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Genes within 1Mb (chr12:96369471:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -31009 sc-eQTL 7.03e-01 -0.0175 0.0458 0.6 B L1
ENSG00000111142 METAP2 895951 sc-eQTL 4.36e-01 0.0506 0.0648 0.6 B L1
ENSG00000111144 LTA4H 325951 sc-eQTL 7.00e-01 0.022 0.0569 0.6 B L1
ENSG00000111145 ELK3 175096 sc-eQTL 2.74e-01 -0.0663 0.0604 0.6 B L1
ENSG00000136014 USP44 817995 sc-eQTL 5.26e-01 -0.0474 0.0747 0.6 B L1
ENSG00000139343 SNRPF 510543 sc-eQTL 7.09e-01 0.0206 0.055 0.6 B L1
ENSG00000139350 NEDD1 -537752 sc-eQTL 8.80e-01 0.0121 0.0804 0.6 B L1
ENSG00000059758 CDK17 -31009 sc-eQTL 9.82e-01 0.000874 0.0378 0.6 CD4T L1
ENSG00000111142 METAP2 895951 sc-eQTL 4.61e-01 0.0388 0.0526 0.6 CD4T L1
ENSG00000111144 LTA4H 325951 sc-eQTL 1.53e-02 -0.125 0.0511 0.6 CD4T L1
ENSG00000111145 ELK3 175096 sc-eQTL 3.00e-01 -0.0582 0.056 0.6 CD4T L1
ENSG00000136014 USP44 817995 sc-eQTL 9.71e-01 0.00294 0.0801 0.6 CD4T L1
ENSG00000139343 SNRPF 510543 sc-eQTL 9.38e-01 -0.0038 0.0491 0.6 CD4T L1
ENSG00000139350 NEDD1 -537752 sc-eQTL 9.56e-01 -0.00333 0.0605 0.6 CD4T L1
ENSG00000059758 CDK17 -31009 sc-eQTL 3.74e-01 0.0342 0.0385 0.6 CD8T L1
ENSG00000111142 METAP2 895951 sc-eQTL 2.80e-01 0.0672 0.062 0.6 CD8T L1
ENSG00000111144 LTA4H 325951 sc-eQTL 5.57e-01 -0.0243 0.0413 0.6 CD8T L1
ENSG00000111145 ELK3 175096 sc-eQTL 6.85e-01 0.0253 0.0622 0.6 CD8T L1
ENSG00000136014 USP44 817995 sc-eQTL 7.52e-01 -0.0224 0.0708 0.6 CD8T L1
ENSG00000139343 SNRPF 510543 sc-eQTL 7.98e-02 0.0892 0.0506 0.6 CD8T L1
ENSG00000139350 NEDD1 -537752 sc-eQTL 4.19e-02 -0.137 0.0672 0.6 CD8T L1
ENSG00000059758 CDK17 -31009 sc-eQTL 4.71e-01 0.0514 0.0711 0.592 DC L1
ENSG00000084110 HAL 373106 sc-eQTL 2.84e-01 0.0869 0.0808 0.592 DC L1
ENSG00000111142 METAP2 895951 sc-eQTL 6.29e-01 0.0433 0.0893 0.592 DC L1
ENSG00000111144 LTA4H 325951 sc-eQTL 6.67e-01 -0.0285 0.0663 0.592 DC L1
ENSG00000111145 ELK3 175096 sc-eQTL 5.47e-01 0.0489 0.0811 0.592 DC L1
ENSG00000139343 SNRPF 510543 sc-eQTL 4.87e-01 0.047 0.0675 0.592 DC L1
ENSG00000139350 NEDD1 -537752 sc-eQTL 8.70e-01 -0.0142 0.0867 0.592 DC L1
ENSG00000257715 AC007298.1 344148 sc-eQTL 2.25e-01 -0.0948 0.078 0.592 DC L1
ENSG00000059758 CDK17 -31009 sc-eQTL 2.41e-02 -0.132 0.0582 0.6 Mono L1
ENSG00000084110 HAL 373106 sc-eQTL 6.17e-02 0.138 0.0736 0.6 Mono L1
ENSG00000111142 METAP2 895951 sc-eQTL 2.54e-01 0.073 0.0639 0.6 Mono L1
ENSG00000111144 LTA4H 325951 sc-eQTL 8.49e-01 0.016 0.0837 0.6 Mono L1
ENSG00000111145 ELK3 175096 sc-eQTL 8.15e-01 -0.0132 0.0562 0.6 Mono L1
ENSG00000139343 SNRPF 510543 sc-eQTL 2.32e-01 -0.0633 0.0529 0.6 Mono L1
ENSG00000139350 NEDD1 -537752 sc-eQTL 3.44e-01 -0.0771 0.0813 0.6 Mono L1
ENSG00000257715 AC007298.1 344148 sc-eQTL 6.18e-01 0.0394 0.0789 0.6 Mono L1
ENSG00000059758 CDK17 -31009 sc-eQTL 1.20e-02 0.106 0.0419 0.601 NK L1
ENSG00000111142 METAP2 895951 sc-eQTL 6.50e-01 0.0286 0.0629 0.601 NK L1
