 Treg L2
ENSG00000111145 ELK3 189253 sc-eQTL 5.25e-01 -0.0488 0.0767 0.662 Treg L2
ENSG00000136014 USP44 832152 sc-eQTL 4.39e-01 0.0668 0.0861 0.662 Treg L2
ENSG00000139343 SNRPF 524700 sc-eQTL 2.57e-02 0.198 0.0879 0.662 Treg L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 9.30e-01 -0.00872 0.0993 0.662 Treg L2
ENSG00000059758 CDK17 -16852 sc-eQTL 6.88e-01 0.0322 0.08 0.649 cDC L2
ENSG00000084110 HAL 387263 sc-eQTL 9.99e-01 0.000104 0.0832 0.649 cDC L2
ENSG00000111142 METAP2 910108 sc-eQTL 5.71e-01 0.0569 0.1 0.649 cDC L2
ENSG00000111144 LTA4H 340108 sc-eQTL 1.42e-01 0.105 0.0709 0.649 cDC L2
ENSG00000111145 ELK3 189253 sc-eQTL 6.88e-02 0.171 0.0933 0.649 cDC L2
ENSG00000139343 SNRPF 524700 sc-eQTL 4.63e-01 -0.0578 0.0787 0.649 cDC L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 9.72e-01 -0.00333 0.096 0.649 cDC L2
ENSG00000257715 AC007298.1 358305 sc-eQTL 9.71e-01 0.00297 0.081 0.649 cDC L2
ENSG00000059758 CDK17 -16852 sc-eQTL 6.15e-04 -0.241 0.0693 0.662 cMono_IL1B L2
ENSG00000084110 HAL 387263 sc-eQTL 2.71e-01 0.0857 0.0775 0.662 cMono_IL1B L2
ENSG00000111142 METAP2 910108 sc-eQTL 1.16e-01 0.127 0.0802 0.662 cMono_IL1B L2
ENSG00000111144 LTA4H 340108 sc-eQTL 9.37e-01 0.00667 0.084 0.662 cMono_IL1B L2
ENSG00000111145 ELK3 189253 sc-eQTL 9.27e-01 -0.0059 0.0647 0.662 cMono_IL1B L2
ENSG00000139343 SNRPF 524700 sc-eQTL 7.60e-01 0.0205 0.0667 0.662 cMono_IL1B L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 8.00e-01 -0.0233 0.0919 0.662 cMono_IL1B L2
ENSG00000257715 AC007298.1 358305 sc-eQTL 5.29e-02 0.166 0.085 0.662 cMono_IL1B L2
ENSG00000059758 CDK17 -16852 sc-eQTL 6.87e-02 -0.147 0.0803 0.662 cMono_S100A L2
ENSG00000084110 HAL 387263 sc-eQTL 1.71e-01 0.124 0.0904 0.662 cMono_S100A L2
ENSG00000111142 METAP2 910108 sc-eQTL 9.25e-02 0.154 0.0913 0.662 cMono_S100A L2
ENSG00000111144 LTA4H 340108 sc-eQTL 9.46e-01 0.00615 0.0907 0.662 cMono_S100A L2
ENSG00000111145 ELK3 189253 sc-eQTL 3.52e-01 0.0687 0.0737 0.662 cMono_S100A L2
ENSG00000139343 SNRPF 524700 sc-eQTL 2.67e-02 -0.161 0.0722 0.662 cMono_S100A L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 2.13e-01 -0.123 0.0982 0.662 cMono_S100A L2
ENSG00000257715 AC007298.1 358305 sc-eQTL 6.26e-01 0.0452 0.0927 0.662 cMono_S100A L2
ENSG00000059758 CDK17 -16852 sc-eQTL 7.81e-01 0.0213 0.0764 0.664 gdT L2
ENSG00000074527 NTN4 592476 sc-eQTL 6.47e-01 -0.0402 0.0877 0.664 gdT L2
ENSG00000111142 METAP2 910108 sc-eQTL 7.33e-01 -0.0375 0.11 0.664 gdT L2
ENSG00000111144 LTA4H 340108 sc-eQTL 4.02e-01 0.0959 0.114 0.664 gdT L2
ENSG00000111145 ELK3 189253 sc-eQTL 7.75e-02 0.186 0.105 0.664 gdT L2
ENSG00000139343 SNRPF 524700 sc-eQTL 1.96e-02 0.236 0.1 0.664 gdT L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 3.33e-01 -0.109 0.112 0.664 gdT L2
ENSG00000188596 CFAP54 -105943 sc-eQTL 4.64e-01 0.0724 0.0986 0.664 gdT L2
ENSG00000059758 CDK17 -16852 sc-eQTL 3.91e-01 0.078 0.0907 0.658 intMono L2
ENSG00000084110 HAL 387263 sc-eQTL 4.56e-01 0.0686 0.0918 0.658 intMono L2
