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Genes within 1Mb (chr12:96377611:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -22869 sc-eQTL 9.64e-01 -0.00218 0.048 0.645 B L1
ENSG00000111142 METAP2 904091 sc-eQTL 9.85e-01 -0.00125 0.068 0.645 B L1
ENSG00000111144 LTA4H 334091 sc-eQTL 7.24e-01 0.0211 0.0597 0.645 B L1
ENSG00000111145 ELK3 183236 sc-eQTL 2.48e-01 -0.0734 0.0633 0.645 B L1
ENSG00000136014 USP44 826135 sc-eQTL 8.93e-01 0.0105 0.0783 0.645 B L1
ENSG00000139343 SNRPF 518683 sc-eQTL 8.96e-01 0.00755 0.0577 0.645 B L1
ENSG00000139350 NEDD1 -529612 sc-eQTL 6.56e-01 0.0375 0.0842 0.645 B L1
ENSG00000059758 CDK17 -22869 sc-eQTL 9.96e-01 0.000179 0.0396 0.645 CD4T L1
ENSG00000111142 METAP2 904091 sc-eQTL 7.44e-01 0.018 0.0552 0.645 CD4T L1
ENSG00000111144 LTA4H 334091 sc-eQTL 3.72e-02 -0.113 0.0538 0.645 CD4T L1
ENSG00000111145 ELK3 183236 sc-eQTL 6.24e-01 -0.0288 0.0588 0.645 CD4T L1
ENSG00000136014 USP44 826135 sc-eQTL 9.79e-01 0.00218 0.0839 0.645 CD4T L1
ENSG00000139343 SNRPF 518683 sc-eQTL 6.59e-01 -0.0227 0.0514 0.645 CD4T L1
ENSG00000139350 NEDD1 -529612 sc-eQTL 9.63e-01 -0.00291 0.0633 0.645 CD4T L1
ENSG00000059758 CDK17 -22869 sc-eQTL 9.16e-01 -0.00428 0.0406 0.645 CD8T L1
ENSG00000111142 METAP2 904091 sc-eQTL 6.89e-01 0.0262 0.0655 0.645 CD8T L1
ENSG00000111144 LTA4H 334091 sc-eQTL 4.47e-01 -0.0331 0.0435 0.645 CD8T L1
ENSG00000111145 ELK3 183236 sc-eQTL 5.24e-01 -0.0418 0.0655 0.645 CD8T L1
ENSG00000136014 USP44 826135 sc-eQTL 8.64e-01 -0.0128 0.0746 0.645 CD8T L1
ENSG00000139343 SNRPF 518683 sc-eQTL 4.00e-01 0.0453 0.0536 0.645 CD8T L1
ENSG00000139350 NEDD1 -529612 sc-eQTL 4.93e-02 -0.14 0.0708 0.645 CD8T L1
ENSG00000059758 CDK17 -22869 sc-eQTL 5.11e-01 -0.0488 0.0741 0.642 DC L1
ENSG00000084110 HAL 381246 sc-eQTL 2.50e-01 0.097 0.0841 0.642 DC L1
ENSG00000111142 METAP2 904091 sc-eQTL 7.28e-01 0.0324 0.093 0.642 DC L1
ENSG00000111144 LTA4H 334091 sc-eQTL 9.75e-01 -0.00214 0.069 0.642 DC L1
ENSG00000111145 ELK3 183236 sc-eQTL 8.90e-02 0.143 0.0839 0.642 DC L1
ENSG00000139343 SNRPF 518683 sc-eQTL 7.79e-01 -0.0198 0.0703 0.642 DC L1
ENSG00000139350 NEDD1 -529612 sc-eQTL 7.57e-01 0.028 0.0902 0.642 DC L1
ENSG00000257715 AC007298.1 352288 sc-eQTL 2.08e-01 -0.102 0.0811 0.642 DC L1
ENSG00000059758 CDK17 -22869 sc-eQTL 4.50e-02 -0.125 0.0622 0.645 Mono L1
ENSG00000084110 HAL 381246 sc-eQTL 1.52e-01 0.113 0.0787 0.645 Mono L1
ENSG00000111142 METAP2 904091 sc-eQTL 1.88e-01 0.0898 0.068 0.645 Mono L1
ENSG00000111144 LTA4H 334091 sc-eQTL 9.52e-01 -0.00536 0.0893 0.645 Mono L1
ENSG00000111145 ELK3 183236 sc-eQTL 9.31e-01 0.00518 0.06 0.645 Mono L1
ENSG00000139343 SNRPF 518683 sc-eQTL 8.97e-02 -0.0957 0.0561 0.645 Mono L1
ENSG00000139350 NEDD1 -529612 sc-eQTL 1.57e-01 -0.123 0.0864 0.645 Mono L1
ENSG00000257715 AC007298.1 352288 sc-eQTL 4.90e-01 0.058 0.084 0.645 Mono L1
ENSG00000059758 CDK17 -22869 sc-eQTL 2.64e-02 0.099 0.0443 0.646 NK L1
ENSG00000111142 METAP2 904091 sc-eQTL 9.82e-01 0.00148 0.0663 0.646 NK L1
ENSG00000111144 LTA4H 334091 sc-eQTL 8.15e-01 0.0178 0.0761 0.646 NK L1