ENSG00000111144 LTA4H 325951 sc-eQTL 2.93e-01 -0.0759 0.072 0.601 NK L1
ENSG00000111145 ELK3 175096 sc-eQTL 1.37e-01 0.102 0.0681 0.601 NK L1
ENSG00000139343 SNRPF 510543 sc-eQTL 4.63e-01 0.0417 0.0567 0.601 NK L1
ENSG00000139350 NEDD1 -537752 sc-eQTL 1.47e-01 -0.104 0.0716 0.601 NK L1
ENSG00000059758 CDK17 -31009 sc-eQTL 1.93e-01 -0.0464 0.0356 0.6 Other_T L1
ENSG00000074527 NTN4 578319 sc-eQTL 8.36e-01 0.0137 0.066 0.6 Other_T L1
ENSG00000111142 METAP2 895951 sc-eQTL 1.72e-01 0.093 0.0679 0.6 Other_T L1
ENSG00000111144 LTA4H 325951 sc-eQTL 7.38e-01 -0.025 0.0746 0.6 Other_T L1
ENSG00000111145 ELK3 175096 sc-eQTL 7.42e-01 0.0192 0.0582 0.6 Other_T L1
ENSG00000139343 SNRPF 510543 sc-eQTL 2.90e-01 0.0573 0.054 0.6 Other_T L1
ENSG00000139350 NEDD1 -537752 sc-eQTL 1.18e-01 -0.129 0.0819 0.6 Other_T L1
ENSG00000188596 CFAP54 -120100 sc-eQTL 8.54e-01 -0.0157 0.0853 0.6 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -31009 sc-eQTL 9.29e-01 0.00711 0.0801 0.592 B_Activated L2
ENSG00000111142 METAP2 895951 sc-eQTL 2.08e-01 0.127 0.1 0.592 B_Activated L2
ENSG00000111144 LTA4H 325951 sc-eQTL 3.62e-01 0.0827 0.0905 0.592 B_Activated L2
ENSG00000111145 ELK3 175096 sc-eQTL 1.82e-01 0.128 0.0956 0.592 B_Activated L2
ENSG00000136014 USP44 817995 sc-eQTL 7.68e-01 -0.0218 0.0738 0.592 B_Activated L2
ENSG00000139343 SNRPF 510543 sc-eQTL 5.89e-01 -0.049 0.0905 0.592 B_Activated L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 5.10e-01 -0.0624 0.0947 0.592 B_Activated L2
ENSG00000059758 CDK17 -31009 sc-eQTL 4.14e-01 -0.0573 0.0701 0.599 B_Intermediate L2
ENSG00000111142 METAP2 895951 sc-eQTL 7.79e-01 0.0226 0.0805 0.599 B_Intermediate L2
ENSG00000111144 LTA4H 325951 sc-eQTL 8.77e-01 0.0105 0.068 0.599 B_Intermediate L2
ENSG00000111145 ELK3 175096 sc-eQTL 1.19e-01 -0.119 0.0762 0.599 B_Intermediate L2
ENSG00000136014 USP44 817995 sc-eQTL 1.46e-01 -0.131 0.0899 0.599 B_Intermediate L2
ENSG00000139343 SNRPF 510543 sc-eQTL 9.03e-01 0.00934 0.0763 0.599 B_Intermediate L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 8.78e-01 -0.0138 0.0894 0.599 B_Intermediate L2
ENSG00000059758 CDK17 -31009 sc-eQTL 9.20e-01 0.00681 0.0679 0.597 B_Memory L2
ENSG00000111142 METAP2 895951 sc-eQTL 2.08e-01 0.111 0.0879 0.597 B_Memory L2
ENSG00000111144 LTA4H 325951 sc-eQTL 8.77e-01 0.0121 0.0783 0.597 B_Memory L2
ENSG00000111145 ELK3 175096 sc-eQTL 8.45e-01 0.015 0.077 0.597 B_Memory L2
ENSG00000136014 USP44 817995 sc-eQTL 6.79e-01 -0.035 0.0845 0.597 B_Memory L2
ENSG00000139343 SNRPF 510543 sc-eQTL 6.51e-02 0.15 0.0809 0.597 B_Memory L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 1.84e-01 -0.12 0.0899 0.597 B_Memory L2
ENSG00000059758 CDK17 -31009 sc-eQTL 2.26e-01 -0.069 0.0568 0.6 B_Naive1 L2
ENSG00000111142 METAP2 895951 sc-eQTL 6.45e-01 0.034 0.0737 0.6 B_Naive1 L2
ENSG00000111144 LTA4H 325951 sc-eQTL 8.77e-01 -0.00922 0.0597 0.6 B_Naive1 L2
