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Genes within 1Mb (chr12:96361719:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -38761 sc-eQTL 5.64e-01 -0.0391 0.0678 0.859 B L1
ENSG00000111142 METAP2 888199 sc-eQTL 8.67e-01 0.0161 0.096 0.859 B L1
ENSG00000111144 LTA4H 318199 sc-eQTL 1.45e-01 0.123 0.0839 0.859 B L1
ENSG00000111145 ELK3 167344 sc-eQTL 1.36e-02 -0.22 0.0885 0.859 B L1
ENSG00000136014 USP44 810243 sc-eQTL 7.77e-01 0.0313 0.111 0.859 B L1
ENSG00000139343 SNRPF 502791 sc-eQTL 5.14e-01 0.0532 0.0815 0.859 B L1
ENSG00000139350 NEDD1 -545504 sc-eQTL 6.63e-01 0.052 0.119 0.859 B L1
ENSG00000059758 CDK17 -38761 sc-eQTL 7.03e-01 -0.0212 0.0554 0.859 CD4T L1
ENSG00000111142 METAP2 888199 sc-eQTL 5.84e-01 0.0423 0.0772 0.859 CD4T L1
ENSG00000111144 LTA4H 318199 sc-eQTL 5.30e-01 -0.0478 0.076 0.859 CD4T L1
ENSG00000111145 ELK3 167344 sc-eQTL 8.43e-01 -0.0163 0.0824 0.859 CD4T L1
ENSG00000136014 USP44 810243 sc-eQTL 2.09e-01 -0.148 0.117 0.859 CD4T L1
ENSG00000139343 SNRPF 502791 sc-eQTL 7.83e-01 -0.0199 0.072 0.859 CD4T L1
ENSG00000139350 NEDD1 -545504 sc-eQTL 3.99e-01 -0.0747 0.0885 0.859 CD4T L1
ENSG00000059758 CDK17 -38761 sc-eQTL 1.02e-01 -0.0941 0.0573 0.859 CD8T L1
ENSG00000111142 METAP2 888199 sc-eQTL 7.28e-01 0.0325 0.0931 0.859 CD8T L1
ENSG00000111144 LTA4H 318199 sc-eQTL 5.50e-01 -0.037 0.0619 0.859 CD8T L1
ENSG00000111145 ELK3 167344 sc-eQTL 1.36e-01 -0.139 0.0928 0.859 CD8T L1
ENSG00000136014 USP44 810243 sc-eQTL 3.75e-01 -0.0941 0.106 0.859 CD8T L1
ENSG00000139343 SNRPF 502791 sc-eQTL 4.10e-01 0.063 0.0763 0.859 CD8T L1
ENSG00000139350 NEDD1 -545504 sc-eQTL 9.11e-03 -0.263 0.0999 0.859 CD8T L1
ENSG00000059758 CDK17 -38761 sc-eQTL 4.98e-01 0.0712 0.105 0.858 DC L1
ENSG00000084110 HAL 365354 sc-eQTL 2.98e-01 0.124 0.119 0.858 DC L1
ENSG00000111142 METAP2 888199 sc-eQTL 9.10e-01 -0.0149 0.132 0.858 DC L1
ENSG00000111144 LTA4H 318199 sc-eQTL 5.15e-01 0.0637 0.0976 0.858 DC L1
ENSG00000111145 ELK3 167344 sc-eQTL 1.88e-01 0.157 0.119 0.858 DC L1
ENSG00000139343 SNRPF 502791 sc-eQTL 1.65e-01 0.138 0.099 0.858 DC L1
ENSG00000139350 NEDD1 -545504 sc-eQTL 6.28e-01 0.0619 0.128 0.858 DC L1
ENSG00000257715 AC007298.1 336396 sc-eQTL 6.34e-01 -0.0549 0.115 0.858 DC L1
ENSG00000059758 CDK17 -38761 sc-eQTL 1.34e-03 -0.269 0.0828 0.859 Mono L1
ENSG00000084110 HAL 365354 sc-eQTL 5.68e-02 0.203 0.106 0.859 Mono L1
ENSG00000111142 METAP2 888199 sc-eQTL 1.39e-01 0.137 0.0919 0.859 Mono L1
ENSG00000111144 LTA4H 318199 sc-eQTL 2.12e-01 0.15 0.12 0.859 Mono L1
ENSG00000111145 ELK3 167344 sc-eQTL 6.43e-02 -0.149 0.0804 0.859 Mono L1
ENSG00000139343 SNRPF 502791 sc-eQTL 5.45e-01 -0.0463 0.0763 0.859 Mono L1
ENSG00000139350 NEDD1 -545504 sc-eQTL 5.44e-01 -0.0712 0.117 0.859 Mono L1
ENSG00000257715 AC007298.1 336396 sc-eQTL 3.67e-02 0.237 0.113 0.859 Mono L1
ENSG00000059758 CDK17 -38761 sc-eQTL 1.09e-01 -0.0999 0.0621 0.861 NK L1
ENSG00000111142 METAP2 888199 sc-eQTL 3.88e-01 0.0799 0.0923 0.861 NK L1