ENSG00000111142 METAP2 910108 sc-eQTL 9.38e-01 0.00811 0.104 0.658 intMono L2
ENSG00000111144 LTA4H 340108 sc-eQTL 1.10e-01 0.15 0.0937 0.658 intMono L2
ENSG00000111145 ELK3 189253 sc-eQTL 9.10e-01 0.00948 0.084 0.658 intMono L2
ENSG00000139343 SNRPF 524700 sc-eQTL 1.05e-02 -0.228 0.0883 0.658 intMono L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 8.44e-01 -0.0184 0.0933 0.658 intMono L2
ENSG00000257715 AC007298.1 358305 sc-eQTL 2.90e-01 0.0993 0.0935 0.658 intMono L2
ENSG00000059758 CDK17 -16852 sc-eQTL 5.64e-01 0.0422 0.0729 0.661 ncMono L2
ENSG00000084110 HAL 387263 sc-eQTL 7.98e-01 -0.0208 0.0815 0.661 ncMono L2
ENSG00000111142 METAP2 910108 sc-eQTL 6.89e-01 0.0395 0.0985 0.661 ncMono L2
ENSG00000111144 LTA4H 340108 sc-eQTL 3.73e-01 0.081 0.0907 0.661 ncMono L2
ENSG00000111145 ELK3 189253 sc-eQTL 8.25e-01 -0.0173 0.078 0.661 ncMono L2
ENSG00000139343 SNRPF 524700 sc-eQTL 4.56e-02 -0.159 0.0789 0.661 ncMono L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 9.03e-01 -0.0104 0.0846 0.661 ncMono L2
ENSG00000257715 AC007298.1 358305 sc-eQTL 9.93e-01 -0.000802 0.0966 0.661 ncMono L2
ENSG00000059758 CDK17 -16852 sc-eQTL 7.90e-01 -0.0254 0.0955 0.658 pDC L2
ENSG00000084110 HAL 387263 sc-eQTL 6.41e-03 0.218 0.0787 0.658 pDC L2
ENSG00000111142 METAP2 910108 sc-eQTL 4.21e-01 0.0877 0.109 0.658 pDC L2
ENSG00000111144 LTA4H 340108 sc-eQTL 4.29e-01 -0.0715 0.0901 0.658 pDC L2
ENSG00000111145 ELK3 189253 sc-eQTL 3.99e-01 0.0931 0.11 0.658 pDC L2
ENSG00000139343 SNRPF 524700 sc-eQTL 7.81e-01 -0.0268 0.0963 0.658 pDC L2
ENSG00000139350 NEDD1 -523595 sc-eQTL 1.64e-01 0.148 0.106 0.658 pDC L2
ENSG00000257715 AC007298.1 358305 sc-eQTL 8.42e-01 0.0182 0.0912 0.658 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -16852 sc-eQTL 9.84e-01 -0.00125 0.0628 0.662 B_Memory LOneK1K
ENSG00000111142 METAP2 910108 sc-eQTL 4.39e-01 0.0676 0.0872 0.662 B_Memory LOneK1K
ENSG00000111144 LTA4H 340108 sc-eQTL 3.10e-01 0.0662 0.065 0.662 B_Memory LOneK1K
ENSG00000111145 ELK3 189253 sc-eQTL 1.97e-01 -0.096 0.0742 0.662 B_Memory LOneK1K
ENSG00000136014 USP44 832152 sc-eQTL 8.09e-01 -0.0225 0.0929 0.662 B_Memory LOneK1K
ENSG00000139343 SNRPF 524700 sc-eQTL 2.76e-01 0.0787 0.072 0.662 B_Memory LOneK1K
ENSG00000139350 NEDD1 -523595 sc-eQTL 6.89e-02 -0.172 0.094 0.662 B_Memory LOneK1K
ENSG00000059758 CDK17 -16852 sc-eQTL 2.12e-01 -0.0679 0.0542 0.662 B_Naive LOneK1K
ENSG00000111142 METAP2 910108 sc-eQTL 9.94e-01 -0.000546 0.0737 0.662 B_Naive LOneK1K
ENSG00000111144 LTA4H 340108 sc-eQTL 4.54e-01 0.0458 0.061 0.662 B_Naive LOneK1K
ENSG00000111145 ELK3 189253 sc-eQTL 1.77e-01 -0.0939 0.0693 0.662 B_Naive LOneK1K
ENSG00000136014 USP44 832152 sc-eQTL 8.38e-01 -0.0174 0.0851 0.662 B_Naive LOneK1K
ENSG00000139343 SNRPF 524700 sc-eQTL 3.62e-01 0.0638 0.0699 0.662 B_Naive LOneK1K
ENSG00000139350 NEDD1 -523595 sc-eQTL 1.59e-01 0.131 0.0923 0.662 B_Naive LOneK1K
ENSG00000059758 CDK17 -16852 sc-eQTL 6.90e-04 -0.22 0.0638 0.662 CD14_Mono LOneK1K
