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Genes within 1Mb (chr12:96343062:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -57418 sc-eQTL 8.74e-01 0.00768 0.0484 0.652 B L1
ENSG00000111142 METAP2 869542 sc-eQTL 7.08e-01 -0.0256 0.0684 0.652 B L1
ENSG00000111144 LTA4H 299542 sc-eQTL 6.64e-01 0.0261 0.0601 0.652 B L1
ENSG00000111145 ELK3 148687 sc-eQTL 9.91e-02 -0.105 0.0636 0.652 B L1
ENSG00000136014 USP44 791586 sc-eQTL 9.33e-01 -0.00659 0.0789 0.652 B L1
ENSG00000139343 SNRPF 484134 sc-eQTL 6.06e-01 0.03 0.0581 0.652 B L1
ENSG00000139350 NEDD1 -564161 sc-eQTL 7.77e-01 -0.024 0.0848 0.652 B L1
ENSG00000059758 CDK17 -57418 sc-eQTL 9.17e-01 -0.00413 0.0397 0.652 CD4T L1
ENSG00000111142 METAP2 869542 sc-eQTL 7.26e-01 0.0194 0.0553 0.652 CD4T L1
ENSG00000111144 LTA4H 299542 sc-eQTL 2.14e-02 -0.125 0.0538 0.652 CD4T L1
ENSG00000111145 ELK3 148687 sc-eQTL 2.80e-01 -0.0637 0.0588 0.652 CD4T L1
ENSG00000136014 USP44 791586 sc-eQTL 6.82e-01 -0.0345 0.0841 0.652 CD4T L1
ENSG00000139343 SNRPF 484134 sc-eQTL 5.49e-01 -0.0309 0.0515 0.652 CD4T L1
ENSG00000139350 NEDD1 -564161 sc-eQTL 7.90e-01 0.0169 0.0635 0.652 CD4T L1
ENSG00000059758 CDK17 -57418 sc-eQTL 7.01e-01 0.0157 0.0407 0.652 CD8T L1
ENSG00000111142 METAP2 869542 sc-eQTL 6.40e-01 0.0308 0.0657 0.652 CD8T L1
ENSG00000111144 LTA4H 299542 sc-eQTL 5.43e-01 -0.0266 0.0437 0.652 CD8T L1
ENSG00000111145 ELK3 148687 sc-eQTL 3.73e-01 -0.0587 0.0657 0.652 CD8T L1
ENSG00000136014 USP44 791586 sc-eQTL 7.77e-01 -0.0212 0.0749 0.652 CD8T L1
ENSG00000139343 SNRPF 484134 sc-eQTL 5.69e-01 0.0307 0.0539 0.652 CD8T L1
ENSG00000139350 NEDD1 -564161 sc-eQTL 7.02e-02 -0.13 0.0712 0.652 CD8T L1
ENSG00000059758 CDK17 -57418 sc-eQTL 9.88e-01 0.00111 0.0747 0.646 DC L1
ENSG00000084110 HAL 346697 sc-eQTL 3.41e-01 0.081 0.0848 0.646 DC L1
ENSG00000111142 METAP2 869542 sc-eQTL 9.98e-01 0.0002 0.0937 0.646 DC L1
ENSG00000111144 LTA4H 299542 sc-eQTL 8.93e-01 0.0094 0.0695 0.646 DC L1
ENSG00000111145 ELK3 148687 sc-eQTL 3.20e-01 0.0847 0.0849 0.646 DC L1
ENSG00000139343 SNRPF 484134 sc-eQTL 8.90e-01 0.00976 0.0708 0.646 DC L1
ENSG00000139350 NEDD1 -564161 sc-eQTL 4.40e-01 0.0702 0.0908 0.646 DC L1
ENSG00000257715 AC007298.1 317739 sc-eQTL 5.08e-01 -0.0544 0.082 0.646 DC L1
ENSG00000059758 CDK17 -57418 sc-eQTL 8.45e-02 -0.108 0.0625 0.652 Mono L1
ENSG00000084110 HAL 346697 sc-eQTL 6.88e-02 0.144 0.0787 0.652 Mono L1
ENSG00000111142 METAP2 869542 sc-eQTL 4.46e-01 0.0523 0.0685 0.652 Mono L1
ENSG00000111144 LTA4H 299542 sc-eQTL 8.74e-01 -0.0142 0.0896 0.652 Mono L1
ENSG00000111145 ELK3 148687 sc-eQTL 8.91e-01 -0.00828 0.0602 0.652 Mono L1
ENSG00000139343 SNRPF 484134 sc-eQTL 1.81e-01 -0.0758 0.0565 0.652 Mono L1
ENSG00000139350 NEDD1 -564161 sc-eQTL 2.57e-01 -0.0987 0.0868 0.652 Mono L1
ENSG00000257715 AC007298.1 317739 sc-eQTL 5.80e-01 0.0468 0.0844 0.652 Mono L1
ENSG00000059758 CDK17 -57418 sc-eQTL 6.01e-02 0.0842 0.0446 0.652 NK L1
ENSG00000111142 METAP2 869542 sc-eQTL 7.38e-01 -0.0222 0.0665 0.652 NK L1
ENSG00000111144 LTA4H 299542 sc-eQTL 9.28e-01 -0.0069 0.0763 0.652 NK L1