ENSG00000111145 ELK3 183236 sc-eQTL 5.53e-01 0.0429 0.0721 0.646 NK L1
ENSG00000139343 SNRPF 518683 sc-eQTL 2.97e-01 -0.0624 0.0597 0.646 NK L1
ENSG00000139350 NEDD1 -529612 sc-eQTL 3.20e-02 -0.162 0.0749 0.646 NK L1
ENSG00000059758 CDK17 -22869 sc-eQTL 1.78e-01 -0.0502 0.0371 0.645 Other_T L1
ENSG00000074527 NTN4 586459 sc-eQTL 8.21e-01 0.0157 0.0689 0.645 Other_T L1
ENSG00000111142 METAP2 904091 sc-eQTL 4.44e-01 0.0545 0.0711 0.645 Other_T L1
ENSG00000111144 LTA4H 334091 sc-eQTL 8.23e-01 -0.0174 0.0779 0.645 Other_T L1
ENSG00000111145 ELK3 183236 sc-eQTL 9.13e-01 0.00667 0.0608 0.645 Other_T L1
ENSG00000139343 SNRPF 518683 sc-eQTL 6.82e-01 0.0232 0.0565 0.645 Other_T L1
ENSG00000139350 NEDD1 -529612 sc-eQTL 5.33e-01 -0.0537 0.086 0.645 Other_T L1
ENSG00000188596 CFAP54 -111960 sc-eQTL 8.14e-01 0.021 0.0891 0.645 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -22869 sc-eQTL 8.84e-01 0.0125 0.0855 0.648 B_Activated L2
ENSG00000111142 METAP2 904091 sc-eQTL 9.32e-02 0.18 0.107 0.648 B_Activated L2
ENSG00000111144 LTA4H 334091 sc-eQTL 7.82e-01 0.0268 0.0968 0.648 B_Activated L2
ENSG00000111145 ELK3 183236 sc-eQTL 3.46e-01 0.0967 0.102 0.648 B_Activated L2
ENSG00000136014 USP44 826135 sc-eQTL 6.45e-01 -0.0363 0.0787 0.648 B_Activated L2
ENSG00000139343 SNRPF 518683 sc-eQTL 8.98e-01 -0.0125 0.0967 0.648 B_Activated L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 6.21e-01 -0.05 0.101 0.648 B_Activated L2
ENSG00000059758 CDK17 -22869 sc-eQTL 7.67e-01 -0.0218 0.0732 0.644 B_Intermediate L2
ENSG00000111142 METAP2 904091 sc-eQTL 6.25e-01 -0.0411 0.0839 0.644 B_Intermediate L2
ENSG00000111144 LTA4H 334091 sc-eQTL 8.75e-01 0.0111 0.0709 0.644 B_Intermediate L2
ENSG00000111145 ELK3 183236 sc-eQTL 2.88e-01 -0.0851 0.0798 0.644 B_Intermediate L2
ENSG00000136014 USP44 826135 sc-eQTL 6.73e-01 -0.0399 0.0943 0.644 B_Intermediate L2
ENSG00000139343 SNRPF 518683 sc-eQTL 8.96e-01 -0.0105 0.0797 0.644 B_Intermediate L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 3.71e-01 -0.0835 0.0931 0.644 B_Intermediate L2
ENSG00000059758 CDK17 -22869 sc-eQTL 6.60e-01 0.0315 0.0715 0.642 B_Memory L2
ENSG00000111142 METAP2 904091 sc-eQTL 4.45e-01 0.0711 0.0929 0.642 B_Memory L2
ENSG00000111144 LTA4H 334091 sc-eQTL 9.35e-01 -0.00675 0.0826 0.642 B_Memory L2
ENSG00000111145 ELK3 183236 sc-eQTL 5.42e-01 -0.0496 0.0812 0.642 B_Memory L2
ENSG00000136014 USP44 826135 sc-eQTL 7.98e-01 0.0228 0.0891 0.642 B_Memory L2
ENSG00000139343 SNRPF 518683 sc-eQTL 2.09e-01 0.108 0.0858 0.642 B_Memory L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 2.12e-01 -0.119 0.0949 0.642 B_Memory L2
ENSG00000059758 CDK17 -22869 sc-eQTL 2.32e-01 -0.0716 0.0597 0.645 B_Naive1 L2
ENSG00000111142 METAP2 904091 sc-eQTL 8.57e-01 -0.014 0.0775 0.645 B_Naive1 L2
ENSG00000111144 LTA4H 334091 sc-eQTL 7.20e-01 -0.0226 0.0627 0.645 B_Naive1 L2
ENSG00000111145 ELK3 183236 sc-eQTL 5.57e-01 -0.0436 0.0741 0.645 B_Naive1 L2
ENSG00000136014 USP44 826135 sc-eQTL 8.83e-01 -0.0137 0.0933 0.645 B_Naive1 L2
ENSG00000139343 SNRPF 518683 sc-eQTL 3.46e-01 0.068 0.072 0.645 B_Naive1 L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 8.44e-01 0.0183 0.0925 0.645 B_Naive1 L2
