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Genes within 1Mb (chr12:96334248:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -66232 sc-eQTL 9.93e-01 0.000413 0.0479 0.65 B L1
ENSG00000111142 METAP2 860728 sc-eQTL 6.30e-01 -0.0327 0.0677 0.65 B L1
ENSG00000111144 LTA4H 290728 sc-eQTL 6.99e-01 0.023 0.0594 0.65 B L1
ENSG00000111145 ELK3 139873 sc-eQTL 7.94e-02 -0.111 0.0628 0.65 B L1
ENSG00000136014 USP44 782772 sc-eQTL 9.82e-01 -0.00172 0.078 0.65 B L1
ENSG00000139343 SNRPF 475320 sc-eQTL 5.59e-01 0.0336 0.0575 0.65 B L1
ENSG00000139350 NEDD1 -572975 sc-eQTL 7.66e-01 -0.025 0.0839 0.65 B L1
ENSG00000059758 CDK17 -66232 sc-eQTL 8.67e-01 -0.00662 0.0393 0.65 CD4T L1
ENSG00000111142 METAP2 860728 sc-eQTL 8.04e-01 0.0136 0.0549 0.65 CD4T L1
ENSG00000111144 LTA4H 290728 sc-eQTL 2.42e-02 -0.121 0.0534 0.65 CD4T L1
ENSG00000111145 ELK3 139873 sc-eQTL 2.79e-01 -0.0633 0.0584 0.65 CD4T L1
ENSG00000136014 USP44 782772 sc-eQTL 7.47e-01 -0.027 0.0835 0.65 CD4T L1
ENSG00000139343 SNRPF 475320 sc-eQTL 5.66e-01 -0.0294 0.0511 0.65 CD4T L1
ENSG00000139350 NEDD1 -572975 sc-eQTL 7.56e-01 0.0196 0.063 0.65 CD4T L1
ENSG00000059758 CDK17 -66232 sc-eQTL 7.53e-01 0.0128 0.0404 0.65 CD8T L1
ENSG00000111142 METAP2 860728 sc-eQTL 6.32e-01 0.0313 0.0652 0.65 CD8T L1
ENSG00000111144 LTA4H 290728 sc-eQTL 6.25e-01 -0.0212 0.0434 0.65 CD8T L1
ENSG00000111145 ELK3 139873 sc-eQTL 3.95e-01 -0.0556 0.0653 0.65 CD8T L1
ENSG00000136014 USP44 782772 sc-eQTL 7.57e-01 -0.0231 0.0743 0.65 CD8T L1
ENSG00000139343 SNRPF 475320 sc-eQTL 5.63e-01 0.031 0.0535 0.65 CD8T L1
ENSG00000139350 NEDD1 -572975 sc-eQTL 7.50e-02 -0.126 0.0707 0.65 CD8T L1
ENSG00000059758 CDK17 -66232 sc-eQTL 9.13e-01 0.00811 0.074 0.644 DC L1
ENSG00000084110 HAL 337883 sc-eQTL 3.68e-01 0.0758 0.0841 0.644 DC L1
ENSG00000111142 METAP2 860728 sc-eQTL 9.36e-01 -0.00749 0.0929 0.644 DC L1
ENSG00000111144 LTA4H 290728 sc-eQTL 9.42e-01 -0.00501 0.0689 0.644 DC L1
ENSG00000111145 ELK3 139873 sc-eQTL 4.27e-01 0.0671 0.0843 0.644 DC L1
ENSG00000139343 SNRPF 475320 sc-eQTL 8.16e-01 0.0164 0.0702 0.644 DC L1
ENSG00000139350 NEDD1 -572975 sc-eQTL 4.72e-01 0.0649 0.09 0.644 DC L1
ENSG00000257715 AC007298.1 308925 sc-eQTL 4.65e-01 -0.0595 0.0813 0.644 DC L1
ENSG00000059758 CDK17 -66232 sc-eQTL 9.84e-02 -0.103 0.062 0.65 Mono L1
ENSG00000084110 HAL 337883 sc-eQTL 6.28e-02 0.146 0.078 0.65 Mono L1
ENSG00000111142 METAP2 860728 sc-eQTL 5.30e-01 0.0426 0.0678 0.65 Mono L1
ENSG00000111144 LTA4H 290728 sc-eQTL 7.35e-01 -0.0301 0.0887 0.65 Mono L1
ENSG00000111145 ELK3 139873 sc-eQTL 7.83e-01 -0.0164 0.0596 0.65 Mono L1
ENSG00000139343 SNRPF 475320 sc-eQTL 2.16e-01 -0.0695 0.056 0.65 Mono L1
ENSG00000139350 NEDD1 -572975 sc-eQTL 3.14e-01 -0.0869 0.0861 0.65 Mono L1
ENSG00000257715 AC007298.1 308925 sc-eQTL 6.93e-01 0.033 0.0836 0.65 Mono L1
ENSG00000059758 CDK17 -66232 sc-eQTL 7.63e-02 0.0789 0.0443 0.65 NK L1
ENSG00000111142 METAP2 860728 sc-eQTL 7.77e-01 -0.0187 0.066 0.65 NK L1
ENSG00000111144 LTA4H 290728 sc-eQTL 9.79e-01 -0.00201 0.0757 0.65 NK L1