ENSG00000111145 ELK3 148687 sc-eQTL 4.20e-01 0.0583 0.0723 0.652 NK L1
ENSG00000139343 SNRPF 484134 sc-eQTL 2.72e-01 -0.0658 0.0598 0.652 NK L1
ENSG00000139350 NEDD1 -564161 sc-eQTL 2.59e-02 -0.168 0.0751 0.652 NK L1
ENSG00000059758 CDK17 -57418 sc-eQTL 3.52e-01 -0.0351 0.0376 0.652 Other_T L1
ENSG00000074527 NTN4 551910 sc-eQTL 7.67e-01 -0.0207 0.0697 0.652 Other_T L1
ENSG00000111142 METAP2 869542 sc-eQTL 2.82e-01 0.0775 0.0718 0.652 Other_T L1
ENSG00000111144 LTA4H 299542 sc-eQTL 6.96e-01 -0.0309 0.0788 0.652 Other_T L1
ENSG00000111145 ELK3 148687 sc-eQTL 9.03e-01 -0.00752 0.0615 0.652 Other_T L1
ENSG00000139343 SNRPF 484134 sc-eQTL 7.83e-01 0.0157 0.0572 0.652 Other_T L1
ENSG00000139350 NEDD1 -564161 sc-eQTL 9.72e-01 -0.00309 0.087 0.652 Other_T L1
ENSG00000188596 CFAP54 -146509 sc-eQTL 9.48e-01 -0.0059 0.0901 0.652 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -57418 sc-eQTL 9.56e-01 0.00484 0.0873 0.651 B_Activated L2
ENSG00000111142 METAP2 869542 sc-eQTL 3.52e-02 0.23 0.108 0.651 B_Activated L2
ENSG00000111144 LTA4H 299542 sc-eQTL 6.83e-01 0.0404 0.0988 0.651 B_Activated L2
ENSG00000111145 ELK3 148687 sc-eQTL 4.47e-01 0.0796 0.105 0.651 B_Activated L2
ENSG00000136014 USP44 791586 sc-eQTL 6.08e-01 -0.0413 0.0803 0.651 B_Activated L2
ENSG00000139343 SNRPF 484134 sc-eQTL 7.92e-01 0.026 0.0987 0.651 B_Activated L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 4.25e-01 -0.0825 0.103 0.651 B_Activated L2
ENSG00000059758 CDK17 -57418 sc-eQTL 9.99e-01 8.19e-05 0.074 0.65 B_Intermediate L2
ENSG00000111142 METAP2 869542 sc-eQTL 4.79e-01 -0.0602 0.0847 0.65 B_Intermediate L2
ENSG00000111144 LTA4H 299542 sc-eQTL 8.69e-01 0.0118 0.0716 0.65 B_Intermediate L2
ENSG00000111145 ELK3 148687 sc-eQTL 6.70e-02 -0.148 0.0802 0.65 B_Intermediate L2
ENSG00000136014 USP44 791586 sc-eQTL 4.01e-01 -0.0801 0.0951 0.65 B_Intermediate L2
ENSG00000139343 SNRPF 484134 sc-eQTL 9.03e-01 -0.00979 0.0805 0.65 B_Intermediate L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 3.07e-01 -0.0962 0.094 0.65 B_Intermediate L2
ENSG00000059758 CDK17 -57418 sc-eQTL 6.58e-01 0.0322 0.0727 0.649 B_Memory L2
ENSG00000111142 METAP2 869542 sc-eQTL 5.02e-01 0.0635 0.0944 0.649 B_Memory L2
ENSG00000111144 LTA4H 299542 sc-eQTL 6.31e-01 0.0404 0.0839 0.649 B_Memory L2
ENSG00000111145 ELK3 148687 sc-eQTL 2.89e-01 -0.0874 0.0823 0.649 B_Memory L2
ENSG00000136014 USP44 791586 sc-eQTL 5.80e-01 0.0502 0.0905 0.649 B_Memory L2
ENSG00000139343 SNRPF 484134 sc-eQTL 1.33e-01 0.131 0.087 0.649 B_Memory L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 6.63e-02 -0.177 0.096 0.649 B_Memory L2
ENSG00000059758 CDK17 -57418 sc-eQTL 1.72e-01 -0.0825 0.0602 0.652 B_Naive1 L2
ENSG00000111142 METAP2 869542 sc-eQTL 8.20e-01 -0.0178 0.0782 0.652 B_Naive1 L2
ENSG00000111144 LTA4H 299542 sc-eQTL 7.79e-01 -0.0178 0.0633 0.652 B_Naive1 L2
ENSG00000111145 ELK3 148687 sc-eQTL 7.14e-01 -0.0275 0.0748 0.652 B_Naive1 L2
ENSG00000136014 USP44 791586 sc-eQTL 9.81e-01 0.00229 0.0941 0.652 B_Naive1 L2