ENSG00000059758 CDK17 -22869 sc-eQTL 6.76e-01 0.031 0.0742 0.644 B_Naive2 L2
ENSG00000111142 METAP2 904091 sc-eQTL 3.58e-01 0.0825 0.0894 0.644 B_Naive2 L2
ENSG00000111144 LTA4H 334091 sc-eQTL 8.09e-01 -0.017 0.0703 0.644 B_Naive2 L2
ENSG00000111145 ELK3 183236 sc-eQTL 8.57e-01 -0.015 0.0829 0.644 B_Naive2 L2
ENSG00000136014 USP44 826135 sc-eQTL 6.57e-01 -0.0398 0.0895 0.644 B_Naive2 L2
ENSG00000139343 SNRPF 518683 sc-eQTL 1.79e-01 0.111 0.082 0.644 B_Naive2 L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 1.88e-01 0.129 0.0975 0.644 B_Naive2 L2
ENSG00000059758 CDK17 -22869 sc-eQTL 6.03e-01 -0.0363 0.0696 0.639 CD4_CTL L2
ENSG00000111142 METAP2 904091 sc-eQTL 3.28e-01 0.0975 0.0995 0.639 CD4_CTL L2
ENSG00000111144 LTA4H 334091 sc-eQTL 9.47e-02 -0.164 0.0976 0.639 CD4_CTL L2
ENSG00000111145 ELK3 183236 sc-eQTL 8.68e-01 0.0166 0.0995 0.639 CD4_CTL L2
ENSG00000136014 USP44 826135 sc-eQTL 3.46e-01 0.0748 0.0792 0.639 CD4_CTL L2
ENSG00000139343 SNRPF 518683 sc-eQTL 9.13e-01 -0.00948 0.0865 0.639 CD4_CTL L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 3.64e-01 -0.0908 0.0998 0.639 CD4_CTL L2
ENSG00000059758 CDK17 -22869 sc-eQTL 4.73e-01 0.0314 0.0436 0.645 CD4_Naive L2
ENSG00000111142 METAP2 904091 sc-eQTL 4.85e-01 0.044 0.0629 0.645 CD4_Naive L2
ENSG00000111144 LTA4H 334091 sc-eQTL 9.24e-03 -0.163 0.0622 0.645 CD4_Naive L2
ENSG00000111145 ELK3 183236 sc-eQTL 6.87e-01 -0.0255 0.0632 0.645 CD4_Naive L2
ENSG00000136014 USP44 826135 sc-eQTL 9.86e-01 0.0016 0.0885 0.645 CD4_Naive L2
ENSG00000139343 SNRPF 518683 sc-eQTL 8.35e-01 -0.0117 0.0561 0.645 CD4_Naive L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 2.87e-01 -0.0737 0.0689 0.645 CD4_Naive L2
ENSG00000059758 CDK17 -22869 sc-eQTL 5.37e-01 -0.0261 0.0422 0.645 CD4_TCM L2
ENSG00000111142 METAP2 904091 sc-eQTL 3.87e-01 -0.0623 0.0719 0.645 CD4_TCM L2
ENSG00000111144 LTA4H 334091 sc-eQTL 7.10e-01 0.0267 0.0717 0.645 CD4_TCM L2
ENSG00000111145 ELK3 183236 sc-eQTL 5.21e-01 -0.0453 0.0705 0.645 CD4_TCM L2
ENSG00000136014 USP44 826135 sc-eQTL 7.84e-01 -0.0268 0.0976 0.645 CD4_TCM L2
ENSG00000139343 SNRPF 518683 sc-eQTL 7.28e-01 -0.0202 0.0579 0.645 CD4_TCM L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 3.68e-01 0.0713 0.0789 0.645 CD4_TCM L2
ENSG00000059758 CDK17 -22869 sc-eQTL 2.58e-01 0.0583 0.0514 0.645 CD4_TEM L2
ENSG00000111142 METAP2 904091 sc-eQTL 5.32e-01 0.0539 0.0862 0.645 CD4_TEM L2
ENSG00000111144 LTA4H 334091 sc-eQTL 7.92e-01 -0.021 0.0797 0.645 CD4_TEM L2
ENSG00000111145 ELK3 183236 sc-eQTL 8.99e-01 -0.00939 0.074 0.645 CD4_TEM L2
ENSG00000136014 USP44 826135 sc-eQTL 9.15e-01 0.00968 0.0911 0.645 CD4_TEM L2
ENSG00000139343 SNRPF 518683 sc-eQTL 1.28e-01 -0.118 0.0771 0.645 CD4_TEM L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 5.39e-01 0.0565 0.0918 0.645 CD4_TEM L2
ENSG00000059758 CDK17 -22869 sc-eQTL 5.56e-01 0.03 0.0508 0.645 CD8_CTL L2
ENSG00000111142 METAP2 904091 sc-eQTL 5.00e-01 -0.0592 0.0878 0.645 CD8_CTL L2
ENSG00000111144 LTA4H 334091 sc-eQTL 8.91e-01 0.0125 0.0918 0.645 CD8_CTL L2