ENSG00000111145 ELK3 175096 sc-eQTL 9.47e-01 -0.00471 0.0706 0.6 B_Naive1 L2
ENSG00000136014 USP44 817995 sc-eQTL 9.53e-01 -0.00523 0.0887 0.6 B_Naive1 L2
ENSG00000139343 SNRPF 510543 sc-eQTL 6.13e-01 0.0348 0.0686 0.6 B_Naive1 L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 8.24e-01 -0.0196 0.088 0.6 B_Naive1 L2
ENSG00000059758 CDK17 -31009 sc-eQTL 9.28e-01 -0.00643 0.0711 0.599 B_Naive2 L2
ENSG00000111142 METAP2 895951 sc-eQTL 5.15e-01 0.0559 0.0857 0.599 B_Naive2 L2
ENSG00000111144 LTA4H 325951 sc-eQTL 9.77e-01 -0.0019 0.0673 0.599 B_Naive2 L2
ENSG00000111145 ELK3 175096 sc-eQTL 8.54e-01 -0.0147 0.0794 0.599 B_Naive2 L2
ENSG00000136014 USP44 817995 sc-eQTL 2.45e-01 -0.0997 0.0855 0.599 B_Naive2 L2
ENSG00000139343 SNRPF 510543 sc-eQTL 1.09e-01 0.126 0.0783 0.599 B_Naive2 L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 8.25e-01 0.0207 0.0937 0.599 B_Naive2 L2
ENSG00000059758 CDK17 -31009 sc-eQTL 5.72e-01 -0.037 0.0655 0.595 CD4_CTL L2
ENSG00000111142 METAP2 895951 sc-eQTL 6.17e-01 0.0469 0.0937 0.595 CD4_CTL L2
ENSG00000111144 LTA4H 325951 sc-eQTL 3.98e-02 -0.189 0.0914 0.595 CD4_CTL L2
ENSG00000111145 ELK3 175096 sc-eQTL 3.29e-01 0.0913 0.0933 0.595 CD4_CTL L2
ENSG00000136014 USP44 817995 sc-eQTL 4.47e-01 0.0568 0.0746 0.595 CD4_CTL L2
ENSG00000139343 SNRPF 510543 sc-eQTL 9.26e-01 0.00757 0.0813 0.595 CD4_CTL L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 1.84e-01 -0.125 0.0936 0.595 CD4_CTL L2
ENSG00000059758 CDK17 -31009 sc-eQTL 4.99e-01 0.0282 0.0417 0.6 CD4_Naive L2
ENSG00000111142 METAP2 895951 sc-eQTL 3.08e-01 0.0613 0.06 0.6 CD4_Naive L2
ENSG00000111144 LTA4H 325951 sc-eQTL 2.33e-03 -0.182 0.059 0.6 CD4_Naive L2
ENSG00000111145 ELK3 175096 sc-eQTL 6.32e-01 -0.0289 0.0603 0.6 CD4_Naive L2
ENSG00000136014 USP44 817995 sc-eQTL 9.77e-01 0.00244 0.0845 0.6 CD4_Naive L2
ENSG00000139343 SNRPF 510543 sc-eQTL 8.32e-01 0.0114 0.0536 0.6 CD4_Naive L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 3.79e-01 -0.0581 0.0659 0.6 CD4_Naive L2
ENSG00000059758 CDK17 -31009 sc-eQTL 6.62e-01 -0.0176 0.0403 0.6 CD4_TCM L2
ENSG00000111142 METAP2 895951 sc-eQTL 8.11e-01 -0.0164 0.0686 0.6 CD4_TCM L2
ENSG00000111144 LTA4H 325951 sc-eQTL 1.00e+00 3.72e-05 0.0683 0.6 CD4_TCM L2
ENSG00000111145 ELK3 175096 sc-eQTL 1.48e-01 -0.0972 0.0669 0.6 CD4_TCM L2
ENSG00000136014 USP44 817995 sc-eQTL 6.80e-01 0.0383 0.0929 0.6 CD4_TCM L2
ENSG00000139343 SNRPF 510543 sc-eQTL 9.49e-01 -0.00355 0.0551 0.6 CD4_TCM L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 5.71e-01 0.0428 0.0753 0.6 CD4_TCM L2
ENSG00000059758 CDK17 -31009 sc-eQTL 6.18e-01 0.0245 0.0491 0.6 CD4_TEM L2
ENSG00000111142 METAP2 895951 sc-eQTL 4.30e-01 0.0648 0.082 0.6 CD4_TEM L2
ENSG00000111144 LTA4H 325951 sc-eQTL 7.80e-01 -0.0212 0.0758 0.6 CD4_TEM L2
ENSG00000111145 ELK3 175096 sc-eQTL 7.04e-01 -0.0268 0.0705 0.6 CD4_TEM L2