ENSG00000111144 LTA4H 318199 sc-eQTL 8.63e-02 -0.181 0.105 0.861 NK L1
ENSG00000111145 ELK3 167344 sc-eQTL 3.38e-01 -0.0963 0.1 0.861 NK L1
ENSG00000139343 SNRPF 502791 sc-eQTL 6.89e-01 -0.0334 0.0834 0.861 NK L1
ENSG00000139350 NEDD1 -545504 sc-eQTL 1.69e-01 -0.145 0.105 0.861 NK L1
ENSG00000059758 CDK17 -38761 sc-eQTL 2.89e-01 -0.0555 0.0522 0.859 Other_T L1
ENSG00000074527 NTN4 570567 sc-eQTL 4.14e-01 0.0791 0.0966 0.859 Other_T L1
ENSG00000111142 METAP2 888199 sc-eQTL 8.33e-01 0.021 0.0999 0.859 Other_T L1
ENSG00000111144 LTA4H 318199 sc-eQTL 5.25e-02 -0.211 0.108 0.859 Other_T L1
ENSG00000111145 ELK3 167344 sc-eQTL 7.33e-01 -0.0291 0.0853 0.859 Other_T L1
ENSG00000139343 SNRPF 502791 sc-eQTL 4.81e-01 -0.0559 0.0792 0.859 Other_T L1
ENSG00000139350 NEDD1 -545504 sc-eQTL 8.90e-01 -0.0167 0.121 0.859 Other_T L1
ENSG00000188596 CFAP54 -127852 sc-eQTL 3.09e-01 -0.127 0.125 0.859 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -38761 sc-eQTL 5.68e-01 -0.0687 0.12 0.857 B_Activated L2
ENSG00000111142 METAP2 888199 sc-eQTL 6.44e-01 0.0701 0.151 0.857 B_Activated L2
ENSG00000111144 LTA4H 318199 sc-eQTL 5.17e-01 0.0882 0.136 0.857 B_Activated L2
ENSG00000111145 ELK3 167344 sc-eQTL 3.54e-01 -0.134 0.144 0.857 B_Activated L2
ENSG00000136014 USP44 810243 sc-eQTL 3.06e-01 -0.113 0.11 0.857 B_Activated L2
ENSG00000139343 SNRPF 502791 sc-eQTL 1.70e-01 -0.186 0.135 0.857 B_Activated L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 7.04e-01 0.0541 0.142 0.857 B_Activated L2
ENSG00000059758 CDK17 -38761 sc-eQTL 5.09e-01 -0.0687 0.104 0.858 B_Intermediate L2
ENSG00000111142 METAP2 888199 sc-eQTL 7.86e-01 -0.0324 0.119 0.858 B_Intermediate L2
ENSG00000111144 LTA4H 318199 sc-eQTL 4.38e-01 0.078 0.1 0.858 B_Intermediate L2
ENSG00000111145 ELK3 167344 sc-eQTL 5.51e-01 -0.0677 0.113 0.858 B_Intermediate L2
ENSG00000136014 USP44 810243 sc-eQTL 9.02e-01 -0.0164 0.134 0.858 B_Intermediate L2
ENSG00000139343 SNRPF 502791 sc-eQTL 7.23e-01 0.0401 0.113 0.858 B_Intermediate L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 7.89e-01 0.0355 0.132 0.858 B_Intermediate L2
ENSG00000059758 CDK17 -38761 sc-eQTL 5.84e-01 0.054 0.0983 0.858 B_Memory L2
ENSG00000111142 METAP2 888199 sc-eQTL 9.29e-01 0.0114 0.128 0.858 B_Memory L2
ENSG00000111144 LTA4H 318199 sc-eQTL 9.34e-02 0.19 0.113 0.858 B_Memory L2
ENSG00000111145 ELK3 167344 sc-eQTL 6.88e-01 -0.0449 0.112 0.858 B_Memory L2
ENSG00000136014 USP44 810243 sc-eQTL 2.38e-01 -0.144 0.122 0.858 B_Memory L2
ENSG00000139343 SNRPF 502791 sc-eQTL 7.93e-01 0.0311 0.118 0.858 B_Memory L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 2.87e-03 -0.387 0.128 0.858 B_Memory L2
ENSG00000059758 CDK17 -38761 sc-eQTL 4.79e-01 -0.0591 0.0834 0.859 B_Naive1 L2
ENSG00000111142 METAP2 888199 sc-eQTL 7.04e-01 0.041 0.108 0.859 B_Naive1 L2
ENSG00000111144 LTA4H 318199 sc-eQTL 8.70e-02 0.149 0.0868 0.859 B_Naive1 L2