ENSG00000111145 ELK3 139873 sc-eQTL 4.15e-01 0.0586 0.0717 0.65 NK L1
ENSG00000139343 SNRPF 475320 sc-eQTL 3.11e-01 -0.0603 0.0594 0.65 NK L1
ENSG00000139350 NEDD1 -572975 sc-eQTL 2.44e-02 -0.169 0.0745 0.65 NK L1
ENSG00000059758 CDK17 -66232 sc-eQTL 2.99e-01 -0.0388 0.0373 0.65 Other_T L1
ENSG00000074527 NTN4 543096 sc-eQTL 8.10e-01 -0.0167 0.0692 0.65 Other_T L1
ENSG00000111142 METAP2 860728 sc-eQTL 3.33e-01 0.0692 0.0713 0.65 Other_T L1
ENSG00000111144 LTA4H 290728 sc-eQTL 6.89e-01 -0.0314 0.0782 0.65 Other_T L1
ENSG00000111145 ELK3 139873 sc-eQTL 8.93e-01 -0.0082 0.061 0.65 Other_T L1
ENSG00000139343 SNRPF 475320 sc-eQTL 6.81e-01 0.0233 0.0567 0.65 Other_T L1
ENSG00000139350 NEDD1 -572975 sc-eQTL 9.62e-01 -0.0041 0.0864 0.65 Other_T L1
ENSG00000188596 CFAP54 -155323 sc-eQTL 9.04e-01 -0.0108 0.0895 0.65 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -66232 sc-eQTL 9.81e-01 -0.00209 0.0863 0.648 B_Activated L2
ENSG00000111142 METAP2 860728 sc-eQTL 5.06e-02 0.211 0.107 0.648 B_Activated L2
ENSG00000111144 LTA4H 290728 sc-eQTL 6.74e-01 0.0411 0.0977 0.648 B_Activated L2
ENSG00000111145 ELK3 139873 sc-eQTL 5.35e-01 0.0642 0.103 0.648 B_Activated L2
ENSG00000136014 USP44 782772 sc-eQTL 4.43e-01 -0.061 0.0793 0.648 B_Activated L2
ENSG00000139343 SNRPF 475320 sc-eQTL 9.28e-01 0.00878 0.0976 0.648 B_Activated L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 5.06e-01 -0.0679 0.102 0.648 B_Activated L2
ENSG00000059758 CDK17 -66232 sc-eQTL 9.67e-01 0.003 0.0734 0.648 B_Intermediate L2
ENSG00000111142 METAP2 860728 sc-eQTL 4.87e-01 -0.0585 0.0841 0.648 B_Intermediate L2
ENSG00000111144 LTA4H 290728 sc-eQTL 9.38e-01 -0.00551 0.0711 0.648 B_Intermediate L2
ENSG00000111145 ELK3 139873 sc-eQTL 5.86e-02 -0.151 0.0795 0.648 B_Intermediate L2
ENSG00000136014 USP44 782772 sc-eQTL 4.13e-01 -0.0774 0.0943 0.648 B_Intermediate L2
ENSG00000139343 SNRPF 475320 sc-eQTL 9.55e-01 -0.00454 0.0798 0.648 B_Intermediate L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 3.42e-01 -0.0888 0.0933 0.648 B_Intermediate L2
ENSG00000059758 CDK17 -66232 sc-eQTL 7.65e-01 0.0216 0.0721 0.647 B_Memory L2
ENSG00000111142 METAP2 860728 sc-eQTL 4.97e-01 0.0638 0.0936 0.647 B_Memory L2
ENSG00000111144 LTA4H 290728 sc-eQTL 6.30e-01 0.0402 0.0832 0.647 B_Memory L2
ENSG00000111145 ELK3 139873 sc-eQTL 3.16e-01 -0.0821 0.0816 0.647 B_Memory L2
ENSG00000136014 USP44 782772 sc-eQTL 6.41e-01 0.042 0.0898 0.647 B_Memory L2
ENSG00000139343 SNRPF 475320 sc-eQTL 1.12e-01 0.138 0.0862 0.647 B_Memory L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 6.02e-02 -0.18 0.0951 0.647 B_Memory L2
ENSG00000059758 CDK17 -66232 sc-eQTL 1.48e-01 -0.0865 0.0595 0.65 B_Naive1 L2
ENSG00000111142 METAP2 860728 sc-eQTL 7.00e-01 -0.0298 0.0774 0.65 B_Naive1 L2
ENSG00000111144 LTA4H 290728 sc-eQTL 7.69e-01 -0.0184 0.0626 0.65 B_Naive1 L2
ENSG00000111145 ELK3 139873 sc-eQTL 5.92e-01 -0.0397 0.074 0.65 B_Naive1 L2
ENSG00000136014 USP44 782772 sc-eQTL 8.55e-01 0.017 0.0931 0.65 B_Naive1 L2