ENSG00000111145 ELK3 183236 sc-eQTL 1.83e-01 0.111 0.0832 0.645 CD8_CTL L2
ENSG00000136014 USP44 826135 sc-eQTL 9.92e-01 0.000961 0.0931 0.645 CD8_CTL L2
ENSG00000139343 SNRPF 518683 sc-eQTL 9.89e-01 0.00111 0.0768 0.645 CD8_CTL L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 9.89e-01 0.00115 0.0861 0.645 CD8_CTL L2
ENSG00000059758 CDK17 -22869 sc-eQTL 9.89e-01 -0.000818 0.0604 0.645 CD8_Naive L2
ENSG00000111142 METAP2 904091 sc-eQTL 1.27e-01 0.122 0.0798 0.645 CD8_Naive L2
ENSG00000111144 LTA4H 334091 sc-eQTL 6.66e-01 0.0313 0.0723 0.645 CD8_Naive L2
ENSG00000111145 ELK3 183236 sc-eQTL 8.36e-01 0.0159 0.0765 0.645 CD8_Naive L2
ENSG00000136014 USP44 826135 sc-eQTL 5.49e-01 -0.0482 0.0803 0.645 CD8_Naive L2
ENSG00000139343 SNRPF 518683 sc-eQTL 7.32e-01 -0.0236 0.0688 0.645 CD8_Naive L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 1.43e-01 -0.12 0.0815 0.645 CD8_Naive L2
ENSG00000059758 CDK17 -22869 sc-eQTL 8.94e-01 0.00904 0.0675 0.639 CD8_TCM L2
ENSG00000111142 METAP2 904091 sc-eQTL 9.72e-01 0.00351 0.101 0.639 CD8_TCM L2
ENSG00000111144 LTA4H 334091 sc-eQTL 9.98e-01 -0.000191 0.0992 0.639 CD8_TCM L2
ENSG00000111145 ELK3 183236 sc-eQTL 5.19e-01 -0.0542 0.0839 0.639 CD8_TCM L2
ENSG00000136014 USP44 826135 sc-eQTL 4.32e-01 0.0715 0.0908 0.639 CD8_TCM L2
ENSG00000139343 SNRPF 518683 sc-eQTL 8.67e-01 0.0162 0.0967 0.639 CD8_TCM L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 1.58e-01 -0.134 0.0942 0.639 CD8_TCM L2
ENSG00000059758 CDK17 -22869 sc-eQTL 1.71e-01 0.113 0.0824 0.658 CD8_TEM L2
ENSG00000111142 METAP2 904091 sc-eQTL 9.46e-01 0.00664 0.0972 0.658 CD8_TEM L2
ENSG00000111144 LTA4H 334091 sc-eQTL 8.06e-01 -0.0249 0.101 0.658 CD8_TEM L2
ENSG00000111145 ELK3 183236 sc-eQTL 1.87e-01 -0.131 0.0992 0.658 CD8_TEM L2
ENSG00000136014 USP44 826135 sc-eQTL 3.68e-01 0.0764 0.0847 0.658 CD8_TEM L2
ENSG00000139343 SNRPF 518683 sc-eQTL 9.11e-01 0.0104 0.0926 0.658 CD8_TEM L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 6.49e-02 -0.185 0.0997 0.658 CD8_TEM L2
ENSG00000059758 CDK17 -22869 sc-eQTL 5.27e-02 -0.105 0.0539 0.647 MAIT L2
ENSG00000074527 NTN4 586459 sc-eQTL 6.88e-01 0.0295 0.0733 0.647 MAIT L2
ENSG00000111142 METAP2 904091 sc-eQTL 1.80e-01 0.124 0.0919 0.647 MAIT L2
ENSG00000111144 LTA4H 334091 sc-eQTL 8.78e-01 0.0129 0.0841 0.647 MAIT L2
ENSG00000111145 ELK3 183236 sc-eQTL 6.81e-01 -0.0291 0.0705 0.647 MAIT L2
ENSG00000139343 SNRPF 518683 sc-eQTL 8.25e-01 -0.0181 0.0817 0.647 MAIT L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 5.36e-01 -0.0569 0.0917 0.647 MAIT L2
ENSG00000188596 CFAP54 -111960 sc-eQTL 7.58e-01 0.0281 0.0909 0.647 MAIT L2
ENSG00000059758 CDK17 -22869 sc-eQTL 2.68e-01 0.063 0.0568 0.647 NK_CD56bright L2
ENSG00000111142 METAP2 904091 sc-eQTL 5.67e-01 0.0551 0.0961 0.647 NK_CD56bright L2
ENSG00000111144 LTA4H 334091 sc-eQTL 9.62e-01 -0.00405 0.0843 0.647 NK_CD56bright L2
ENSG00000111145 ELK3 183236 sc-eQTL 5.96e-01 0.0475 0.0894 0.647 NK_CD56bright L2
ENSG00000139343 SNRPF 518683 sc-eQTL 9.92e-01 -0.00094 0.0935 0.647 NK_CD56bright L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 7.89e-01 -0.0253 0.0944 0.647 NK_CD56bright L2