ENSG00000136014 USP44 817995 sc-eQTL 8.61e-01 -0.0152 0.0867 0.6 CD4_TEM L2
ENSG00000139343 SNRPF 510543 sc-eQTL 1.66e-01 -0.102 0.0735 0.6 CD4_TEM L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 4.69e-01 0.0634 0.0874 0.6 CD4_TEM L2
ENSG00000059758 CDK17 -31009 sc-eQTL 2.07e-01 0.0609 0.0481 0.6 CD8_CTL L2
ENSG00000111142 METAP2 895951 sc-eQTL 8.43e-01 0.0165 0.0835 0.6 CD8_CTL L2
ENSG00000111144 LTA4H 325951 sc-eQTL 7.75e-01 -0.025 0.0872 0.6 CD8_CTL L2
ENSG00000111145 ELK3 175096 sc-eQTL 1.52e-01 0.114 0.079 0.6 CD8_CTL L2
ENSG00000136014 USP44 817995 sc-eQTL 8.73e-01 0.0142 0.0885 0.6 CD8_CTL L2
ENSG00000139343 SNRPF 510543 sc-eQTL 9.21e-01 0.00726 0.073 0.6 CD8_CTL L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 8.91e-01 -0.0112 0.0818 0.6 CD8_CTL L2
ENSG00000059758 CDK17 -31009 sc-eQTL 6.51e-01 -0.026 0.0574 0.6 CD8_Naive L2
ENSG00000111142 METAP2 895951 sc-eQTL 7.12e-02 0.137 0.0757 0.6 CD8_Naive L2
ENSG00000111144 LTA4H 325951 sc-eQTL 6.00e-01 0.0361 0.0687 0.6 CD8_Naive L2
ENSG00000111145 ELK3 175096 sc-eQTL 3.09e-01 0.074 0.0726 0.6 CD8_Naive L2
ENSG00000136014 USP44 817995 sc-eQTL 2.72e-01 -0.0839 0.0762 0.6 CD8_Naive L2
ENSG00000139343 SNRPF 510543 sc-eQTL 4.30e-01 0.0516 0.0653 0.6 CD8_Naive L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 5.01e-02 -0.152 0.0772 0.6 CD8_Naive L2
ENSG00000059758 CDK17 -31009 sc-eQTL 4.52e-01 0.0478 0.0635 0.593 CD8_TCM L2
ENSG00000111142 METAP2 895951 sc-eQTL 8.50e-01 0.018 0.0949 0.593 CD8_TCM L2
ENSG00000111144 LTA4H 325951 sc-eQTL 6.31e-01 -0.045 0.0934 0.593 CD8_TCM L2
ENSG00000111145 ELK3 175096 sc-eQTL 6.31e-01 -0.0381 0.0791 0.593 CD8_TCM L2
ENSG00000136014 USP44 817995 sc-eQTL 9.37e-01 -0.00678 0.0857 0.593 CD8_TCM L2
ENSG00000139343 SNRPF 510543 sc-eQTL 3.95e-01 0.0776 0.091 0.593 CD8_TCM L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 4.33e-01 -0.07 0.0891 0.593 CD8_TCM L2
ENSG00000059758 CDK17 -31009 sc-eQTL 1.93e-01 0.0997 0.0763 0.607 CD8_TEM L2
ENSG00000111142 METAP2 895951 sc-eQTL 9.22e-01 0.00884 0.09 0.607 CD8_TEM L2
ENSG00000111144 LTA4H 325951 sc-eQTL 7.19e-01 -0.0338 0.0938 0.607 CD8_TEM L2
ENSG00000111145 ELK3 175096 sc-eQTL 2.08e-01 -0.116 0.0919 0.607 CD8_TEM L2
ENSG00000136014 USP44 817995 sc-eQTL 2.92e-01 0.0827 0.0783 0.607 CD8_TEM L2
ENSG00000139343 SNRPF 510543 sc-eQTL 6.87e-01 -0.0346 0.0857 0.607 CD8_TEM L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 2.13e-02 -0.213 0.0919 0.607 CD8_TEM L2
ENSG00000059758 CDK17 -31009 sc-eQTL 2.29e-02 -0.118 0.0514 0.602 MAIT L2
ENSG00000074527 NTN4 578319 sc-eQTL 6.06e-01 0.0363 0.0701 0.602 MAIT L2
ENSG00000111142 METAP2 895951 sc-eQTL 7.24e-02 0.158 0.0877 0.602 MAIT L2
ENSG00000111144 LTA4H 325951 sc-eQTL 7.76e-01 0.0229 0.0804 0.602 MAIT L2
ENSG00000111145 ELK3 175096 sc-eQTL 7.09e-01 0.0253 0.0675 0.602 MAIT L2
ENSG00000139343 SNRPF 510543 sc-eQTL 8.48e-01 0.015 0.0782 0.602 MAIT L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 1.95e-02 -0.204 0.0867 0.602 MAIT L2