ENSG00000139343 SNRPF 475320 sc-eQTL 4.64e-01 0.0528 0.0719 0.65 B_Naive1 L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 7.14e-01 -0.0339 0.0924 0.65 B_Naive1 L2
ENSG00000059758 CDK17 -66232 sc-eQTL 8.06e-01 0.0183 0.0745 0.648 B_Naive2 L2
ENSG00000111142 METAP2 860728 sc-eQTL 8.28e-01 0.0195 0.09 0.648 B_Naive2 L2
ENSG00000111144 LTA4H 290728 sc-eQTL 9.17e-01 0.00739 0.0706 0.648 B_Naive2 L2
ENSG00000111145 ELK3 139873 sc-eQTL 3.84e-01 -0.0725 0.0831 0.648 B_Naive2 L2
ENSG00000136014 USP44 782772 sc-eQTL 3.63e-01 -0.0818 0.0898 0.648 B_Naive2 L2
ENSG00000139343 SNRPF 475320 sc-eQTL 3.81e-02 0.171 0.0818 0.648 B_Naive2 L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 1.34e-01 0.147 0.0978 0.648 B_Naive2 L2
ENSG00000059758 CDK17 -66232 sc-eQTL 9.08e-01 -0.008 0.0693 0.643 CD4_CTL L2
ENSG00000111142 METAP2 860728 sc-eQTL 2.82e-01 0.107 0.0989 0.643 CD4_CTL L2
ENSG00000111144 LTA4H 290728 sc-eQTL 1.37e-01 -0.145 0.0972 0.643 CD4_CTL L2
ENSG00000111145 ELK3 139873 sc-eQTL 5.95e-01 0.0527 0.0989 0.643 CD4_CTL L2
ENSG00000136014 USP44 782772 sc-eQTL 4.37e-01 0.0614 0.0789 0.643 CD4_CTL L2
ENSG00000139343 SNRPF 475320 sc-eQTL 7.74e-01 -0.0248 0.086 0.643 CD4_CTL L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 1.42e-01 -0.146 0.0989 0.643 CD4_CTL L2
ENSG00000059758 CDK17 -66232 sc-eQTL 4.99e-01 0.0293 0.0434 0.65 CD4_Naive L2
ENSG00000111142 METAP2 860728 sc-eQTL 3.85e-01 0.0544 0.0625 0.65 CD4_Naive L2
ENSG00000111144 LTA4H 290728 sc-eQTL 4.36e-03 -0.178 0.0616 0.65 CD4_Naive L2
ENSG00000111145 ELK3 139873 sc-eQTL 4.47e-01 -0.0478 0.0627 0.65 CD4_Naive L2
ENSG00000136014 USP44 782772 sc-eQTL 7.23e-01 -0.0312 0.088 0.65 CD4_Naive L2
ENSG00000139343 SNRPF 475320 sc-eQTL 6.67e-01 -0.024 0.0558 0.65 CD4_Naive L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 5.72e-01 -0.0389 0.0687 0.65 CD4_Naive L2
ENSG00000059758 CDK17 -66232 sc-eQTL 3.02e-01 -0.0437 0.0422 0.65 CD4_TCM L2
ENSG00000111142 METAP2 860728 sc-eQTL 2.97e-01 -0.0752 0.0719 0.65 CD4_TCM L2
ENSG00000111144 LTA4H 290728 sc-eQTL 7.42e-01 0.0237 0.0718 0.65 CD4_TCM L2
ENSG00000111145 ELK3 139873 sc-eQTL 3.18e-01 -0.0705 0.0705 0.65 CD4_TCM L2
ENSG00000136014 USP44 782772 sc-eQTL 8.24e-01 -0.0217 0.0977 0.65 CD4_TCM L2
ENSG00000139343 SNRPF 475320 sc-eQTL 9.60e-01 -0.00288 0.058 0.65 CD4_TCM L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 3.22e-01 0.0785 0.079 0.65 CD4_TCM L2
ENSG00000059758 CDK17 -66232 sc-eQTL 2.39e-01 0.061 0.0516 0.65 CD4_TEM L2
ENSG00000111142 METAP2 860728 sc-eQTL 7.78e-01 0.0244 0.0866 0.65 CD4_TEM L2
ENSG00000111144 LTA4H 290728 sc-eQTL 6.18e-01 -0.04 0.0799 0.65 CD4_TEM L2
ENSG00000111145 ELK3 139873 sc-eQTL 6.97e-01 -0.029 0.0743 0.65 CD4_TEM L2
ENSG00000136014 USP44 782772 sc-eQTL 7.17e-01 -0.0332 0.0914 0.65 CD4_TEM L2
ENSG00000139343 SNRPF 475320 sc-eQTL 1.38e-01 -0.115 0.0774 0.65 CD4_TEM L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 5.79e-01 0.0513 0.0922 0.65 CD4_TEM L2
ENSG00000059758 CDK17 -66232 sc-eQTL 4.23e-01 0.041 0.0511 0.65 CD8_CTL L2