ENSG00000139343 SNRPF 484134 sc-eQTL 4.21e-01 0.0587 0.0727 0.652 B_Naive1 L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 6.99e-01 -0.0361 0.0934 0.652 B_Naive1 L2
ENSG00000059758 CDK17 -57418 sc-eQTL 6.98e-01 0.0293 0.0752 0.65 B_Naive2 L2
ENSG00000111142 METAP2 869542 sc-eQTL 7.01e-01 0.0349 0.0907 0.65 B_Naive2 L2
ENSG00000111144 LTA4H 299542 sc-eQTL 8.92e-01 0.00972 0.0713 0.65 B_Naive2 L2
ENSG00000111145 ELK3 148687 sc-eQTL 3.12e-01 -0.0849 0.0838 0.65 B_Naive2 L2
ENSG00000136014 USP44 791586 sc-eQTL 3.55e-01 -0.084 0.0906 0.65 B_Naive2 L2
ENSG00000139343 SNRPF 484134 sc-eQTL 4.63e-02 0.166 0.0826 0.65 B_Naive2 L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 1.13e-01 0.157 0.0986 0.65 B_Naive2 L2
ENSG00000059758 CDK17 -57418 sc-eQTL 9.85e-01 0.00136 0.0699 0.645 CD4_CTL L2
ENSG00000111142 METAP2 869542 sc-eQTL 2.75e-01 0.109 0.0997 0.645 CD4_CTL L2
ENSG00000111144 LTA4H 299542 sc-eQTL 1.36e-01 -0.147 0.098 0.645 CD4_CTL L2
ENSG00000111145 ELK3 148687 sc-eQTL 6.54e-01 0.0447 0.0997 0.645 CD4_CTL L2
ENSG00000136014 USP44 791586 sc-eQTL 4.67e-01 0.0579 0.0795 0.645 CD4_CTL L2
ENSG00000139343 SNRPF 484134 sc-eQTL 7.49e-01 -0.0277 0.0867 0.645 CD4_CTL L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 1.39e-01 -0.148 0.0997 0.645 CD4_CTL L2
ENSG00000059758 CDK17 -57418 sc-eQTL 5.04e-01 0.0292 0.0437 0.652 CD4_Naive L2
ENSG00000111142 METAP2 869542 sc-eQTL 3.52e-01 0.0587 0.063 0.652 CD4_Naive L2
ENSG00000111144 LTA4H 299542 sc-eQTL 4.55e-03 -0.178 0.0621 0.652 CD4_Naive L2
ENSG00000111145 ELK3 148687 sc-eQTL 4.75e-01 -0.0452 0.0632 0.652 CD4_Naive L2
ENSG00000136014 USP44 791586 sc-eQTL 6.34e-01 -0.0423 0.0887 0.652 CD4_Naive L2
ENSG00000139343 SNRPF 484134 sc-eQTL 6.61e-01 -0.0246 0.0562 0.652 CD4_Naive L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 5.17e-01 -0.0449 0.0692 0.652 CD4_Naive L2
ENSG00000059758 CDK17 -57418 sc-eQTL 3.39e-01 -0.0409 0.0426 0.652 CD4_TCM L2
ENSG00000111142 METAP2 869542 sc-eQTL 3.93e-01 -0.0621 0.0726 0.652 CD4_TCM L2
ENSG00000111144 LTA4H 299542 sc-eQTL 6.98e-01 0.0281 0.0724 0.652 CD4_TCM L2
ENSG00000111145 ELK3 148687 sc-eQTL 3.95e-01 -0.0606 0.0711 0.652 CD4_TCM L2
ENSG00000136014 USP44 791586 sc-eQTL 8.36e-01 -0.0204 0.0985 0.652 CD4_TCM L2
ENSG00000139343 SNRPF 484134 sc-eQTL 9.60e-01 -0.00292 0.0585 0.652 CD4_TCM L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 2.75e-01 0.0872 0.0796 0.652 CD4_TCM L2
ENSG00000059758 CDK17 -57418 sc-eQTL 1.69e-01 0.0718 0.052 0.652 CD4_TEM L2
ENSG00000111142 METAP2 869542 sc-eQTL 6.97e-01 0.034 0.0872 0.652 CD4_TEM L2
ENSG00000111144 LTA4H 299542 sc-eQTL 4.98e-01 -0.0546 0.0805 0.652 CD4_TEM L2
ENSG00000111145 ELK3 148687 sc-eQTL 5.52e-01 -0.0446 0.0748 0.652 CD4_TEM L2
ENSG00000136014 USP44 791586 sc-eQTL 8.11e-01 -0.022 0.0921 0.652 CD4_TEM L2
ENSG00000139343 SNRPF 484134 sc-eQTL 1.55e-01 -0.111 0.078 0.652 CD4_TEM L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 5.64e-01 0.0536 0.0929 0.652 CD4_TEM L2
ENSG00000059758 CDK17 -57418 sc-eQTL 3.77e-01 0.0456 0.0515 0.652 CD8_CTL L2