ENSG00000111145 ELK3 167344 sc-eQTL 2.03e-01 -0.131 0.103 0.859 B_Naive1 L2
ENSG00000136014 USP44 810243 sc-eQTL 4.57e-01 -0.0966 0.13 0.859 B_Naive1 L2
ENSG00000139343 SNRPF 502791 sc-eQTL 1.90e-01 0.132 0.1 0.859 B_Naive1 L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 6.15e-01 0.0649 0.129 0.859 B_Naive1 L2
ENSG00000059758 CDK17 -38761 sc-eQTL 8.26e-01 -0.0231 0.105 0.858 B_Naive2 L2
ENSG00000111142 METAP2 888199 sc-eQTL 5.33e-01 -0.0788 0.126 0.858 B_Naive2 L2
ENSG00000111144 LTA4H 318199 sc-eQTL 6.14e-01 0.05 0.0992 0.858 B_Naive2 L2
ENSG00000111145 ELK3 167344 sc-eQTL 2.11e-01 -0.146 0.117 0.858 B_Naive2 L2
ENSG00000136014 USP44 810243 sc-eQTL 3.36e-01 -0.122 0.126 0.858 B_Naive2 L2
ENSG00000139343 SNRPF 502791 sc-eQTL 2.56e-01 0.132 0.116 0.858 B_Naive2 L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 3.60e-01 0.127 0.138 0.858 B_Naive2 L2
ENSG00000059758 CDK17 -38761 sc-eQTL 5.56e-01 -0.0567 0.0961 0.857 CD4_CTL L2
ENSG00000111142 METAP2 888199 sc-eQTL 3.32e-01 -0.134 0.137 0.857 CD4_CTL L2
ENSG00000111144 LTA4H 318199 sc-eQTL 1.76e-02 -0.32 0.134 0.857 CD4_CTL L2
ENSG00000111145 ELK3 167344 sc-eQTL 8.98e-01 0.0177 0.137 0.857 CD4_CTL L2
ENSG00000136014 USP44 810243 sc-eQTL 4.42e-01 0.0843 0.109 0.857 CD4_CTL L2
ENSG00000139343 SNRPF 502791 sc-eQTL 8.88e-01 -0.0168 0.119 0.857 CD4_CTL L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 5.78e-01 0.0768 0.138 0.857 CD4_CTL L2
ENSG00000059758 CDK17 -38761 sc-eQTL 9.75e-01 -0.00194 0.0611 0.859 CD4_Naive L2
ENSG00000111142 METAP2 888199 sc-eQTL 5.99e-01 0.0464 0.088 0.859 CD4_Naive L2
ENSG00000111144 LTA4H 318199 sc-eQTL 7.14e-01 -0.0324 0.0883 0.859 CD4_Naive L2
ENSG00000111145 ELK3 167344 sc-eQTL 6.12e-01 -0.0449 0.0883 0.859 CD4_Naive L2
ENSG00000136014 USP44 810243 sc-eQTL 3.32e-01 -0.12 0.124 0.859 CD4_Naive L2
ENSG00000139343 SNRPF 502791 sc-eQTL 8.72e-01 0.0127 0.0785 0.859 CD4_Naive L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 1.37e-01 -0.144 0.0962 0.859 CD4_Naive L2
ENSG00000059758 CDK17 -38761 sc-eQTL 2.77e-01 -0.0645 0.0592 0.859 CD4_TCM L2
ENSG00000111142 METAP2 888199 sc-eQTL 8.02e-01 -0.0254 0.101 0.859 CD4_TCM L2
ENSG00000111144 LTA4H 318199 sc-eQTL 4.96e-01 -0.0687 0.101 0.859 CD4_TCM L2
ENSG00000111145 ELK3 167344 sc-eQTL 1.32e-01 -0.149 0.0986 0.859 CD4_TCM L2
ENSG00000136014 USP44 810243 sc-eQTL 8.24e-01 -0.0305 0.137 0.859 CD4_TCM L2
ENSG00000139343 SNRPF 502791 sc-eQTL 9.47e-01 -0.00538 0.0813 0.859 CD4_TCM L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 3.32e-01 0.108 0.111 0.859 CD4_TCM L2
ENSG00000059758 CDK17 -38761 sc-eQTL 7.81e-01 -0.0204 0.0732 0.859 CD4_TEM L2
ENSG00000111142 METAP2 888199 sc-eQTL 2.92e-01 -0.129 0.122 0.859 CD4_TEM L2
ENSG00000111144 LTA4H 318199 sc-eQTL 1.78e-01 -0.152 0.113 0.859 CD4_TEM L2
ENSG00000111145 ELK3 167344 sc-eQTL 9.17e-01 -0.0109 0.105 0.859 CD4_TEM L2
ENSG00000136014 USP44 810243 sc-eQTL 9.74e-01 0.00418 0.129 0.859 CD4_TEM L2