ENSG00000111142 METAP2 860728 sc-eQTL 6.27e-01 -0.0431 0.0885 0.65 CD8_CTL L2
ENSG00000111144 LTA4H 290728 sc-eQTL 9.78e-01 0.0025 0.0925 0.65 CD8_CTL L2
ENSG00000111145 ELK3 139873 sc-eQTL 2.82e-01 0.0906 0.084 0.65 CD8_CTL L2
ENSG00000136014 USP44 782772 sc-eQTL 6.23e-01 0.0461 0.0938 0.65 CD8_CTL L2
ENSG00000139343 SNRPF 475320 sc-eQTL 8.58e-01 -0.0138 0.0774 0.65 CD8_CTL L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 9.66e-01 0.00374 0.0868 0.65 CD8_CTL L2
ENSG00000059758 CDK17 -66232 sc-eQTL 8.17e-01 -0.014 0.0603 0.65 CD8_Naive L2
ENSG00000111142 METAP2 860728 sc-eQTL 1.33e-01 0.12 0.0797 0.65 CD8_Naive L2
ENSG00000111144 LTA4H 290728 sc-eQTL 3.57e-01 0.0666 0.0721 0.65 CD8_Naive L2
ENSG00000111145 ELK3 139873 sc-eQTL 8.84e-01 -0.0112 0.0764 0.65 CD8_Naive L2
ENSG00000136014 USP44 782772 sc-eQTL 2.42e-01 -0.0939 0.08 0.65 CD8_Naive L2
ENSG00000139343 SNRPF 475320 sc-eQTL 9.42e-01 -0.00498 0.0687 0.65 CD8_Naive L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 7.70e-02 -0.144 0.0812 0.65 CD8_Naive L2
ENSG00000059758 CDK17 -66232 sc-eQTL 2.19e-01 0.0826 0.067 0.644 CD8_TCM L2
ENSG00000111142 METAP2 860728 sc-eQTL 6.96e-01 -0.0393 0.1 0.644 CD8_TCM L2
ENSG00000111144 LTA4H 290728 sc-eQTL 9.90e-01 -0.00128 0.0989 0.644 CD8_TCM L2
ENSG00000111145 ELK3 139873 sc-eQTL 3.88e-01 -0.0723 0.0836 0.644 CD8_TCM L2
ENSG00000136014 USP44 782772 sc-eQTL 5.01e-01 0.0611 0.0906 0.644 CD8_TCM L2
ENSG00000139343 SNRPF 475320 sc-eQTL 9.59e-01 0.00496 0.0965 0.644 CD8_TCM L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 5.69e-01 -0.0539 0.0944 0.644 CD8_TCM L2
ENSG00000059758 CDK17 -66232 sc-eQTL 3.05e-01 0.0838 0.0814 0.66 CD8_TEM L2
ENSG00000111142 METAP2 860728 sc-eQTL 7.00e-01 0.0369 0.0958 0.66 CD8_TEM L2
ENSG00000111144 LTA4H 290728 sc-eQTL 8.72e-01 -0.0161 0.1 0.66 CD8_TEM L2
ENSG00000111145 ELK3 139873 sc-eQTL 1.29e-01 -0.149 0.0977 0.66 CD8_TEM L2
ENSG00000136014 USP44 782772 sc-eQTL 1.71e-01 0.114 0.0833 0.66 CD8_TEM L2
ENSG00000139343 SNRPF 475320 sc-eQTL 9.34e-01 -0.00759 0.0914 0.66 CD8_TEM L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 5.74e-02 -0.188 0.0983 0.66 CD8_TEM L2
ENSG00000059758 CDK17 -66232 sc-eQTL 3.27e-02 -0.118 0.0547 0.652 MAIT L2
ENSG00000074527 NTN4 543096 sc-eQTL 9.44e-01 0.00529 0.0745 0.652 MAIT L2
ENSG00000111142 METAP2 860728 sc-eQTL 1.48e-01 0.136 0.0934 0.652 MAIT L2
ENSG00000111144 LTA4H 290728 sc-eQTL 9.34e-01 0.00704 0.0854 0.652 MAIT L2
ENSG00000111145 ELK3 139873 sc-eQTL 6.03e-01 -0.0374 0.0717 0.652 MAIT L2
ENSG00000139343 SNRPF 475320 sc-eQTL 9.45e-01 0.00576 0.0831 0.652 MAIT L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 5.13e-01 -0.0611 0.0932 0.652 MAIT L2
ENSG00000188596 CFAP54 -155323 sc-eQTL 8.74e-01 0.0147 0.0924 0.652 MAIT L2
ENSG00000059758 CDK17 -66232 sc-eQTL 5.77e-01 0.0317 0.0567 0.651 NK_CD56bright L2
ENSG00000111142 METAP2 860728 sc-eQTL 6.08e-01 0.0492 0.0957 0.651 NK_CD56bright L2
ENSG00000111144 LTA4H 290728 sc-eQTL 9.46e-01 -0.00564 0.084 0.651 NK_CD56bright L2
ENSG00000111145 ELK3 139873 sc-eQTL 9.11e-01 -0.00994 0.0891 0.651 NK_CD56bright L2