ENSG00000111142 METAP2 869542 sc-eQTL 6.12e-01 -0.0453 0.0891 0.652 CD8_CTL L2
ENSG00000111144 LTA4H 299542 sc-eQTL 9.63e-01 -0.00434 0.0932 0.652 CD8_CTL L2
ENSG00000111145 ELK3 148687 sc-eQTL 2.80e-01 0.0916 0.0846 0.652 CD8_CTL L2
ENSG00000136014 USP44 791586 sc-eQTL 6.14e-01 0.0477 0.0945 0.652 CD8_CTL L2
ENSG00000139343 SNRPF 484134 sc-eQTL 8.20e-01 -0.0178 0.078 0.652 CD8_CTL L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 9.75e-01 0.00274 0.0875 0.652 CD8_CTL L2
ENSG00000059758 CDK17 -57418 sc-eQTL 8.12e-01 -0.0145 0.0608 0.652 CD8_Naive L2
ENSG00000111142 METAP2 869542 sc-eQTL 1.31e-01 0.122 0.0803 0.652 CD8_Naive L2
ENSG00000111144 LTA4H 299542 sc-eQTL 3.78e-01 0.0642 0.0727 0.652 CD8_Naive L2
ENSG00000111145 ELK3 148687 sc-eQTL 8.27e-01 -0.0169 0.077 0.652 CD8_Naive L2
ENSG00000136014 USP44 791586 sc-eQTL 2.56e-01 -0.0919 0.0807 0.652 CD8_Naive L2
ENSG00000139343 SNRPF 484134 sc-eQTL 9.14e-01 -0.00747 0.0693 0.652 CD8_Naive L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 8.22e-02 -0.143 0.0819 0.652 CD8_Naive L2
ENSG00000059758 CDK17 -57418 sc-eQTL 2.19e-01 0.0835 0.0676 0.646 CD8_TCM L2
ENSG00000111142 METAP2 869542 sc-eQTL 7.45e-01 -0.033 0.101 0.646 CD8_TCM L2
ENSG00000111144 LTA4H 299542 sc-eQTL 8.77e-01 -0.0154 0.0998 0.646 CD8_TCM L2
ENSG00000111145 ELK3 148687 sc-eQTL 4.57e-01 -0.0628 0.0844 0.646 CD8_TCM L2
ENSG00000136014 USP44 791586 sc-eQTL 4.77e-01 0.0651 0.0914 0.646 CD8_TCM L2
ENSG00000139343 SNRPF 484134 sc-eQTL 8.53e-01 0.018 0.0973 0.646 CD8_TCM L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 5.80e-01 -0.0528 0.0952 0.646 CD8_TCM L2
ENSG00000059758 CDK17 -57418 sc-eQTL 3.18e-01 0.0822 0.0821 0.662 CD8_TEM L2
ENSG00000111142 METAP2 869542 sc-eQTL 7.39e-01 0.0323 0.0966 0.662 CD8_TEM L2
ENSG00000111144 LTA4H 299542 sc-eQTL 8.38e-01 -0.0206 0.101 0.662 CD8_TEM L2
ENSG00000111145 ELK3 148687 sc-eQTL 1.32e-01 -0.149 0.0985 0.662 CD8_TEM L2
ENSG00000136014 USP44 791586 sc-eQTL 1.59e-01 0.119 0.0839 0.662 CD8_TEM L2
ENSG00000139343 SNRPF 484134 sc-eQTL 9.86e-01 0.00164 0.0921 0.662 CD8_TEM L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 4.45e-02 -0.2 0.099 0.662 CD8_TEM L2
ENSG00000059758 CDK17 -57418 sc-eQTL 3.77e-02 -0.116 0.0553 0.654 MAIT L2
ENSG00000074527 NTN4 551910 sc-eQTL 9.84e-01 0.00152 0.0753 0.654 MAIT L2
ENSG00000111142 METAP2 869542 sc-eQTL 1.08e-01 0.152 0.0942 0.654 MAIT L2
ENSG00000111144 LTA4H 299542 sc-eQTL 8.82e-01 0.0129 0.0862 0.654 MAIT L2
ENSG00000111145 ELK3 148687 sc-eQTL 6.03e-01 -0.0377 0.0723 0.654 MAIT L2
ENSG00000139343 SNRPF 484134 sc-eQTL 9.16e-01 -0.00883 0.0839 0.654 MAIT L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 5.55e-01 -0.0556 0.0941 0.654 MAIT L2
ENSG00000188596 CFAP54 -146509 sc-eQTL 8.02e-01 0.0235 0.0933 0.654 MAIT L2
ENSG00000059758 CDK17 -57418 sc-eQTL 4.64e-01 0.0419 0.0571 0.653 NK_CD56bright L2
ENSG00000111142 METAP2 869542 sc-eQTL 6.81e-01 0.0397 0.0965 0.653 NK_CD56bright L2
ENSG00000111144 LTA4H 299542 sc-eQTL 8.78e-01 -0.013 0.0846 0.653 NK_CD56bright L2