ENSG00000139343 SNRPF 502791 sc-eQTL 4.89e-01 -0.0763 0.11 0.859 CD4_TEM L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 2.76e-01 -0.142 0.13 0.859 CD4_TEM L2
ENSG00000059758 CDK17 -38761 sc-eQTL 9.77e-03 -0.181 0.0695 0.859 CD8_CTL L2
ENSG00000111142 METAP2 888199 sc-eQTL 5.47e-01 -0.0736 0.122 0.859 CD8_CTL L2
ENSG00000111144 LTA4H 318199 sc-eQTL 1.08e-01 -0.205 0.127 0.859 CD8_CTL L2
ENSG00000111145 ELK3 167344 sc-eQTL 2.53e-01 -0.133 0.116 0.859 CD8_CTL L2
ENSG00000136014 USP44 810243 sc-eQTL 2.77e-01 0.141 0.129 0.859 CD8_CTL L2
ENSG00000139343 SNRPF 502791 sc-eQTL 9.23e-01 0.0103 0.107 0.859 CD8_CTL L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 6.47e-01 0.0548 0.12 0.859 CD8_CTL L2
ENSG00000059758 CDK17 -38761 sc-eQTL 2.55e-01 -0.0972 0.0852 0.859 CD8_Naive L2
ENSG00000111142 METAP2 888199 sc-eQTL 1.44e-01 0.166 0.113 0.859 CD8_Naive L2
ENSG00000111144 LTA4H 318199 sc-eQTL 4.33e-01 0.0803 0.102 0.859 CD8_Naive L2
ENSG00000111145 ELK3 167344 sc-eQTL 3.25e-01 -0.107 0.108 0.859 CD8_Naive L2
ENSG00000136014 USP44 810243 sc-eQTL 6.06e-01 -0.0588 0.114 0.859 CD8_Naive L2
ENSG00000139343 SNRPF 502791 sc-eQTL 7.39e-01 0.0325 0.0974 0.859 CD8_Naive L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 9.65e-03 -0.298 0.114 0.859 CD8_Naive L2
ENSG00000059758 CDK17 -38761 sc-eQTL 3.81e-01 0.0793 0.0904 0.852 CD8_TCM L2
ENSG00000111142 METAP2 888199 sc-eQTL 4.08e-01 -0.112 0.135 0.852 CD8_TCM L2
ENSG00000111144 LTA4H 318199 sc-eQTL 3.32e-01 0.129 0.133 0.852 CD8_TCM L2
ENSG00000111145 ELK3 167344 sc-eQTL 4.67e-01 0.082 0.113 0.852 CD8_TCM L2
ENSG00000136014 USP44 810243 sc-eQTL 1.90e-01 0.16 0.122 0.852 CD8_TCM L2
ENSG00000139343 SNRPF 502791 sc-eQTL 4.24e-01 -0.104 0.13 0.852 CD8_TCM L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 4.57e-04 -0.439 0.123 0.852 CD8_TCM L2
ENSG00000059758 CDK17 -38761 sc-eQTL 8.35e-01 -0.0242 0.116 0.863 CD8_TEM L2
ENSG00000111142 METAP2 888199 sc-eQTL 7.56e-01 -0.0422 0.136 0.863 CD8_TEM L2
ENSG00000111144 LTA4H 318199 sc-eQTL 5.01e-01 0.0955 0.142 0.863 CD8_TEM L2
ENSG00000111145 ELK3 167344 sc-eQTL 1.45e-01 -0.203 0.139 0.863 CD8_TEM L2
ENSG00000136014 USP44 810243 sc-eQTL 8.78e-01 -0.0183 0.119 0.863 CD8_TEM L2
ENSG00000139343 SNRPF 502791 sc-eQTL 9.30e-01 0.0113 0.13 0.863 CD8_TEM L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 9.37e-02 -0.235 0.14 0.863 CD8_TEM L2
ENSG00000059758 CDK17 -38761 sc-eQTL 1.38e-02 -0.188 0.0758 0.861 MAIT L2
ENSG00000074527 NTN4 570567 sc-eQTL 1.96e-01 0.134 0.103 0.861 MAIT L2
ENSG00000111142 METAP2 888199 sc-eQTL 4.75e-01 0.0933 0.13 0.861 MAIT L2
ENSG00000111144 LTA4H 318199 sc-eQTL 1.68e-01 -0.164 0.118 0.861 MAIT L2
ENSG00000111145 ELK3 167344 sc-eQTL 4.97e-01 -0.0677 0.0995 0.861 MAIT L2
ENSG00000139343 SNRPF 502791 sc-eQTL 4.90e-01 -0.0799 0.115 0.861 MAIT L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 2.44e-01 -0.151 0.129 0.861 MAIT L2
ENSG00000188596 CFAP54 -127852 sc-eQTL 8.01e-01 -0.0324 0.128 0.861 MAIT L2