ENSG00000139343 SNRPF 475320 sc-eQTL 7.09e-01 -0.0348 0.0932 0.651 NK_CD56bright L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 7.59e-01 -0.0289 0.094 0.651 NK_CD56bright L2
ENSG00000059758 CDK17 -66232 sc-eQTL 2.01e-02 0.113 0.0483 0.651 NK_CD56dim L2
ENSG00000111142 METAP2 860728 sc-eQTL 6.19e-01 -0.0427 0.0856 0.651 NK_CD56dim L2
ENSG00000111144 LTA4H 290728 sc-eQTL 5.16e-01 -0.0574 0.0882 0.651 NK_CD56dim L2
ENSG00000111145 ELK3 139873 sc-eQTL 5.86e-01 -0.0426 0.0781 0.651 NK_CD56dim L2
ENSG00000139343 SNRPF 475320 sc-eQTL 2.18e-01 -0.0916 0.0741 0.651 NK_CD56dim L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 4.22e-02 -0.173 0.0849 0.651 NK_CD56dim L2
ENSG00000059758 CDK17 -66232 sc-eQTL 5.81e-01 -0.0416 0.0753 0.653 NK_HLA L2
ENSG00000111142 METAP2 860728 sc-eQTL 2.35e-01 0.113 0.0946 0.653 NK_HLA L2
ENSG00000111144 LTA4H 290728 sc-eQTL 1.78e-01 -0.133 0.0983 0.653 NK_HLA L2
ENSG00000111145 ELK3 139873 sc-eQTL 3.00e-01 0.095 0.0914 0.653 NK_HLA L2
ENSG00000139343 SNRPF 475320 sc-eQTL 8.13e-01 0.0226 0.0955 0.653 NK_HLA L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 5.61e-01 -0.0526 0.0903 0.653 NK_HLA L2
ENSG00000059758 CDK17 -66232 sc-eQTL 5.72e-01 0.0301 0.0533 0.651 NK_cytokine L2
ENSG00000111142 METAP2 860728 sc-eQTL 6.08e-01 0.0455 0.0886 0.651 NK_cytokine L2
ENSG00000111144 LTA4H 290728 sc-eQTL 6.13e-01 0.0457 0.0902 0.651 NK_cytokine L2
ENSG00000111145 ELK3 139873 sc-eQTL 3.99e-01 0.0728 0.0862 0.651 NK_cytokine L2
ENSG00000139343 SNRPF 475320 sc-eQTL 2.41e-01 -0.0857 0.0729 0.651 NK_cytokine L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 5.33e-02 -0.174 0.0896 0.651 NK_cytokine L2
ENSG00000059758 CDK17 -66232 sc-eQTL 2.03e-01 0.125 0.0976 0.652 PB L2
ENSG00000111142 METAP2 860728 sc-eQTL 4.13e-01 0.0943 0.115 0.652 PB L2
ENSG00000111144 LTA4H 290728 sc-eQTL 4.07e-01 -0.072 0.0865 0.652 PB L2
ENSG00000111145 ELK3 139873 sc-eQTL 8.46e-01 0.0216 0.111 0.652 PB L2
ENSG00000136014 USP44 782772 sc-eQTL 2.30e-01 -0.124 0.102 0.652 PB L2
ENSG00000139343 SNRPF 475320 sc-eQTL 4.23e-01 -0.087 0.108 0.652 PB L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 7.82e-01 0.0357 0.129 0.652 PB L2
ENSG00000059758 CDK17 -66232 sc-eQTL 9.10e-01 -0.00679 0.0602 0.648 Pro_T L2
ENSG00000074527 NTN4 543096 sc-eQTL 5.78e-01 0.0377 0.0675 0.648 Pro_T L2
ENSG00000111142 METAP2 860728 sc-eQTL 7.48e-01 0.0257 0.0797 0.648 Pro_T L2
ENSG00000111144 LTA4H 290728 sc-eQTL 2.75e-01 -0.0867 0.0792 0.648 Pro_T L2
ENSG00000111145 ELK3 139873 sc-eQTL 2.26e-01 -0.116 0.0957 0.648 Pro_T L2
ENSG00000139343 SNRPF 475320 sc-eQTL 9.51e-01 -0.00372 0.0606 0.648 Pro_T L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 8.47e-01 0.017 0.088 0.648 Pro_T L2
ENSG00000188596 CFAP54 -155323 sc-eQTL 2.36e-01 -0.0843 0.0709 0.648 Pro_T L2
ENSG00000059758 CDK17 -66232 sc-eQTL 3.66e-01 -0.0594 0.0656 0.65 Treg L2
ENSG00000111142 METAP2 860728 sc-eQTL 9.23e-01 -0.0087 0.0894 0.65 Treg L2
ENSG00000111144 LTA4H 290728 sc-eQTL 7.07e-01 -0.0313 0.0832 0.65 Treg L2