ENSG00000111145 ELK3 148687 sc-eQTL 8.62e-01 -0.0156 0.0898 0.653 NK_CD56bright L2
ENSG00000139343 SNRPF 484134 sc-eQTL 7.50e-01 -0.0299 0.0939 0.653 NK_CD56bright L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 7.10e-01 -0.0353 0.0947 0.653 NK_CD56bright L2
ENSG00000059758 CDK17 -57418 sc-eQTL 1.83e-02 0.116 0.0486 0.653 NK_CD56dim L2
ENSG00000111142 METAP2 869542 sc-eQTL 6.08e-01 -0.0443 0.0863 0.653 NK_CD56dim L2
ENSG00000111144 LTA4H 299542 sc-eQTL 4.91e-01 -0.0613 0.0889 0.653 NK_CD56dim L2
ENSG00000111145 ELK3 148687 sc-eQTL 5.66e-01 -0.0453 0.0787 0.653 NK_CD56dim L2
ENSG00000139343 SNRPF 484134 sc-eQTL 2.00e-01 -0.0961 0.0747 0.653 NK_CD56dim L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 4.35e-02 -0.174 0.0855 0.653 NK_CD56dim L2
ENSG00000059758 CDK17 -57418 sc-eQTL 6.56e-01 -0.034 0.076 0.655 NK_HLA L2
ENSG00000111142 METAP2 869542 sc-eQTL 2.21e-01 0.117 0.0954 0.655 NK_HLA L2
ENSG00000111144 LTA4H 299542 sc-eQTL 1.55e-01 -0.141 0.0992 0.655 NK_HLA L2
ENSG00000111145 ELK3 148687 sc-eQTL 2.80e-01 0.0998 0.0922 0.655 NK_HLA L2
ENSG00000139343 SNRPF 484134 sc-eQTL 8.60e-01 0.017 0.0964 0.655 NK_HLA L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 5.46e-01 -0.055 0.0911 0.655 NK_HLA L2
ENSG00000059758 CDK17 -57418 sc-eQTL 5.28e-01 0.034 0.0537 0.653 NK_cytokine L2
ENSG00000111142 METAP2 869542 sc-eQTL 6.63e-01 0.0389 0.0893 0.653 NK_cytokine L2
ENSG00000111144 LTA4H 299542 sc-eQTL 5.76e-01 0.0509 0.0909 0.653 NK_cytokine L2
ENSG00000111145 ELK3 148687 sc-eQTL 3.84e-01 0.0758 0.0869 0.653 NK_cytokine L2
ENSG00000139343 SNRPF 484134 sc-eQTL 2.07e-01 -0.0931 0.0735 0.653 NK_cytokine L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 6.92e-02 -0.165 0.0905 0.653 NK_cytokine L2
ENSG00000059758 CDK17 -57418 sc-eQTL 2.03e-01 0.125 0.0976 0.652 PB L2
ENSG00000111142 METAP2 869542 sc-eQTL 4.13e-01 0.0943 0.115 0.652 PB L2
ENSG00000111144 LTA4H 299542 sc-eQTL 4.07e-01 -0.072 0.0865 0.652 PB L2
ENSG00000111145 ELK3 148687 sc-eQTL 8.46e-01 0.0216 0.111 0.652 PB L2
ENSG00000136014 USP44 791586 sc-eQTL 2.30e-01 -0.124 0.102 0.652 PB L2
ENSG00000139343 SNRPF 484134 sc-eQTL 4.23e-01 -0.087 0.108 0.652 PB L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 7.82e-01 0.0357 0.129 0.652 PB L2
ENSG00000059758 CDK17 -57418 sc-eQTL 9.15e-01 -0.00645 0.0607 0.65 Pro_T L2
ENSG00000074527 NTN4 551910 sc-eQTL 6.35e-01 0.0324 0.0681 0.65 Pro_T L2
ENSG00000111142 METAP2 869542 sc-eQTL 7.25e-01 0.0283 0.0804 0.65 Pro_T L2
ENSG00000111144 LTA4H 299542 sc-eQTL 2.32e-01 -0.0957 0.0798 0.65 Pro_T L2
ENSG00000111145 ELK3 148687 sc-eQTL 2.58e-01 -0.11 0.0966 0.65 Pro_T L2
ENSG00000139343 SNRPF 484134 sc-eQTL 9.01e-01 -0.0076 0.0611 0.65 Pro_T L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 8.90e-01 0.0123 0.0887 0.65 Pro_T L2
ENSG00000188596 CFAP54 -146509 sc-eQTL 2.78e-01 -0.0779 0.0716 0.65 Pro_T L2
ENSG00000059758 CDK17 -57418 sc-eQTL 3.16e-01 -0.0663 0.066 0.652 Treg L2
ENSG00000111142 METAP2 869542 sc-eQTL 8.91e-01 -0.0123 0.09 0.652 Treg L2