ENSG00000188596 CFAP54 -120100 sc-eQTL 9.83e-01 0.00182 0.0871 0.602 MAIT L2
ENSG00000059758 CDK17 -31009 sc-eQTL 4.48e-01 0.0411 0.0541 0.602 NK_CD56bright L2
ENSG00000111142 METAP2 895951 sc-eQTL 8.44e-01 0.018 0.0914 0.602 NK_CD56bright L2
ENSG00000111144 LTA4H 325951 sc-eQTL 2.30e-01 -0.0962 0.0799 0.602 NK_CD56bright L2
ENSG00000111145 ELK3 175096 sc-eQTL 3.23e-01 0.0841 0.0848 0.602 NK_CD56bright L2
ENSG00000139343 SNRPF 510543 sc-eQTL 6.88e-01 0.0358 0.0889 0.602 NK_CD56bright L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 7.97e-01 0.0231 0.0898 0.602 NK_CD56bright L2
ENSG00000059758 CDK17 -31009 sc-eQTL 7.85e-03 0.123 0.0458 0.601 NK_CD56dim L2
ENSG00000111142 METAP2 895951 sc-eQTL 5.75e-01 0.0458 0.0816 0.601 NK_CD56dim L2
ENSG00000111144 LTA4H 325951 sc-eQTL 2.66e-01 -0.0936 0.0839 0.601 NK_CD56dim L2
ENSG00000111145 ELK3 175096 sc-eQTL 9.91e-01 -0.000832 0.0745 0.601 NK_CD56dim L2
ENSG00000139343 SNRPF 510543 sc-eQTL 6.21e-01 -0.0351 0.0708 0.601 NK_CD56dim L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 1.60e-01 -0.115 0.0813 0.601 NK_CD56dim L2
ENSG00000059758 CDK17 -31009 sc-eQTL 3.19e-01 -0.0727 0.0728 0.603 NK_HLA L2
ENSG00000111142 METAP2 895951 sc-eQTL 3.03e-01 0.0946 0.0917 0.603 NK_HLA L2
ENSG00000111144 LTA4H 325951 sc-eQTL 4.44e-01 -0.0732 0.0955 0.603 NK_HLA L2
ENSG00000111145 ELK3 175096 sc-eQTL 4.34e-01 0.0694 0.0886 0.603 NK_HLA L2
ENSG00000139343 SNRPF 510543 sc-eQTL 7.62e-01 0.028 0.0924 0.603 NK_HLA L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 6.36e-01 -0.0415 0.0874 0.603 NK_HLA L2
ENSG00000059758 CDK17 -31009 sc-eQTL 2.38e-01 0.0603 0.051 0.601 NK_cytokine L2
ENSG00000111142 METAP2 895951 sc-eQTL 1.84e-01 0.113 0.0846 0.601 NK_cytokine L2
ENSG00000111144 LTA4H 325951 sc-eQTL 8.51e-01 -0.0162 0.0864 0.601 NK_cytokine L2
ENSG00000111145 ELK3 175096 sc-eQTL 4.25e-01 0.066 0.0826 0.601 NK_cytokine L2
ENSG00000139343 SNRPF 510543 sc-eQTL 3.83e-01 0.0612 0.07 0.601 NK_cytokine L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 1.15e-01 -0.136 0.0862 0.601 NK_cytokine L2
ENSG00000059758 CDK17 -31009 sc-eQTL 1.82e-01 0.122 0.0911 0.611 PB L2
ENSG00000111142 METAP2 895951 sc-eQTL 3.84e-01 0.0934 0.107 0.611 PB L2
ENSG00000111144 LTA4H 325951 sc-eQTL 2.26e-01 -0.0979 0.0805 0.611 PB L2
ENSG00000111145 ELK3 175096 sc-eQTL 2.54e-01 0.118 0.103 0.611 PB L2
ENSG00000136014 USP44 817995 sc-eQTL 1.06e-01 -0.155 0.095 0.611 PB L2
ENSG00000139343 SNRPF 510543 sc-eQTL 5.31e-01 -0.0636 0.101 0.611 PB L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 8.32e-01 0.0256 0.12 0.611 PB L2
ENSG00000059758 CDK17 -31009 sc-eQTL 9.26e-01 -0.00528 0.0566 0.598 Pro_T L2
ENSG00000074527 NTN4 578319 sc-eQTL 1.24e-01 0.0977 0.0632 0.598 Pro_T L2
ENSG00000111142 METAP2 895951 sc-eQTL 6.59e-01 0.0332 0.075 0.598 Pro_T L2
ENSG00000111144 LTA4H 325951 sc-eQTL 1.78e-01 -0.101 0.0744 0.598 Pro_T L2