ENSG00000111145 ELK3 139873 sc-eQTL 4.07e-01 -0.0625 0.0753 0.65 Treg L2
ENSG00000136014 USP44 782772 sc-eQTL 1.77e-01 0.114 0.0843 0.65 Treg L2
ENSG00000139343 SNRPF 475320 sc-eQTL 4.51e-02 0.174 0.0865 0.65 Treg L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 7.46e-01 0.0316 0.0974 0.65 Treg L2
ENSG00000059758 CDK17 -66232 sc-eQTL 5.99e-01 0.0414 0.0786 0.634 cDC L2
ENSG00000084110 HAL 337883 sc-eQTL 5.82e-01 -0.045 0.0817 0.634 cDC L2
ENSG00000111142 METAP2 860728 sc-eQTL 6.89e-01 0.0396 0.0987 0.634 cDC L2
ENSG00000111144 LTA4H 290728 sc-eQTL 4.12e-01 0.0575 0.0699 0.634 cDC L2
ENSG00000111145 ELK3 139873 sc-eQTL 4.32e-01 0.0727 0.0923 0.634 cDC L2
ENSG00000139343 SNRPF 475320 sc-eQTL 7.85e-01 -0.0211 0.0774 0.634 cDC L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 9.24e-01 0.00904 0.0943 0.634 cDC L2
ENSG00000257715 AC007298.1 308925 sc-eQTL 9.58e-01 -0.00421 0.0795 0.634 cDC L2
ENSG00000059758 CDK17 -66232 sc-eQTL 2.09e-03 -0.215 0.0691 0.65 cMono_IL1B L2
ENSG00000084110 HAL 337883 sc-eQTL 1.78e-01 0.104 0.0767 0.65 cMono_IL1B L2
ENSG00000111142 METAP2 860728 sc-eQTL 3.64e-01 0.0725 0.0797 0.65 cMono_IL1B L2
ENSG00000111144 LTA4H 290728 sc-eQTL 4.88e-01 -0.0578 0.0831 0.65 cMono_IL1B L2
ENSG00000111145 ELK3 139873 sc-eQTL 4.52e-01 -0.0482 0.064 0.65 cMono_IL1B L2
ENSG00000139343 SNRPF 475320 sc-eQTL 5.74e-01 0.0372 0.0661 0.65 cMono_IL1B L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 8.59e-01 -0.0162 0.0911 0.65 cMono_IL1B L2
ENSG00000257715 AC007298.1 308925 sc-eQTL 2.33e-01 0.101 0.0847 0.65 cMono_IL1B L2
ENSG00000059758 CDK17 -66232 sc-eQTL 2.95e-01 -0.0835 0.0795 0.65 cMono_S100A L2
ENSG00000084110 HAL 337883 sc-eQTL 1.71e-01 0.122 0.089 0.65 cMono_S100A L2
ENSG00000111142 METAP2 860728 sc-eQTL 1.07e-01 0.146 0.0899 0.65 cMono_S100A L2
ENSG00000111144 LTA4H 290728 sc-eQTL 4.56e-01 -0.0666 0.0892 0.65 cMono_S100A L2
ENSG00000111145 ELK3 139873 sc-eQTL 5.36e-01 0.0451 0.0727 0.65 cMono_S100A L2
ENSG00000139343 SNRPF 475320 sc-eQTL 2.86e-02 -0.157 0.0711 0.65 cMono_S100A L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 2.65e-01 -0.108 0.0968 0.65 cMono_S100A L2
ENSG00000257715 AC007298.1 308925 sc-eQTL 8.79e-01 -0.0139 0.0914 0.65 cMono_S100A L2
ENSG00000059758 CDK17 -66232 sc-eQTL 7.94e-01 0.0198 0.0756 0.648 gdT L2
ENSG00000074527 NTN4 543096 sc-eQTL 8.38e-01 -0.0178 0.0868 0.648 gdT L2
ENSG00000111142 METAP2 860728 sc-eQTL 7.22e-01 -0.0387 0.109 0.648 gdT L2
ENSG00000111144 LTA4H 290728 sc-eQTL 2.94e-01 0.119 0.113 0.648 gdT L2
ENSG00000111145 ELK3 139873 sc-eQTL 1.55e-01 0.149 0.104 0.648 gdT L2
ENSG00000139343 SNRPF 475320 sc-eQTL 3.25e-02 0.215 0.0994 0.648 gdT L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 2.26e-01 -0.135 0.111 0.648 gdT L2
ENSG00000188596 CFAP54 -155323 sc-eQTL 6.32e-01 0.0469 0.0977 0.648 gdT L2
ENSG00000059758 CDK17 -66232 sc-eQTL 7.87e-01 0.0242 0.0896 0.644 intMono L2
ENSG00000084110 HAL 337883 sc-eQTL 4.94e-01 0.062 0.0905 0.644 intMono L2