ENSG00000059758 CDK17 -22869 sc-eQTL 1.28e-02 0.122 0.0485 0.647 NK_CD56dim L2
ENSG00000111142 METAP2 904091 sc-eQTL 7.30e-01 0.0297 0.0862 0.647 NK_CD56dim L2
ENSG00000111144 LTA4H 334091 sc-eQTL 6.61e-01 -0.039 0.0888 0.647 NK_CD56dim L2
ENSG00000111145 ELK3 183236 sc-eQTL 3.73e-01 -0.0701 0.0785 0.647 NK_CD56dim L2
ENSG00000139343 SNRPF 518683 sc-eQTL 1.01e-01 -0.122 0.0744 0.647 NK_CD56dim L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 3.13e-02 -0.185 0.0853 0.647 NK_CD56dim L2
ENSG00000059758 CDK17 -22869 sc-eQTL 3.20e-01 -0.0754 0.0756 0.648 NK_HLA L2
ENSG00000111142 METAP2 904091 sc-eQTL 3.22e-01 0.0945 0.0952 0.648 NK_HLA L2
ENSG00000111144 LTA4H 334091 sc-eQTL 2.89e-01 -0.105 0.099 0.648 NK_HLA L2
ENSG00000111145 ELK3 183236 sc-eQTL 3.19e-01 0.0919 0.0919 0.648 NK_HLA L2
ENSG00000139343 SNRPF 518683 sc-eQTL 9.27e-01 -0.00881 0.096 0.648 NK_HLA L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 4.00e-01 -0.0765 0.0907 0.648 NK_HLA L2
ENSG00000059758 CDK17 -22869 sc-eQTL 3.53e-01 0.0498 0.0535 0.647 NK_cytokine L2
ENSG00000111142 METAP2 904091 sc-eQTL 7.26e-01 -0.0312 0.089 0.647 NK_cytokine L2
ENSG00000111144 LTA4H 334091 sc-eQTL 7.32e-01 0.031 0.0906 0.647 NK_cytokine L2
ENSG00000111145 ELK3 183236 sc-eQTL 5.97e-01 0.0459 0.0867 0.647 NK_cytokine L2
ENSG00000139343 SNRPF 518683 sc-eQTL 6.79e-01 -0.0304 0.0734 0.647 NK_cytokine L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 1.32e-01 -0.137 0.0903 0.647 NK_cytokine L2
ENSG00000059758 CDK17 -22869 sc-eQTL 4.18e-01 0.0783 0.0962 0.641 PB L2
ENSG00000111142 METAP2 904091 sc-eQTL 6.13e-01 0.0572 0.113 0.641 PB L2
ENSG00000111144 LTA4H 334091 sc-eQTL 3.89e-01 -0.0733 0.0848 0.641 PB L2
ENSG00000111145 ELK3 183236 sc-eQTL 6.35e-01 0.0519 0.109 0.641 PB L2
ENSG00000136014 USP44 826135 sc-eQTL 1.98e-01 -0.13 0.1 0.641 PB L2
ENSG00000139343 SNRPF 518683 sc-eQTL 3.91e-01 -0.0913 0.106 0.641 PB L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 8.78e-01 0.0195 0.126 0.641 PB L2
ENSG00000059758 CDK17 -22869 sc-eQTL 6.29e-01 -0.0289 0.0596 0.643 Pro_T L2
ENSG00000074527 NTN4 586459 sc-eQTL 4.20e-01 0.054 0.0669 0.643 Pro_T L2
ENSG00000111142 METAP2 904091 sc-eQTL 6.81e-01 0.0326 0.0791 0.643 Pro_T L2
ENSG00000111144 LTA4H 334091 sc-eQTL 3.58e-01 -0.0725 0.0786 0.643 Pro_T L2
ENSG00000111145 ELK3 183236 sc-eQTL 2.33e-01 -0.114 0.095 0.643 Pro_T L2
ENSG00000139343 SNRPF 518683 sc-eQTL 8.23e-01 0.0134 0.0601 0.643 Pro_T L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 6.97e-01 -0.034 0.0872 0.643 Pro_T L2
ENSG00000188596 CFAP54 -111960 sc-eQTL 7.22e-01 -0.0251 0.0706 0.643 Pro_T L2
ENSG00000059758 CDK17 -22869 sc-eQTL 3.45e-01 -0.0627 0.0663 0.645 Treg L2
ENSG00000111142 METAP2 904091 sc-eQTL 9.98e-01 -0.000172 0.0904 0.645 Treg L2
ENSG00000111144 LTA4H 334091 sc-eQTL 5.21e-01 -0.0541 0.084 0.645 Treg L2
ENSG00000111145 ELK3 183236 sc-eQTL 7.14e-01 -0.0279 0.0762 0.645 Treg L2
ENSG00000136014 USP44 826135 sc-eQTL 4.67e-01 0.0623 0.0855 0.645 Treg L2