ENSG00000111145 ELK3 175096 sc-eQTL 6.88e-01 -0.0364 0.0904 0.598 Pro_T L2
ENSG00000139343 SNRPF 510543 sc-eQTL 5.77e-01 0.0319 0.057 0.598 Pro_T L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 6.69e-01 0.0355 0.0828 0.598 Pro_T L2
ENSG00000188596 CFAP54 -120100 sc-eQTL 4.88e-01 -0.0465 0.0669 0.598 Pro_T L2
ENSG00000059758 CDK17 -31009 sc-eQTL 3.19e-01 -0.062 0.0621 0.6 Treg L2
ENSG00000111142 METAP2 895951 sc-eQTL 3.54e-01 0.0785 0.0845 0.6 Treg L2
ENSG00000111144 LTA4H 325951 sc-eQTL 7.54e-01 -0.0248 0.0788 0.6 Treg L2
ENSG00000111145 ELK3 175096 sc-eQTL 8.60e-01 -0.0126 0.0714 0.6 Treg L2
ENSG00000136014 USP44 817995 sc-eQTL 4.57e-01 0.0597 0.0801 0.6 Treg L2
ENSG00000139343 SNRPF 510543 sc-eQTL 7.98e-03 0.218 0.0813 0.6 Treg L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 6.29e-01 -0.0447 0.0923 0.6 Treg L2
ENSG00000059758 CDK17 -31009 sc-eQTL 1.98e-01 0.0983 0.0762 0.58 cDC L2
ENSG00000084110 HAL 373106 sc-eQTL 9.58e-01 0.00417 0.0796 0.58 cDC L2
ENSG00000111142 METAP2 895951 sc-eQTL 6.97e-01 0.0374 0.096 0.58 cDC L2
ENSG00000111144 LTA4H 325951 sc-eQTL 2.37e-01 0.0806 0.0679 0.58 cDC L2
ENSG00000111145 ELK3 175096 sc-eQTL 4.27e-01 0.0715 0.0898 0.58 cDC L2
ENSG00000139343 SNRPF 510543 sc-eQTL 5.39e-01 -0.0463 0.0753 0.58 cDC L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 1.49e-01 -0.132 0.0913 0.58 cDC L2
ENSG00000257715 AC007298.1 344148 sc-eQTL 7.21e-01 -0.0277 0.0774 0.58 cDC L2
ENSG00000059758 CDK17 -31009 sc-eQTL 5.95e-03 -0.182 0.0657 0.6 cMono_IL1B L2
ENSG00000084110 HAL 373106 sc-eQTL 2.43e-01 0.085 0.0727 0.6 cMono_IL1B L2
ENSG00000111142 METAP2 895951 sc-eQTL 2.90e-01 0.0799 0.0754 0.6 cMono_IL1B L2
ENSG00000111144 LTA4H 325951 sc-eQTL 9.86e-01 -0.00139 0.0788 0.6 cMono_IL1B L2
ENSG00000111145 ELK3 175096 sc-eQTL 6.78e-01 -0.0253 0.0607 0.6 cMono_IL1B L2
ENSG00000139343 SNRPF 510543 sc-eQTL 6.48e-01 0.0286 0.0626 0.6 cMono_IL1B L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 6.04e-01 -0.0448 0.0862 0.6 cMono_IL1B L2
ENSG00000257715 AC007298.1 344148 sc-eQTL 1.45e-01 0.117 0.08 0.6 cMono_IL1B L2
ENSG00000059758 CDK17 -31009 sc-eQTL 1.69e-02 -0.181 0.0754 0.6 cMono_S100A L2
ENSG00000084110 HAL 373106 sc-eQTL 9.58e-02 0.142 0.0852 0.6 cMono_S100A L2
ENSG00000111142 METAP2 895951 sc-eQTL 6.01e-02 0.163 0.086 0.6 cMono_S100A L2
ENSG00000111144 LTA4H 325951 sc-eQTL 9.44e-01 -0.00599 0.0856 0.6 cMono_S100A L2
ENSG00000111145 ELK3 175096 sc-eQTL 5.59e-01 0.0408 0.0697 0.6 cMono_S100A L2
ENSG00000139343 SNRPF 510543 sc-eQTL 2.06e-01 -0.0872 0.0687 0.6 cMono_S100A L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 3.02e-01 -0.096 0.0928 0.6 cMono_S100A L2
ENSG00000257715 AC007298.1 344148 sc-eQTL 9.31e-01 -0.00758 0.0876 0.6 cMono_S100A L2
ENSG00000059758 CDK17 -31009 sc-eQTL 3.96e-01 0.0621 0.0728 0.6 gdT L2
ENSG00000074527 NTN4 578319 sc-eQTL 7.40e-01 0.0279 0.0838 0.6 gdT L2