ENSG00000111142 METAP2 860728 sc-eQTL 8.44e-01 -0.0202 0.103 0.644 intMono L2
ENSG00000111144 LTA4H 290728 sc-eQTL 4.23e-01 0.0746 0.0928 0.644 intMono L2
ENSG00000111145 ELK3 139873 sc-eQTL 6.91e-01 -0.0329 0.0828 0.644 intMono L2
ENSG00000139343 SNRPF 475320 sc-eQTL 6.31e-02 -0.164 0.0877 0.644 intMono L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 8.76e-01 -0.0144 0.092 0.644 intMono L2
ENSG00000257715 AC007298.1 308925 sc-eQTL 3.66e-01 0.0836 0.0923 0.644 intMono L2
ENSG00000059758 CDK17 -66232 sc-eQTL 2.52e-01 0.0827 0.072 0.647 ncMono L2
ENSG00000084110 HAL 337883 sc-eQTL 8.17e-01 -0.0187 0.0807 0.647 ncMono L2
ENSG00000111142 METAP2 860728 sc-eQTL 9.55e-01 -0.00552 0.0976 0.647 ncMono L2
ENSG00000111144 LTA4H 290728 sc-eQTL 8.22e-01 0.0203 0.0899 0.647 ncMono L2
ENSG00000111145 ELK3 139873 sc-eQTL 9.34e-01 -0.00638 0.0772 0.647 ncMono L2
ENSG00000139343 SNRPF 475320 sc-eQTL 9.46e-02 -0.132 0.0783 0.647 ncMono L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 9.81e-01 0.00204 0.0838 0.647 ncMono L2
ENSG00000257715 AC007298.1 308925 sc-eQTL 8.97e-01 0.0124 0.0956 0.647 ncMono L2
ENSG00000059758 CDK17 -66232 sc-eQTL 9.43e-01 -0.00669 0.094 0.638 pDC L2
ENSG00000084110 HAL 337883 sc-eQTL 1.84e-03 0.244 0.0769 0.638 pDC L2
ENSG00000111142 METAP2 860728 sc-eQTL 8.94e-01 0.0143 0.107 0.638 pDC L2
ENSG00000111144 LTA4H 290728 sc-eQTL 5.58e-01 -0.0521 0.0888 0.638 pDC L2
ENSG00000111145 ELK3 139873 sc-eQTL 7.69e-01 0.0319 0.109 0.638 pDC L2
ENSG00000139343 SNRPF 475320 sc-eQTL 8.68e-01 -0.0158 0.0948 0.638 pDC L2
ENSG00000139350 NEDD1 -572975 sc-eQTL 9.57e-02 0.174 0.104 0.638 pDC L2
ENSG00000257715 AC007298.1 308925 sc-eQTL 3.82e-01 0.0784 0.0895 0.638 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -66232 sc-eQTL 6.85e-01 0.0251 0.0618 0.65 B_Memory LOneK1K
ENSG00000111142 METAP2 860728 sc-eQTL 7.78e-01 0.0242 0.0859 0.65 B_Memory LOneK1K
ENSG00000111144 LTA4H 290728 sc-eQTL 6.35e-01 0.0305 0.0641 0.65 B_Memory LOneK1K
ENSG00000111145 ELK3 139873 sc-eQTL 4.89e-02 -0.144 0.0727 0.65 B_Memory LOneK1K
ENSG00000136014 USP44 782772 sc-eQTL 8.89e-01 -0.0127 0.0914 0.65 B_Memory LOneK1K
ENSG00000139343 SNRPF 475320 sc-eQTL 2.48e-01 0.0821 0.0708 0.65 B_Memory LOneK1K
ENSG00000139350 NEDD1 -572975 sc-eQTL 3.61e-02 -0.195 0.0923 0.65 B_Memory LOneK1K
ENSG00000059758 CDK17 -66232 sc-eQTL 1.34e-01 -0.0803 0.0534 0.65 B_Naive LOneK1K
ENSG00000111142 METAP2 860728 sc-eQTL 7.42e-01 -0.0239 0.0727 0.65 B_Naive LOneK1K
ENSG00000111144 LTA4H 290728 sc-eQTL 7.08e-01 0.0226 0.0603 0.65 B_Naive LOneK1K
ENSG00000111145 ELK3 139873 sc-eQTL 1.02e-01 -0.112 0.0682 0.65 B_Naive LOneK1K
ENSG00000136014 USP44 782772 sc-eQTL 6.72e-01 0.0355 0.0839 0.65 B_Naive LOneK1K
ENSG00000139343 SNRPF 475320 sc-eQTL 2.30e-01 0.083 0.0689 0.65 B_Naive LOneK1K
ENSG00000139350 NEDD1 -572975 sc-eQTL 3.50e-01 0.0854 0.0913 0.65 B_Naive LOneK1K
ENSG00000059758 CDK17 -66232 sc-eQTL 4.52e-03 -0.182 0.0633 0.65 CD14_Mono LOneK1K
ENSG00000084110 HAL 337883 sc-eQTL 1.92e-01 0.102 0.0778 0.65 CD14_Mono LOneK1K