ENSG00000059758 CDK17 -38761 sc-eQTL 3.15e-01 -0.0802 0.0795 0.856 NK_CD56bright L2
ENSG00000111142 METAP2 888199 sc-eQTL 8.94e-02 0.228 0.134 0.856 NK_CD56bright L2
ENSG00000111144 LTA4H 318199 sc-eQTL 6.59e-01 -0.0522 0.118 0.856 NK_CD56bright L2
ENSG00000111145 ELK3 167344 sc-eQTL 7.08e-01 0.0469 0.125 0.856 NK_CD56bright L2
ENSG00000139343 SNRPF 502791 sc-eQTL 3.94e-01 0.112 0.131 0.856 NK_CD56bright L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 5.61e-01 -0.0769 0.132 0.856 NK_CD56bright L2
ENSG00000059758 CDK17 -38761 sc-eQTL 4.88e-01 -0.0464 0.0668 0.86 NK_CD56dim L2
ENSG00000111142 METAP2 888199 sc-eQTL 5.44e-01 0.0711 0.117 0.86 NK_CD56dim L2
ENSG00000111144 LTA4H 318199 sc-eQTL 7.77e-02 -0.213 0.12 0.86 NK_CD56dim L2
ENSG00000111145 ELK3 167344 sc-eQTL 5.13e-01 -0.07 0.107 0.86 NK_CD56dim L2
ENSG00000139343 SNRPF 502791 sc-eQTL 6.06e-01 -0.0526 0.102 0.86 NK_CD56dim L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 6.82e-01 -0.048 0.117 0.86 NK_CD56dim L2
ENSG00000059758 CDK17 -38761 sc-eQTL 8.43e-02 -0.179 0.103 0.854 NK_HLA L2
ENSG00000111142 METAP2 888199 sc-eQTL 8.70e-02 0.224 0.13 0.854 NK_HLA L2
ENSG00000111144 LTA4H 318199 sc-eQTL 2.59e-02 -0.302 0.135 0.854 NK_HLA L2
ENSG00000111145 ELK3 167344 sc-eQTL 8.14e-01 -0.0297 0.126 0.854 NK_HLA L2
ENSG00000139343 SNRPF 502791 sc-eQTL 3.87e-01 0.114 0.132 0.854 NK_HLA L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 5.13e-01 -0.0817 0.125 0.854 NK_HLA L2
ENSG00000059758 CDK17 -38761 sc-eQTL 8.49e-02 -0.127 0.0732 0.86 NK_cytokine L2
ENSG00000111142 METAP2 888199 sc-eQTL 9.23e-01 -0.0118 0.122 0.86 NK_cytokine L2
ENSG00000111144 LTA4H 318199 sc-eQTL 4.72e-02 -0.247 0.123 0.86 NK_cytokine L2
ENSG00000111145 ELK3 167344 sc-eQTL 5.84e-01 -0.0654 0.119 0.86 NK_cytokine L2
ENSG00000139343 SNRPF 502791 sc-eQTL 8.95e-01 -0.0134 0.101 0.86 NK_cytokine L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 1.75e-01 -0.169 0.124 0.86 NK_cytokine L2
ENSG00000059758 CDK17 -38761 sc-eQTL 9.53e-01 0.00865 0.147 0.863 PB L2
ENSG00000111142 METAP2 888199 sc-eQTL 5.79e-01 0.0957 0.172 0.863 PB L2
ENSG00000111144 LTA4H 318199 sc-eQTL 6.58e-01 -0.0576 0.13 0.863 PB L2
ENSG00000111145 ELK3 167344 sc-eQTL 7.49e-02 -0.295 0.164 0.863 PB L2
ENSG00000136014 USP44 810243 sc-eQTL 1.19e-01 0.24 0.153 0.863 PB L2
ENSG00000139343 SNRPF 502791 sc-eQTL 4.25e-01 -0.13 0.162 0.863 PB L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 3.50e-01 0.181 0.192 0.863 PB L2
ENSG00000059758 CDK17 -38761 sc-eQTL 6.42e-01 0.0383 0.0822 0.857 Pro_T L2
ENSG00000074527 NTN4 570567 sc-eQTL 2.24e-01 0.112 0.092 0.857 Pro_T L2
ENSG00000111142 METAP2 888199 sc-eQTL 2.29e-01 -0.131 0.109 0.857 Pro_T L2
ENSG00000111144 LTA4H 318199 sc-eQTL 4.06e-02 -0.222 0.108 0.857 Pro_T L2
ENSG00000111145 ELK3 167344 sc-eQTL 6.86e-01 0.0531 0.131 0.857 Pro_T L2