ENSG00000111142 METAP2 895951 sc-eQTL 6.81e-01 0.0432 0.105 0.6 gdT L2
ENSG00000111144 LTA4H 325951 sc-eQTL 3.24e-01 0.108 0.109 0.6 gdT L2
ENSG00000111145 ELK3 175096 sc-eQTL 1.30e-01 0.153 0.1 0.6 gdT L2
ENSG00000139343 SNRPF 510543 sc-eQTL 2.00e-02 0.225 0.0957 0.6 gdT L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 9.59e-01 0.0055 0.108 0.6 gdT L2
ENSG00000188596 CFAP54 -120100 sc-eQTL 2.06e-01 0.119 0.0939 0.6 gdT L2
ENSG00000059758 CDK17 -31009 sc-eQTL 7.69e-01 0.025 0.085 0.593 intMono L2
ENSG00000084110 HAL 373106 sc-eQTL 3.84e-01 0.0748 0.0858 0.593 intMono L2
ENSG00000111142 METAP2 895951 sc-eQTL 6.93e-01 0.0385 0.0973 0.593 intMono L2
ENSG00000111144 LTA4H 325951 sc-eQTL 3.00e-01 0.0913 0.0879 0.593 intMono L2
ENSG00000111145 ELK3 175096 sc-eQTL 4.04e-01 -0.0655 0.0784 0.593 intMono L2
ENSG00000139343 SNRPF 510543 sc-eQTL 5.39e-02 -0.161 0.0832 0.593 intMono L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 9.88e-01 0.00134 0.0872 0.593 intMono L2
ENSG00000257715 AC007298.1 344148 sc-eQTL 1.57e-01 0.124 0.0873 0.593 intMono L2
ENSG00000059758 CDK17 -31009 sc-eQTL 7.24e-01 0.0244 0.0689 0.595 ncMono L2
ENSG00000084110 HAL 373106 sc-eQTL 5.94e-01 -0.0411 0.0769 0.595 ncMono L2
ENSG00000111142 METAP2 895951 sc-eQTL 9.21e-01 0.00922 0.0931 0.595 ncMono L2
ENSG00000111144 LTA4H 325951 sc-eQTL 4.36e-01 0.0668 0.0857 0.595 ncMono L2
ENSG00000111145 ELK3 175096 sc-eQTL 6.80e-01 -0.0304 0.0736 0.595 ncMono L2
ENSG00000139343 SNRPF 510543 sc-eQTL 3.78e-02 -0.156 0.0744 0.595 ncMono L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 9.06e-01 -0.00946 0.0799 0.595 ncMono L2
ENSG00000257715 AC007298.1 344148 sc-eQTL 7.85e-01 -0.0249 0.0912 0.595 ncMono L2
ENSG00000059758 CDK17 -31009 sc-eQTL 7.47e-01 0.0287 0.0887 0.585 pDC L2
ENSG00000084110 HAL 373106 sc-eQTL 1.50e-02 0.181 0.0735 0.585 pDC L2
ENSG00000111142 METAP2 895951 sc-eQTL 8.48e-01 0.0194 0.101 0.585 pDC L2
ENSG00000111144 LTA4H 325951 sc-eQTL 2.89e-01 -0.0888 0.0835 0.585 pDC L2
ENSG00000111145 ELK3 175096 sc-eQTL 9.90e-01 0.00124 0.103 0.585 pDC L2
ENSG00000139343 SNRPF 510543 sc-eQTL 4.09e-01 0.074 0.0893 0.585 pDC L2
ENSG00000139350 NEDD1 -537752 sc-eQTL 1.85e-01 0.131 0.0982 0.585 pDC L2
ENSG00000257715 AC007298.1 344148 sc-eQTL 6.90e-01 0.0338 0.0846 0.585 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -31009 sc-eQTL 7.34e-01 -0.0201 0.059 0.6 B_Memory LOneK1K
ENSG00000111142 METAP2 895951 sc-eQTL 1.59e-01 0.115 0.0817 0.6 B_Memory LOneK1K
ENSG00000111144 LTA4H 325951 sc-eQTL 4.93e-01 0.0421 0.0612 0.6 B_Memory LOneK1K
ENSG00000111145 ELK3 175096 sc-eQTL 3.03e-01 -0.0721 0.0698 0.6 B_Memory LOneK1K
ENSG00000136014 USP44 817995 sc-eQTL 3.46e-01 -0.0823 0.0871 0.6 B_Memory LOneK1K
ENSG00000139343 SNRPF 510543 sc-eQTL 1.80e-01 0.0909 0.0676 0.6 B_Memory LOneK1K
ENSG00000139350 NEDD1 -537752 sc-eQTL 3.53e-01 -0.0827 0.0888 0.6 B_Memory LOneK1K