ENSG00000111144 LTA4H 299542 sc-eQTL 6.35e-01 -0.0399 0.0837 0.652 Treg L2
ENSG00000111145 ELK3 148687 sc-eQTL 4.08e-01 -0.0629 0.0758 0.652 Treg L2
ENSG00000136014 USP44 791586 sc-eQTL 2.15e-01 0.106 0.0849 0.652 Treg L2
ENSG00000139343 SNRPF 484134 sc-eQTL 4.69e-02 0.174 0.0871 0.652 Treg L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 8.00e-01 0.0249 0.0981 0.652 Treg L2
ENSG00000059758 CDK17 -57418 sc-eQTL 6.65e-01 0.0344 0.0794 0.637 cDC L2
ENSG00000084110 HAL 346697 sc-eQTL 6.42e-01 -0.0384 0.0825 0.637 cDC L2
ENSG00000111142 METAP2 869542 sc-eQTL 6.63e-01 0.0435 0.0996 0.637 cDC L2
ENSG00000111144 LTA4H 299542 sc-eQTL 3.15e-01 0.0711 0.0705 0.637 cDC L2
ENSG00000111145 ELK3 148687 sc-eQTL 3.48e-01 0.0877 0.0931 0.637 cDC L2
ENSG00000139343 SNRPF 484134 sc-eQTL 7.17e-01 -0.0283 0.0781 0.637 cDC L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 7.85e-01 0.0261 0.0952 0.637 cDC L2
ENSG00000257715 AC007298.1 317739 sc-eQTL 9.59e-01 0.00414 0.0803 0.637 cDC L2
ENSG00000059758 CDK17 -57418 sc-eQTL 1.71e-03 -0.221 0.0696 0.652 cMono_IL1B L2
ENSG00000084110 HAL 346697 sc-eQTL 1.68e-01 0.107 0.0774 0.652 cMono_IL1B L2
ENSG00000111142 METAP2 869542 sc-eQTL 3.58e-01 0.0741 0.0804 0.652 cMono_IL1B L2
ENSG00000111144 LTA4H 299542 sc-eQTL 5.93e-01 -0.0449 0.0839 0.652 cMono_IL1B L2
ENSG00000111145 ELK3 148687 sc-eQTL 5.38e-01 -0.0399 0.0646 0.652 cMono_IL1B L2
ENSG00000139343 SNRPF 484134 sc-eQTL 5.84e-01 0.0365 0.0667 0.652 cMono_IL1B L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 7.27e-01 -0.0322 0.0919 0.652 cMono_IL1B L2
ENSG00000257715 AC007298.1 317739 sc-eQTL 1.63e-01 0.119 0.0854 0.652 cMono_IL1B L2
ENSG00000059758 CDK17 -57418 sc-eQTL 2.60e-01 -0.0905 0.0801 0.652 cMono_S100A L2
ENSG00000084110 HAL 346697 sc-eQTL 1.84e-01 0.12 0.0898 0.652 cMono_S100A L2
ENSG00000111142 METAP2 869542 sc-eQTL 8.58e-02 0.156 0.0906 0.652 cMono_S100A L2
ENSG00000111144 LTA4H 299542 sc-eQTL 5.76e-01 -0.0504 0.09 0.652 cMono_S100A L2
ENSG00000111145 ELK3 148687 sc-eQTL 5.06e-01 0.0488 0.0733 0.652 cMono_S100A L2
ENSG00000139343 SNRPF 484134 sc-eQTL 2.01e-02 -0.168 0.0716 0.652 cMono_S100A L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 2.19e-01 -0.12 0.0975 0.652 cMono_S100A L2
ENSG00000257715 AC007298.1 317739 sc-eQTL 8.58e-01 -0.0165 0.0921 0.652 cMono_S100A L2
ENSG00000059758 CDK17 -57418 sc-eQTL 7.48e-01 0.0246 0.0765 0.652 gdT L2
ENSG00000074527 NTN4 551910 sc-eQTL 7.01e-01 -0.0338 0.0877 0.652 gdT L2
ENSG00000111142 METAP2 869542 sc-eQTL 7.22e-01 -0.0392 0.11 0.652 gdT L2
ENSG00000111144 LTA4H 299542 sc-eQTL 2.96e-01 0.12 0.114 0.652 gdT L2
ENSG00000111145 ELK3 148687 sc-eQTL 1.46e-01 0.154 0.105 0.652 gdT L2
ENSG00000139343 SNRPF 484134 sc-eQTL 2.90e-02 0.222 0.101 0.652 gdT L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 2.09e-01 -0.142 0.112 0.652 gdT L2
ENSG00000188596 CFAP54 -146509 sc-eQTL 7.14e-01 0.0362 0.0989 0.652 gdT L2
ENSG00000059758 CDK17 -57418 sc-eQTL 7.26e-01 0.0317 0.0903 0.647 intMono L2
ENSG00000084110 HAL 346697 sc-eQTL 5.19e-01 0.059 0.0913 0.647 intMono L2