ENSG00000139343 SNRPF 518683 sc-eQTL 4.49e-02 0.176 0.0874 0.645 Treg L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 8.30e-01 -0.0212 0.0985 0.645 Treg L2
ENSG00000059758 CDK17 -22869 sc-eQTL 9.66e-01 0.00334 0.079 0.632 cDC L2
ENSG00000084110 HAL 381246 sc-eQTL 7.64e-01 0.0246 0.0821 0.632 cDC L2
ENSG00000111142 METAP2 904091 sc-eQTL 5.74e-01 0.0558 0.099 0.632 cDC L2
ENSG00000111144 LTA4H 334091 sc-eQTL 1.52e-01 0.101 0.0699 0.632 cDC L2
ENSG00000111145 ELK3 183236 sc-eQTL 4.58e-02 0.185 0.0918 0.632 cDC L2
ENSG00000139343 SNRPF 518683 sc-eQTL 1.87e-01 -0.102 0.0774 0.632 cDC L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 6.78e-01 -0.0394 0.0947 0.632 cDC L2
ENSG00000257715 AC007298.1 352288 sc-eQTL 9.70e-01 -0.00296 0.0798 0.632 cDC L2
ENSG00000059758 CDK17 -22869 sc-eQTL 1.99e-03 -0.215 0.0688 0.645 cMono_IL1B L2
ENSG00000084110 HAL 381246 sc-eQTL 4.02e-01 0.0644 0.0767 0.645 cMono_IL1B L2
ENSG00000111142 METAP2 904091 sc-eQTL 6.43e-02 0.147 0.079 0.645 cMono_IL1B L2
ENSG00000111144 LTA4H 334091 sc-eQTL 8.64e-01 -0.0142 0.0829 0.645 cMono_IL1B L2
ENSG00000111145 ELK3 183236 sc-eQTL 7.97e-01 -0.0165 0.0639 0.645 cMono_IL1B L2
ENSG00000139343 SNRPF 518683 sc-eQTL 7.86e-01 0.0179 0.0659 0.645 cMono_IL1B L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 7.00e-01 -0.035 0.0907 0.645 cMono_IL1B L2
ENSG00000257715 AC007298.1 352288 sc-eQTL 1.07e-01 0.136 0.0842 0.645 cMono_IL1B L2
ENSG00000059758 CDK17 -22869 sc-eQTL 1.17e-01 -0.125 0.0792 0.645 cMono_S100A L2
ENSG00000084110 HAL 381246 sc-eQTL 1.87e-01 0.118 0.0891 0.645 cMono_S100A L2
ENSG00000111142 METAP2 904091 sc-eQTL 1.67e-01 0.125 0.0901 0.645 cMono_S100A L2
ENSG00000111144 LTA4H 334091 sc-eQTL 6.89e-01 -0.0357 0.0893 0.645 cMono_S100A L2
ENSG00000111145 ELK3 183236 sc-eQTL 4.05e-01 0.0606 0.0727 0.645 cMono_S100A L2
ENSG00000139343 SNRPF 518683 sc-eQTL 1.62e-02 -0.172 0.0709 0.645 cMono_S100A L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 1.06e-01 -0.157 0.0965 0.645 cMono_S100A L2
ENSG00000257715 AC007298.1 352288 sc-eQTL 8.94e-01 0.0122 0.0914 0.645 cMono_S100A L2
ENSG00000059758 CDK17 -22869 sc-eQTL 7.39e-01 0.0255 0.0763 0.648 gdT L2
ENSG00000074527 NTN4 586459 sc-eQTL 6.44e-01 -0.0406 0.0875 0.648 gdT L2
ENSG00000111142 METAP2 904091 sc-eQTL 8.50e-01 -0.0207 0.11 0.648 gdT L2
ENSG00000111144 LTA4H 334091 sc-eQTL 2.84e-01 0.122 0.114 0.648 gdT L2
ENSG00000111145 ELK3 183236 sc-eQTL 2.33e-01 0.126 0.105 0.648 gdT L2
ENSG00000139343 SNRPF 518683 sc-eQTL 1.34e-02 0.25 0.0998 0.648 gdT L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 3.52e-01 -0.105 0.112 0.648 gdT L2
ENSG00000188596 CFAP54 -111960 sc-eQTL 3.09e-01 0.1 0.0983 0.648 gdT L2
ENSG00000059758 CDK17 -22869 sc-eQTL 6.72e-01 0.038 0.0897 0.64 intMono L2
ENSG00000084110 HAL 381246 sc-eQTL 3.49e-01 0.0849 0.0905 0.64 intMono L2
ENSG00000111142 METAP2 904091 sc-eQTL 8.91e-01 -0.0141 0.103 0.64 intMono L2
ENSG00000111144 LTA4H 334091 sc-eQTL 4.30e-01 0.0735 0.0929 0.64 intMono L2
ENSG00000111145 ELK3 183236 sc-eQTL 7.49e-01 -0.0265 0.0829 0.64 intMono L2