ENSG00000111142 METAP2 860728 sc-eQTL 2.02e-01 0.0939 0.0733 0.65 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 290728 sc-eQTL 8.31e-01 -0.0183 0.0858 0.65 CD14_Mono LOneK1K
ENSG00000111145 ELK3 139873 sc-eQTL 7.12e-01 -0.0229 0.062 0.65 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 475320 sc-eQTL 4.00e-01 -0.0504 0.0597 0.65 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -572975 sc-eQTL 3.68e-01 -0.0844 0.0937 0.65 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 308925 sc-eQTL 4.73e-01 0.0624 0.0868 0.65 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -66232 sc-eQTL 5.89e-01 0.0354 0.0655 0.651 CD16_Mono LOneK1K
ENSG00000084110 HAL 337883 sc-eQTL 6.16e-01 0.0389 0.0775 0.651 CD16_Mono LOneK1K
ENSG00000111142 METAP2 860728 sc-eQTL 9.52e-01 0.00529 0.088 0.651 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 290728 sc-eQTL 9.98e-01 0.000247 0.086 0.651 CD16_Mono LOneK1K
ENSG00000111145 ELK3 139873 sc-eQTL 2.53e-01 -0.0727 0.0634 0.651 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 475320 sc-eQTL 1.71e-01 -0.0896 0.0653 0.651 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -572975 sc-eQTL 4.57e-01 -0.0626 0.084 0.651 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 308925 sc-eQTL 9.23e-01 0.00861 0.089 0.651 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -66232 sc-eQTL 1.52e-01 0.0653 0.0454 0.651 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 860728 sc-eQTL 8.93e-01 -0.00933 0.0694 0.651 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 290728 sc-eQTL 9.12e-01 0.00881 0.0793 0.651 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 139873 sc-eQTL 6.85e-01 0.0295 0.0726 0.651 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 475320 sc-eQTL 1.50e-01 -0.0893 0.0618 0.651 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -572975 sc-eQTL 2.69e-02 -0.171 0.0766 0.651 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000059758 CDK17 -66232 eQTL 3.25e-02 0.0266 0.0124 0.00121 0.0 0.333
ENSG00000111145 ELK3 139873 eQTL 1.42e-06 -0.0869 0.0179 0.0 0.0 0.333

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 ELK3 139873 7.96e-06 4.98e-06 5.8e-07 2.32e-06 4.8e-07 1.6e-06 3.48e-06 6.45e-07 2.75e-06 1.4e-06 4.02e-06 1.98e-06 7.1e-06 1.33e-06 1.05e-06 1.99e-06 1.58e-06 2.96e-06 1.13e-06 1.42e-06 1.14e-06 4.1e-06 3.46e-06 9.81e-07 4.84e-06 1.24e-06 1.58e-06 1.81e-06 4.32e-06 3.09e-06 2.02e-06 2.51e-07 5.04e-07 1.22e-06 1.92e-06 9.75e-07 7.83e-07 3.9e-07 1.33e-06 3.46e-07 3.57e-07 5.62e-06 3.99e-07 6.46e-08 3.97e-07 3.32e-07 4.15e-07 2.65e-07 1.86e-07
ENSG00000188596 \N -155327 7.25e-06 4.7e-06 4.62e-07 1.9e-06 4.59e-07 1.57e-06 2.5e-06 5.61e-07 2.28e-06 1.06e-06 3.13e-06 1.49e-06 6.55e-06 1.4e-06 8.99e-07 1.93e-06 1.36e-06 2.54e-06 7.09e-07 1.13e-06 8.89e-07 3.43e-06 3.36e-06 9.14e-07 4.55e-06 1.21e-06 1.38e-06 1.6e-06 3.77e-06 2.55e-06 1.99e-06 2.84e-07 4.45e-07 1.12e-06 1.68e-06 9.6e-07 6.87e-07 3.44e-07 1.13e-06 2.29e-07 2.58e-07 5.26e-06 4.64e-07 4.15e-08 2.86e-07 2.82e-07 3.78e-07 2.1e-07 1.56e-07