ENSG00000111142 METAP2 869542 sc-eQTL 9.15e-01 -0.0111 0.103 0.647 intMono L2
ENSG00000111144 LTA4H 299542 sc-eQTL 3.02e-01 0.0968 0.0935 0.647 intMono L2
ENSG00000111145 ELK3 148687 sc-eQTL 8.06e-01 -0.0205 0.0835 0.647 intMono L2
ENSG00000139343 SNRPF 484134 sc-eQTL 5.33e-02 -0.172 0.0884 0.647 intMono L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 8.47e-01 -0.018 0.0927 0.647 intMono L2
ENSG00000257715 AC007298.1 317739 sc-eQTL 3.32e-01 0.0904 0.093 0.647 intMono L2
ENSG00000059758 CDK17 -57418 sc-eQTL 3.09e-01 0.0742 0.0727 0.649 ncMono L2
ENSG00000084110 HAL 346697 sc-eQTL 7.21e-01 -0.0291 0.0813 0.649 ncMono L2
ENSG00000111142 METAP2 869542 sc-eQTL 9.30e-01 0.00859 0.0984 0.649 ncMono L2
ENSG00000111144 LTA4H 299542 sc-eQTL 6.67e-01 0.0391 0.0907 0.649 ncMono L2
ENSG00000111145 ELK3 148687 sc-eQTL 9.46e-01 0.00528 0.0779 0.649 ncMono L2
ENSG00000139343 SNRPF 484134 sc-eQTL 7.28e-02 -0.142 0.0789 0.649 ncMono L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 8.96e-01 0.0111 0.0845 0.649 ncMono L2
ENSG00000257715 AC007298.1 317739 sc-eQTL 7.05e-01 0.0366 0.0964 0.649 ncMono L2
ENSG00000059758 CDK17 -57418 sc-eQTL 9.19e-01 -0.00968 0.095 0.641 pDC L2
ENSG00000084110 HAL 346697 sc-eQTL 1.86e-03 0.246 0.0778 0.641 pDC L2
ENSG00000111142 METAP2 869542 sc-eQTL 7.82e-01 0.03 0.108 0.641 pDC L2
ENSG00000111144 LTA4H 299542 sc-eQTL 6.99e-01 -0.0348 0.0898 0.641 pDC L2
ENSG00000111145 ELK3 148687 sc-eQTL 6.29e-01 0.0531 0.11 0.641 pDC L2
ENSG00000139343 SNRPF 484134 sc-eQTL 8.07e-01 -0.0235 0.0958 0.641 pDC L2
ENSG00000139350 NEDD1 -564161 sc-eQTL 1.10e-01 0.169 0.105 0.641 pDC L2
ENSG00000257715 AC007298.1 317739 sc-eQTL 3.98e-01 0.0768 0.0905 0.641 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -57418 sc-eQTL 6.40e-01 0.0291 0.0622 0.652 B_Memory LOneK1K
ENSG00000111142 METAP2 869542 sc-eQTL 7.63e-01 0.0261 0.0865 0.652 B_Memory LOneK1K
ENSG00000111144 LTA4H 299542 sc-eQTL 5.25e-01 0.0411 0.0646 0.652 B_Memory LOneK1K
ENSG00000111145 ELK3 148687 sc-eQTL 5.29e-02 -0.143 0.0732 0.652 B_Memory LOneK1K
ENSG00000136014 USP44 791586 sc-eQTL 9.09e-01 -0.0105 0.0921 0.652 B_Memory LOneK1K
ENSG00000139343 SNRPF 484134 sc-eQTL 2.73e-01 0.0785 0.0714 0.652 B_Memory LOneK1K
ENSG00000139350 NEDD1 -564161 sc-eQTL 3.01e-02 -0.203 0.0929 0.652 B_Memory LOneK1K
ENSG00000059758 CDK17 -57418 sc-eQTL 1.73e-01 -0.0738 0.054 0.652 B_Naive LOneK1K
ENSG00000111142 METAP2 869542 sc-eQTL 9.29e-01 -0.00652 0.0735 0.652 B_Naive LOneK1K
ENSG00000111144 LTA4H 299542 sc-eQTL 7.08e-01 0.0228 0.0609 0.652 B_Naive LOneK1K
ENSG00000111145 ELK3 148687 sc-eQTL 1.17e-01 -0.108 0.0689 0.652 B_Naive LOneK1K
ENSG00000136014 USP44 791586 sc-eQTL 8.05e-01 0.021 0.0848 0.652 B_Naive LOneK1K
ENSG00000139343 SNRPF 484134 sc-eQTL 2.18e-01 0.0859 0.0696 0.652 B_Naive LOneK1K
ENSG00000139350 NEDD1 -564161 sc-eQTL 3.46e-01 0.0871 0.0922 0.652 B_Naive LOneK1K
ENSG00000059758 CDK17 -57418 sc-eQTL 3.36e-03 -0.189 0.0639 0.652 CD14_Mono LOneK1K
ENSG00000084110 HAL 346697 sc-eQTL 1.93e-01 0.103 0.0786 0.652 CD14_Mono LOneK1K