ENSG00000139343 SNRPF 502791 sc-eQTL 6.07e-01 -0.0427 0.0828 0.857 Pro_T L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 9.08e-01 0.014 0.12 0.857 Pro_T L2
ENSG00000188596 CFAP54 -127852 sc-eQTL 9.94e-01 0.000737 0.0973 0.857 Pro_T L2
ENSG00000059758 CDK17 -38761 sc-eQTL 2.52e-01 -0.106 0.0927 0.859 Treg L2
ENSG00000111142 METAP2 888199 sc-eQTL 4.13e-02 0.257 0.125 0.859 Treg L2
ENSG00000111144 LTA4H 318199 sc-eQTL 9.63e-01 -0.00546 0.118 0.859 Treg L2
ENSG00000111145 ELK3 167344 sc-eQTL 7.36e-01 -0.036 0.107 0.859 Treg L2
ENSG00000136014 USP44 810243 sc-eQTL 7.24e-01 0.0423 0.12 0.859 Treg L2
ENSG00000139343 SNRPF 502791 sc-eQTL 3.88e-01 -0.107 0.123 0.859 Treg L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 8.41e-01 -0.0277 0.138 0.859 Treg L2
ENSG00000059758 CDK17 -38761 sc-eQTL 8.16e-01 -0.0258 0.11 0.854 cDC L2
ENSG00000084110 HAL 365354 sc-eQTL 4.11e-01 -0.0943 0.115 0.854 cDC L2
ENSG00000111142 METAP2 888199 sc-eQTL 7.89e-01 -0.0372 0.139 0.854 cDC L2
ENSG00000111144 LTA4H 318199 sc-eQTL 1.92e-01 0.128 0.0979 0.854 cDC L2
ENSG00000111145 ELK3 167344 sc-eQTL 1.71e-01 0.177 0.129 0.854 cDC L2
ENSG00000139343 SNRPF 502791 sc-eQTL 6.17e-01 0.0544 0.109 0.854 cDC L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 1.34e-01 -0.198 0.132 0.854 cDC L2
ENSG00000257715 AC007298.1 336396 sc-eQTL 9.77e-01 0.0032 0.112 0.854 cDC L2
ENSG00000059758 CDK17 -38761 sc-eQTL 4.92e-04 -0.337 0.0951 0.859 cMono_IL1B L2
ENSG00000084110 HAL 365354 sc-eQTL 9.22e-02 0.179 0.106 0.859 cMono_IL1B L2
ENSG00000111142 METAP2 888199 sc-eQTL 8.77e-01 0.0171 0.111 0.859 cMono_IL1B L2
ENSG00000111144 LTA4H 318199 sc-eQTL 2.95e-01 0.121 0.115 0.859 cMono_IL1B L2
ENSG00000111145 ELK3 167344 sc-eQTL 2.86e-01 -0.0949 0.0886 0.859 cMono_IL1B L2
ENSG00000139343 SNRPF 502791 sc-eQTL 2.79e-01 0.0993 0.0914 0.859 cMono_IL1B L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 5.88e-01 -0.0685 0.126 0.859 cMono_IL1B L2
ENSG00000257715 AC007298.1 336396 sc-eQTL 1.17e-02 0.295 0.116 0.859 cMono_IL1B L2
ENSG00000059758 CDK17 -38761 sc-eQTL 1.70e-01 -0.152 0.11 0.859 cMono_S100A L2
ENSG00000084110 HAL 365354 sc-eQTL 3.21e-01 0.123 0.124 0.859 cMono_S100A L2
ENSG00000111142 METAP2 888199 sc-eQTL 8.45e-02 0.216 0.125 0.859 cMono_S100A L2
ENSG00000111144 LTA4H 318199 sc-eQTL 2.95e-01 0.13 0.124 0.859 cMono_S100A L2
ENSG00000111145 ELK3 167344 sc-eQTL 6.28e-02 -0.188 0.1 0.859 cMono_S100A L2
ENSG00000139343 SNRPF 502791 sc-eQTL 2.17e-01 -0.123 0.0996 0.859 cMono_S100A L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 8.79e-01 -0.0206 0.135 0.859 cMono_S100A L2
ENSG00000257715 AC007298.1 336396 sc-eQTL 7.28e-02 0.227 0.126 0.859 cMono_S100A L2
ENSG00000059758 CDK17 -38761 sc-eQTL 4.14e-01 -0.0853 0.104 0.848 gdT L2
ENSG00000074527 NTN4 570567 sc-eQTL 8.98e-01 -0.0154 0.12 0.848 gdT L2
ENSG00000111142 METAP2 888199 sc-eQTL 9.26e-01 0.0139 0.15 0.848 gdT L2
ENSG00000111144 LTA4H 318199 sc-eQTL 8.49e-01 -0.0297 0.156 0.848 gdT L2
ENSG00000111145 ELK3 167344 sc-eQTL 9.77e-01 0.00421 0.145 0.848 gdT L2