ENSG00000139343 SNRPF 518683 sc-eQTL 1.05e-02 -0.225 0.0872 0.64 intMono L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 4.07e-01 -0.0764 0.0919 0.64 intMono L2
ENSG00000257715 AC007298.1 352288 sc-eQTL 4.55e-01 0.0692 0.0925 0.64 intMono L2
ENSG00000059758 CDK17 -22869 sc-eQTL 5.46e-01 0.0438 0.0723 0.647 ncMono L2
ENSG00000084110 HAL 381246 sc-eQTL 7.18e-01 -0.0292 0.0808 0.647 ncMono L2
ENSG00000111142 METAP2 904091 sc-eQTL 5.06e-01 0.065 0.0976 0.647 ncMono L2
ENSG00000111144 LTA4H 334091 sc-eQTL 4.84e-01 0.0631 0.09 0.647 ncMono L2
ENSG00000111145 ELK3 183236 sc-eQTL 7.20e-01 -0.0277 0.0773 0.647 ncMono L2
ENSG00000139343 SNRPF 518683 sc-eQTL 9.94e-02 -0.13 0.0785 0.647 ncMono L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 9.12e-01 -0.0093 0.0839 0.647 ncMono L2
ENSG00000257715 AC007298.1 352288 sc-eQTL 9.43e-01 -0.0069 0.0957 0.647 ncMono L2
ENSG00000059758 CDK17 -22869 sc-eQTL 9.09e-01 -0.0109 0.0947 0.641 pDC L2
ENSG00000084110 HAL 381246 sc-eQTL 1.05e-02 0.203 0.0783 0.641 pDC L2
ENSG00000111142 METAP2 904091 sc-eQTL 3.72e-01 0.0964 0.108 0.641 pDC L2
ENSG00000111144 LTA4H 334091 sc-eQTL 3.47e-01 -0.0842 0.0893 0.641 pDC L2
ENSG00000111145 ELK3 183236 sc-eQTL 7.13e-01 0.0404 0.109 0.641 pDC L2
ENSG00000139343 SNRPF 518683 sc-eQTL 8.32e-01 0.0202 0.0955 0.641 pDC L2
ENSG00000139350 NEDD1 -529612 sc-eQTL 1.10e-01 0.168 0.105 0.641 pDC L2
ENSG00000257715 AC007298.1 352288 sc-eQTL 7.16e-01 0.0329 0.0904 0.641 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -22869 sc-eQTL 8.09e-01 0.0149 0.0617 0.645 B_Memory LOneK1K
ENSG00000111142 METAP2 904091 sc-eQTL 5.88e-01 0.0465 0.0857 0.645 B_Memory LOneK1K
ENSG00000111144 LTA4H 334091 sc-eQTL 5.89e-01 0.0346 0.064 0.645 B_Memory LOneK1K
ENSG00000111145 ELK3 183236 sc-eQTL 2.42e-01 -0.0856 0.073 0.645 B_Memory LOneK1K
ENSG00000136014 USP44 826135 sc-eQTL 8.60e-01 0.0161 0.0912 0.645 B_Memory LOneK1K
ENSG00000139343 SNRPF 518683 sc-eQTL 4.02e-01 0.0595 0.0708 0.645 B_Memory LOneK1K
ENSG00000139350 NEDD1 -529612 sc-eQTL 1.60e-01 -0.131 0.0926 0.645 B_Memory LOneK1K
ENSG00000059758 CDK17 -22869 sc-eQTL 1.84e-01 -0.0713 0.0535 0.645 B_Naive LOneK1K
ENSG00000111142 METAP2 904091 sc-eQTL 8.92e-01 0.00989 0.0727 0.645 B_Naive LOneK1K
ENSG00000111144 LTA4H 334091 sc-eQTL 8.52e-01 0.0113 0.0603 0.645 B_Naive LOneK1K
ENSG00000111145 ELK3 183236 sc-eQTL 1.82e-01 -0.0916 0.0683 0.645 B_Naive LOneK1K
ENSG00000136014 USP44 826135 sc-eQTL 7.13e-01 0.0309 0.0839 0.645 B_Naive LOneK1K
ENSG00000139343 SNRPF 518683 sc-eQTL 4.42e-01 0.0532 0.069 0.645 B_Naive LOneK1K
ENSG00000139350 NEDD1 -529612 sc-eQTL 1.86e-01 0.121 0.0911 0.645 B_Naive LOneK1K
ENSG00000059758 CDK17 -22869 sc-eQTL 2.12e-03 -0.197 0.0633 0.645 CD14_Mono LOneK1K
ENSG00000084110 HAL 381246 sc-eQTL 3.71e-01 0.0702 0.0783 0.645 CD14_Mono LOneK1K
ENSG00000111142 METAP2 904091 sc-eQTL 6.13e-02 0.138 0.0733 0.645 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 334091 sc-eQTL 8.24e-01 0.0192 0.0861 0.645 CD14_Mono LOneK1K