ENSG00000111142 METAP2 869542 sc-eQTL 1.78e-01 0.1 0.074 0.652 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 299542 sc-eQTL 9.96e-01 -0.000411 0.0867 0.652 CD14_Mono LOneK1K
ENSG00000111145 ELK3 148687 sc-eQTL 7.88e-01 -0.0168 0.0626 0.652 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 484134 sc-eQTL 3.69e-01 -0.0543 0.0603 0.652 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -564161 sc-eQTL 2.73e-01 -0.104 0.0945 0.652 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 317739 sc-eQTL 3.85e-01 0.0763 0.0876 0.652 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -57418 sc-eQTL 6.40e-01 0.0309 0.066 0.653 CD16_Mono LOneK1K
ENSG00000084110 HAL 346697 sc-eQTL 7.03e-01 0.0298 0.0781 0.653 CD16_Mono LOneK1K
ENSG00000111142 METAP2 869542 sc-eQTL 8.35e-01 0.0184 0.0886 0.653 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 299542 sc-eQTL 8.10e-01 0.0209 0.0866 0.653 CD16_Mono LOneK1K
ENSG00000111145 ELK3 148687 sc-eQTL 3.36e-01 -0.0617 0.0639 0.653 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 484134 sc-eQTL 1.35e-01 -0.0986 0.0657 0.653 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -564161 sc-eQTL 4.96e-01 -0.0577 0.0846 0.653 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 317739 sc-eQTL 7.54e-01 0.0281 0.0897 0.653 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -57418 sc-eQTL 1.31e-01 0.0694 0.0457 0.653 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 869542 sc-eQTL 8.66e-01 -0.0118 0.07 0.653 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 299542 sc-eQTL 9.35e-01 0.00657 0.08 0.653 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 148687 sc-eQTL 6.83e-01 0.0299 0.0732 0.653 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 484134 sc-eQTL 1.21e-01 -0.097 0.0623 0.653 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -564161 sc-eQTL 2.98e-02 -0.169 0.0772 0.653 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000059758 CDK17 -57418 eQTL 3.78e-02 0.0258 0.0124 0.00112 0.0 0.334
ENSG00000111145 ELK3 148687 eQTL 1.77e-06 -0.0859 0.0179 0.0 0.0 0.334

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 ELK3 148687 3.58e-06 3.64e-06 5.96e-07 1.86e-06 7.73e-07 7.26e-07 2.53e-06 8.95e-07 2.52e-06 1.48e-06 3.2e-06 1.95e-06 4.9e-06 1.16e-06 8.74e-07 2e-06 1.58e-06 2.12e-06 1.6e-06 1.19e-06 1.81e-06 3.51e-06 3.49e-06 1.64e-06 4.56e-06 1.21e-06 1.6e-06 1.5e-06 3.55e-06 2.86e-06 1.98e-06 4.53e-07 5.88e-07 1.49e-06 1.91e-06 9.53e-07 9.08e-07 4.68e-07 1.34e-06 3.46e-07 2.8e-07 4.1e-06 5.42e-07 1.89e-07 3.63e-07 3.62e-07 8.3e-07 2.07e-07 1.74e-07
ENSG00000188596 \N -146513 3.75e-06 3.76e-06 5.8e-07 1.88e-06 7.94e-07 7.84e-07 2.43e-06 8.83e-07 2.68e-06 1.57e-06 3.22e-06 2e-06 5.39e-06 1.22e-06 9.36e-07 2.07e-06 1.55e-06 2.12e-06 1.57e-06 1.21e-06 1.8e-06 3.42e-06 3.25e-06 1.8e-06 4.53e-06 1.14e-06 1.57e-06 1.43e-06 3.79e-06 2.87e-06 1.97e-06 4.54e-07 6.09e-07 1.49e-06 1.73e-06 9.36e-07 8.74e-07 4.52e-07 1.32e-06 3.64e-07 2.79e-07 4.15e-06 5.27e-07 1.89e-07 3.65e-07 3.8e-07 7.99e-07 2.07e-07 1.75e-07