ENSG00000139343 SNRPF 502791 sc-eQTL 9.86e-01 -0.00237 0.14 0.848 gdT L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 9.18e-01 -0.0158 0.154 0.848 gdT L2
ENSG00000188596 CFAP54 -127852 sc-eQTL 2.72e-01 0.148 0.135 0.848 gdT L2
ENSG00000059758 CDK17 -38761 sc-eQTL 6.98e-01 -0.0485 0.125 0.86 intMono L2
ENSG00000084110 HAL 365354 sc-eQTL 6.03e-01 -0.0657 0.126 0.86 intMono L2
ENSG00000111142 METAP2 888199 sc-eQTL 8.37e-02 0.247 0.142 0.86 intMono L2
ENSG00000111144 LTA4H 318199 sc-eQTL 3.44e-01 0.123 0.129 0.86 intMono L2
ENSG00000111145 ELK3 167344 sc-eQTL 3.21e-01 -0.115 0.115 0.86 intMono L2
ENSG00000139343 SNRPF 502791 sc-eQTL 9.53e-01 0.00723 0.123 0.86 intMono L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 7.32e-01 -0.044 0.128 0.86 intMono L2
ENSG00000257715 AC007298.1 336396 sc-eQTL 1.26e-01 0.197 0.128 0.86 intMono L2
ENSG00000059758 CDK17 -38761 sc-eQTL 6.30e-01 -0.0473 0.098 0.857 ncMono L2
ENSG00000084110 HAL 365354 sc-eQTL 8.45e-02 0.188 0.109 0.857 ncMono L2
ENSG00000111142 METAP2 888199 sc-eQTL 4.52e-01 0.0995 0.132 0.857 ncMono L2
ENSG00000111144 LTA4H 318199 sc-eQTL 6.30e-02 0.226 0.121 0.857 ncMono L2
ENSG00000111145 ELK3 167344 sc-eQTL 1.63e-01 -0.146 0.104 0.857 ncMono L2
ENSG00000139343 SNRPF 502791 sc-eQTL 3.42e-01 -0.102 0.107 0.857 ncMono L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 7.17e-01 -0.0412 0.114 0.857 ncMono L2
ENSG00000257715 AC007298.1 336396 sc-eQTL 2.15e-01 0.161 0.129 0.857 ncMono L2
ENSG00000059758 CDK17 -38761 sc-eQTL 6.93e-01 0.0506 0.128 0.842 pDC L2
ENSG00000084110 HAL 365354 sc-eQTL 4.46e-03 0.304 0.105 0.842 pDC L2
ENSG00000111142 METAP2 888199 sc-eQTL 5.07e-01 0.0969 0.146 0.842 pDC L2
ENSG00000111144 LTA4H 318199 sc-eQTL 9.96e-01 -0.000551 0.121 0.842 pDC L2
ENSG00000111145 ELK3 167344 sc-eQTL 8.43e-01 0.0294 0.148 0.842 pDC L2
ENSG00000139343 SNRPF 502791 sc-eQTL 7.47e-01 0.0417 0.129 0.842 pDC L2
ENSG00000139350 NEDD1 -545504 sc-eQTL 3.16e-02 0.304 0.14 0.842 pDC L2
ENSG00000257715 AC007298.1 336396 sc-eQTL 4.07e-01 0.101 0.122 0.842 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -38761 sc-eQTL 8.20e-01 -0.0198 0.0872 0.859 B_Memory LOneK1K
ENSG00000111142 METAP2 888199 sc-eQTL 7.10e-01 0.0452 0.121 0.859 B_Memory LOneK1K
ENSG00000111144 LTA4H 318199 sc-eQTL 4.29e-02 0.183 0.0897 0.859 B_Memory LOneK1K
ENSG00000111145 ELK3 167344 sc-eQTL 1.78e-01 -0.139 0.103 0.859 B_Memory LOneK1K
ENSG00000136014 USP44 810243 sc-eQTL 9.09e-01 -0.0147 0.129 0.859 B_Memory LOneK1K
ENSG00000139343 SNRPF 502791 sc-eQTL 4.63e-01 0.0737 0.1 0.859 B_Memory LOneK1K
ENSG00000139350 NEDD1 -545504 sc-eQTL 6.71e-02 -0.24 0.131 0.859 B_Memory LOneK1K
ENSG00000059758 CDK17 -38761 sc-eQTL 3.31e-01 -0.0729 0.0748 0.859 B_Naive LOneK1K
ENSG00000111142 METAP2 888199 sc-eQTL 5.72e-01 -0.0574 0.101 0.859 B_Naive LOneK1K
ENSG00000111144 LTA4H 318199 sc-eQTL 6.42e-02 0.155 0.0835 0.859 B_Naive LOneK1K