ENSG00000111145 ELK3 183236 sc-eQTL 9.36e-01 0.00496 0.0622 0.645 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 518683 sc-eQTL 2.52e-01 -0.0688 0.0598 0.645 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -529612 sc-eQTL 2.01e-01 -0.12 0.0938 0.645 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 352288 sc-eQTL 2.13e-01 0.109 0.0869 0.645 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -22869 sc-eQTL 9.33e-01 -0.00546 0.0652 0.647 CD16_Mono LOneK1K
ENSG00000084110 HAL 381246 sc-eQTL 8.30e-01 0.0165 0.0771 0.647 CD16_Mono LOneK1K
ENSG00000111142 METAP2 904091 sc-eQTL 5.54e-01 0.0518 0.0874 0.647 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 334091 sc-eQTL 8.59e-01 0.0152 0.0855 0.647 CD16_Mono LOneK1K
ENSG00000111145 ELK3 183236 sc-eQTL 1.54e-01 -0.0901 0.063 0.647 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 518683 sc-eQTL 6.77e-02 -0.119 0.0647 0.647 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -529612 sc-eQTL 2.24e-01 -0.102 0.0834 0.647 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 352288 sc-eQTL 8.73e-01 -0.0142 0.0886 0.647 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -22869 sc-eQTL 6.98e-02 0.0828 0.0454 0.647 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 904091 sc-eQTL 9.02e-01 0.00862 0.0697 0.647 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 334091 sc-eQTL 7.47e-01 0.0257 0.0796 0.647 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 183236 sc-eQTL 9.56e-01 0.00398 0.0729 0.647 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 518683 sc-eQTL 1.42e-01 -0.0915 0.062 0.647 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -529612 sc-eQTL 2.72e-02 -0.171 0.0768 0.647 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 183236 eQTL 4.88e-06 -0.0807 0.0175 0.0 0.0 0.352

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 ELK3 183236 4.35e-06 3.85e-06 4.65e-07 2.27e-06 6.13e-07 1.03e-06 2.93e-06 6.48e-07 2.44e-06 1.46e-06 3.7e-06 2.05e-06 5.46e-06 1.2e-06 1.25e-06 2e-06 1.52e-06 2.07e-06 1.38e-06 1.33e-06 1.39e-06 3.49e-06 3.36e-06 1.64e-06 4.95e-06 1.09e-06 1.57e-06 1.68e-06 4.15e-06 3.08e-06 1.98e-06 3.82e-07 5.87e-07 1.59e-06 1.91e-06 9.73e-07 9.22e-07 4.58e-07 1.33e-06 3.46e-07 1.67e-07 4.65e-06 6.19e-07 2.07e-07 3.49e-07 3.54e-07 6.8e-07 2.32e-07 2.02e-07
ENSG00000188596 \N -111964 5.87e-06 5.82e-06 6.9e-07 3.85e-06 1.62e-06 1.68e-06 8.3e-06 9.6e-07 5.05e-06 2.76e-06 7.56e-06 2.94e-06 9.02e-06 1.89e-06 9.41e-07 3.99e-06 2.07e-06 4.03e-06 1.55e-06 1.14e-06 2.89e-06 5.45e-06 4.68e-06 1.93e-06 9.55e-06 2.01e-06 2.32e-06 1.84e-06 6.43e-06 5.83e-06 2.74e-06 4.18e-07 5.21e-07 2.22e-06 1.99e-06 1.17e-06 1.06e-06 4.58e-07 9e-07 5.64e-07 4.32e-07 8.12e-06 4.37e-07 1.6e-07 3.74e-07 1.1e-06 1.05e-06 6.9e-07 3.74e-07
ENSG00000257878 \N 381090 1.31e-06 9.28e-07 2.93e-07 1.02e-06 1.96e-07 4.79e-07 1.61e-06 2.88e-07 1.16e-06 4.28e-07 1.56e-06 6.03e-07 1.99e-06 2.8e-07 5.35e-07 8.11e-07 8.43e-07 6.25e-07 4.65e-07 4.36e-07 3.95e-07 1.27e-06 8.53e-07 5.79e-07 2.24e-06 2.99e-07 6.91e-07 7.2e-07 1.32e-06 1.19e-06 5.91e-07 4.87e-08 1.34e-07 6.19e-07 4.34e-07 3.47e-07 3.81e-07 1.36e-07 1.94e-07 8.76e-08 1.98e-07 1.63e-06 6.87e-08 5.68e-09 1.87e-07 1.3e-07 2.26e-07 8.88e-08 5.39e-08