ENSG00000084110 HAL 387263 sc-eQTL 2.38e-01 0.0937 0.0792 0.662 CD14_Mono LOneK1K
ENSG00000111142 METAP2 910108 sc-eQTL 7.18e-02 0.134 0.0742 0.662 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 340108 sc-eQTL 5.41e-01 0.0533 0.0871 0.662 CD14_Mono LOneK1K
ENSG00000111145 ELK3 189253 sc-eQTL 8.00e-01 0.016 0.063 0.662 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 524700 sc-eQTL 2.86e-01 -0.0648 0.0606 0.662 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -523595 sc-eQTL 3.28e-01 -0.0932 0.0951 0.662 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 358305 sc-eQTL 1.03e-01 0.144 0.0878 0.662 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -16852 sc-eQTL 8.63e-01 0.0114 0.0663 0.664 CD16_Mono LOneK1K
ENSG00000084110 HAL 387263 sc-eQTL 7.34e-01 0.0267 0.0784 0.664 CD16_Mono LOneK1K
ENSG00000111142 METAP2 910108 sc-eQTL 5.05e-01 0.0593 0.0888 0.664 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 340108 sc-eQTL 4.59e-01 0.0643 0.0868 0.664 CD16_Mono LOneK1K
ENSG00000111145 ELK3 189253 sc-eQTL 3.37e-01 -0.0618 0.0642 0.664 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 524700 sc-eQTL 6.66e-02 -0.121 0.0658 0.664 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -523595 sc-eQTL 4.32e-01 -0.0668 0.0849 0.664 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 358305 sc-eQTL 8.81e-01 0.0135 0.09 0.664 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -16852 sc-eQTL 5.50e-02 0.0883 0.0458 0.664 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 910108 sc-eQTL 9.62e-01 -0.00336 0.0703 0.664 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 340108 sc-eQTL 9.07e-01 -0.00937 0.0803 0.664 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 189253 sc-eQTL 8.62e-01 0.0128 0.0735 0.664 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 524700 sc-eQTL 2.39e-01 -0.074 0.0627 0.664 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -523595 sc-eQTL 3.86e-02 -0.162 0.0776 0.664 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 189253 eQTL 4.78e-06 -0.0826 0.018 0.0 0.0 0.333

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 ELK3 189253 2.78e-06 3.15e-06 2.51e-07 1.57e-06 4.74e-07 7.77e-07 1.87e-06 3.77e-07 1.74e-06 6.94e-07 2.11e-06 1.32e-06 3.39e-06 1.44e-06 6.59e-07 1.15e-06 1.18e-06 1.73e-06 6.34e-07 6.44e-07 6.19e-07 2.8e-06 2.04e-06 6.51e-07 3.59e-06 1.05e-06 1.01e-06 1.05e-06 1.88e-06 1.79e-06 1.65e-06 2.44e-07 3.25e-07 5.59e-07 8.35e-07 6.18e-07 7.02e-07 3.43e-07 7.16e-07 2.93e-07 2.57e-07 3.71e-06 4.07e-07 1.32e-07 3.26e-07 2.74e-07 2.3e-07 3.77e-08 1.58e-07
ENSG00000188596 \N -105947 5.28e-06 7.72e-06 8.15e-07 3.09e-06 1.32e-06 1.66e-06 7.26e-06 9.93e-07 4.91e-06 2.45e-06 6.52e-06 3.54e-06 9.33e-06 2.02e-06 1.23e-06 3.81e-06 2.24e-06 3.8e-06 1.61e-06 1.02e-06 2.88e-06 5.39e-06 4.6e-06 1.55e-06 9.06e-06 1.91e-06 2.57e-06 1.77e-06 4.56e-06 5.42e-06 2.58e-06 5.93e-07 7.52e-07 1.8e-06 2.15e-06 9.6e-07 9.14e-07 4.93e-07 8.31e-07 3.81e-07 1.67e-07 8.2e-06 3.83e-07 1.74e-07 3.64e-07 3.94e-07 8.74e-07 2.62e-07 1.74e-07