ENSG00000111145 ELK3 167344 sc-eQTL 4.37e-02 -0.193 0.095 0.859 B_Naive LOneK1K
ENSG00000136014 USP44 810243 sc-eQTL 9.51e-01 -0.00721 0.117 0.859 B_Naive LOneK1K
ENSG00000139343 SNRPF 502791 sc-eQTL 4.43e-01 0.0742 0.0964 0.859 B_Naive LOneK1K
ENSG00000139350 NEDD1 -545504 sc-eQTL 1.40e-01 0.189 0.127 0.859 B_Naive LOneK1K
ENSG00000059758 CDK17 -38761 sc-eQTL 1.56e-03 -0.277 0.0863 0.859 CD14_Mono LOneK1K
ENSG00000084110 HAL 365354 sc-eQTL 1.25e-01 0.164 0.106 0.859 CD14_Mono LOneK1K
ENSG00000111142 METAP2 888199 sc-eQTL 2.77e-01 0.11 0.101 0.859 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 318199 sc-eQTL 2.37e-01 0.139 0.117 0.859 CD14_Mono LOneK1K
ENSG00000111145 ELK3 167344 sc-eQTL 4.42e-02 -0.17 0.0841 0.859 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 502791 sc-eQTL 8.03e-01 -0.0205 0.0819 0.859 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -545504 sc-eQTL 5.90e-01 -0.0693 0.128 0.859 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 336396 sc-eQTL 2.38e-02 0.268 0.118 0.859 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -38761 sc-eQTL 3.09e-01 -0.0928 0.091 0.862 CD16_Mono LOneK1K
ENSG00000084110 HAL 365354 sc-eQTL 1.32e-01 0.162 0.107 0.862 CD16_Mono LOneK1K
ENSG00000111142 METAP2 888199 sc-eQTL 1.05e-01 0.198 0.122 0.862 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 318199 sc-eQTL 4.15e-02 0.243 0.118 0.862 CD16_Mono LOneK1K
ENSG00000111145 ELK3 167344 sc-eQTL 1.24e-01 -0.136 0.088 0.862 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 502791 sc-eQTL 9.45e-01 -0.00635 0.0912 0.862 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -545504 sc-eQTL 6.50e-01 -0.0532 0.117 0.862 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 336396 sc-eQTL 3.10e-01 0.126 0.124 0.862 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -38761 sc-eQTL 1.13e-01 -0.1 0.0628 0.86 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 888199 sc-eQTL 4.47e-01 0.0732 0.096 0.86 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 318199 sc-eQTL 3.42e-02 -0.232 0.109 0.86 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 167344 sc-eQTL 3.62e-01 -0.0918 0.1 0.86 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 502791 sc-eQTL 6.47e-01 -0.0394 0.086 0.86 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -545504 sc-eQTL 2.97e-01 -0.112 0.107 0.86 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 167344 eQTL 0.00526 -0.0723 0.0258 0.0 0.0 0.121

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000188596 \N -127856 4.35e-06 4.67e-06 8.3e-07 2.52e-06 1.1e-06 1.27e-06 3e-06 9.62e-07 4.13e-06 2.01e-06 4.14e-06 3.3e-06 6.55e-06 2.16e-06 1.3e-06 2.78e-06 2e-06 2.76e-06 1.39e-06 8.98e-07 2.28e-06 4.25e-06 3.51e-06 1.8e-06 4.78e-06 1.29e-06 2.1e-06 1.57e-06 3.78e-06 3.61e-06 1.95e-06 5.93e-07 7.95e-07 1.83e-06 1.92e-06 9.43e-07 9.13e-07 4.76e-07 1.23e-06 3.23e-07 2.79e-07 5.65e-06 3.65e-07 1.79e-07 3.65e-07 3.22e-07 7.28e-07 2.41e-07 1.94e-07