ENSG00000059758 CDK17 -31009 sc-eQTL 1.52e-01 -0.0733 0.051 0.6 B_Naive LOneK1K
ENSG00000111142 METAP2 895951 sc-eQTL 6.10e-01 0.0354 0.0693 0.6 B_Naive LOneK1K
ENSG00000111144 LTA4H 325951 sc-eQTL 6.08e-01 0.0295 0.0575 0.6 B_Naive LOneK1K
ENSG00000111145 ELK3 175096 sc-eQTL 3.49e-01 -0.0613 0.0653 0.6 B_Naive LOneK1K
ENSG00000136014 USP44 817995 sc-eQTL 9.95e-01 0.000496 0.08 0.6 B_Naive LOneK1K
ENSG00000139343 SNRPF 510543 sc-eQTL 5.82e-01 0.0363 0.0659 0.6 B_Naive LOneK1K
ENSG00000139350 NEDD1 -537752 sc-eQTL 6.47e-01 0.0399 0.0872 0.6 B_Naive LOneK1K
ENSG00000059758 CDK17 -31009 sc-eQTL 2.43e-03 -0.184 0.0599 0.6 CD14_Mono LOneK1K
ENSG00000084110 HAL 373106 sc-eQTL 1.54e-01 0.105 0.0737 0.6 CD14_Mono LOneK1K
ENSG00000111142 METAP2 895951 sc-eQTL 8.42e-02 0.12 0.0693 0.6 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 325951 sc-eQTL 6.96e-01 0.0319 0.0813 0.6 CD14_Mono LOneK1K
ENSG00000111145 ELK3 175096 sc-eQTL 8.43e-01 -0.0116 0.0588 0.6 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 510543 sc-eQTL 5.50e-01 -0.0339 0.0567 0.6 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -537752 sc-eQTL 3.26e-01 -0.0873 0.0888 0.6 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 344148 sc-eQTL 3.77e-01 0.0728 0.0822 0.6 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -31009 sc-eQTL 8.72e-01 -0.00994 0.0618 0.601 CD16_Mono LOneK1K
ENSG00000084110 HAL 373106 sc-eQTL 9.11e-01 0.00819 0.0731 0.601 CD16_Mono LOneK1K
ENSG00000111142 METAP2 895951 sc-eQTL 5.65e-01 0.0478 0.0828 0.601 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 325951 sc-eQTL 6.50e-01 0.0368 0.081 0.601 CD16_Mono LOneK1K
ENSG00000111145 ELK3 175096 sc-eQTL 1.34e-01 -0.0898 0.0596 0.601 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 510543 sc-eQTL 1.22e-01 -0.0954 0.0615 0.601 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -537752 sc-eQTL 5.52e-01 -0.0472 0.0792 0.601 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 344148 sc-eQTL 9.72e-01 -0.00291 0.0839 0.601 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -31009 sc-eQTL 4.16e-02 0.0883 0.0431 0.601 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 895951 sc-eQTL 3.34e-01 0.0639 0.066 0.601 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 325951 sc-eQTL 4.05e-01 -0.063 0.0755 0.601 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 175096 sc-eQTL 4.02e-01 0.058 0.0691 0.601 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 510543 sc-eQTL 8.05e-01 0.0147 0.0592 0.601 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -537752 sc-eQTL 7.94e-02 -0.129 0.0733 0.601 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111142 METAP2 895951 pQTL 0.036 0.0259 0.0124 0.0 0.0 0.403
ENSG00000111145 ELK3 175096 eQTL 1.08e-05 -0.0731 0.0165 0.0 0.0 0.402
ENSG00000257715 AC007298.1 344148 eQTL 0.0463 -0.0369 0.0185 0.0 0.0 0.402

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina