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Genes within 1Mb (chr12:96327149:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -73331 sc-eQTL 6.00e-01 -0.0346 0.0659 0.853 B L1
ENSG00000111142 METAP2 853629 sc-eQTL 7.75e-01 0.0267 0.0933 0.853 B L1
ENSG00000111144 LTA4H 283629 sc-eQTL 3.23e-01 0.081 0.0818 0.853 B L1
ENSG00000111145 ELK3 132774 sc-eQTL 2.06e-02 -0.201 0.0861 0.853 B L1
ENSG00000136014 USP44 775673 sc-eQTL 8.06e-01 0.0264 0.108 0.853 B L1
ENSG00000139343 SNRPF 468221 sc-eQTL 4.81e-01 0.0559 0.0791 0.853 B L1
ENSG00000139350 NEDD1 -580074 sc-eQTL 6.98e-01 0.045 0.116 0.853 B L1
ENSG00000059758 CDK17 -73331 sc-eQTL 7.06e-01 -0.0203 0.0538 0.853 CD4T L1
ENSG00000111142 METAP2 853629 sc-eQTL 5.17e-01 0.0486 0.075 0.853 CD4T L1
ENSG00000111144 LTA4H 283629 sc-eQTL 5.38e-01 -0.0456 0.0738 0.853 CD4T L1
ENSG00000111145 ELK3 132774 sc-eQTL 9.10e-01 -0.00902 0.08 0.853 CD4T L1
ENSG00000136014 USP44 775673 sc-eQTL 2.94e-01 -0.12 0.114 0.853 CD4T L1
ENSG00000139343 SNRPF 468221 sc-eQTL 9.30e-01 -0.00617 0.0699 0.853 CD4T L1
ENSG00000139350 NEDD1 -580074 sc-eQTL 3.00e-01 -0.0893 0.0859 0.853 CD4T L1
ENSG00000059758 CDK17 -73331 sc-eQTL 2.95e-02 -0.122 0.0556 0.853 CD8T L1
ENSG00000111142 METAP2 853629 sc-eQTL 9.74e-01 0.00298 0.0907 0.853 CD8T L1
ENSG00000111144 LTA4H 283629 sc-eQTL 3.68e-01 -0.0543 0.0602 0.853 CD8T L1
ENSG00000111145 ELK3 132774 sc-eQTL 2.13e-01 -0.113 0.0905 0.853 CD8T L1
ENSG00000136014 USP44 775673 sc-eQTL 5.31e-01 -0.0647 0.103 0.853 CD8T L1
ENSG00000139343 SNRPF 468221 sc-eQTL 3.54e-01 0.069 0.0743 0.853 CD8T L1
ENSG00000139350 NEDD1 -580074 sc-eQTL 1.43e-02 -0.241 0.0975 0.853 CD8T L1
ENSG00000059758 CDK17 -73331 sc-eQTL 5.98e-01 0.0535 0.101 0.851 DC L1
ENSG00000084110 HAL 330784 sc-eQTL 2.65e-01 0.129 0.115 0.851 DC L1
ENSG00000111142 METAP2 853629 sc-eQTL 9.79e-01 0.00336 0.127 0.851 DC L1
ENSG00000111144 LTA4H 283629 sc-eQTL 5.32e-01 0.0591 0.0945 0.851 DC L1
ENSG00000111145 ELK3 132774 sc-eQTL 2.39e-01 0.136 0.115 0.851 DC L1
ENSG00000139343 SNRPF 468221 sc-eQTL 1.49e-01 0.139 0.0958 0.851 DC L1
ENSG00000139350 NEDD1 -580074 sc-eQTL 8.69e-01 0.0204 0.124 0.851 DC L1
ENSG00000257715 AC007298.1 301826 sc-eQTL 5.43e-01 -0.0679 0.111 0.851 DC L1
ENSG00000059758 CDK17 -73331 sc-eQTL 1.51e-03 -0.257 0.08 0.853 Mono L1
ENSG00000084110 HAL 330784 sc-eQTL 1.02e-01 0.168 0.103 0.853 Mono L1
ENSG00000111142 METAP2 853629 sc-eQTL 1.35e-01 0.133 0.0887 0.853 Mono L1
ENSG00000111144 LTA4H 283629 sc-eQTL 3.42e-01 0.111 0.116 0.853 Mono L1
ENSG00000111145 ELK3 132774 sc-eQTL 4.89e-02 -0.154 0.0776 0.853 Mono L1
ENSG00000139343 SNRPF 468221 sc-eQTL 6.43e-01 -0.0343 0.0738 0.853 Mono L1
ENSG00000139350 NEDD1 -580074 sc-eQTL 7.30e-01 -0.0392 0.113 0.853 Mono L1
ENSG00000257715 AC007298.1 301826 sc-eQTL 9.47e-02 0.183 0.109 0.853 Mono L1
ENSG00000059758 CDK17 -73331 sc-eQTL 7.91e-02 -0.106 0.0602 0.854 NK L1
ENSG00000111142 METAP2 853629 sc-eQTL 2.80e-01 0.0971 0.0896 0.854 NK L1
ENSG00000111144 LTA4H 283629 sc-eQTL 6.72e-02 -0.188 0.102 0.854 NK L1
ENSG00000111145 ELK3 132774 sc-eQTL 4.29e-01 -0.0774 0.0976 0.854 NK L1
ENSG00000139343 SNRPF 468221 sc-eQTL 9.34e-01 -0.00677 0.081 0.854 NK L1
ENSG00000139350 NEDD1 -580074 sc-eQTL 1.82e-01 -0.137 0.102 0.854 NK L1
ENSG00000059758 CDK17 -73331 sc-eQTL 1.25e-01 -0.0777 0.0504 0.853 Other_T L1
ENSG00000074527 NTN4 535997 sc-eQTL 5.37e-01 0.0579 0.0937 0.853 Other_T L1
ENSG00000111142 METAP2 853629 sc-eQTL 8.84e-01 0.0142 0.0968 0.853 Other_T L1
ENSG00000111144 LTA4H 283629 sc-eQTL 2.88e-02 -0.231 0.105 0.853 Other_T L1
ENSG00000111145 ELK3 132774 sc-eQTL 7.31e-01 -0.0285 0.0827 0.853 Other_T L1
ENSG00000139343 SNRPF 468221 sc-eQTL 7.35e-01 -0.026 0.0769 0.853 Other_T L1
ENSG00000139350 NEDD1 -580074 sc-eQTL 8.37e-01 -0.0241 0.117 0.853 Other_T L1
ENSG00000188596 CFAP54 -162422 sc-eQTL 3.96e-01 -0.103 0.121 0.853 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -73331 sc-eQTL 8.96e-01 -0.0152 0.117 0.852 B_Activated L2
ENSG00000111142 METAP2 853629 sc-eQTL 6.40e-01 0.0689 0.147 0.852 B_Activated L2
ENSG00000111144 LTA4H 283629 sc-eQTL 7.52e-01 0.0419 0.132 0.852 B_Activated L2
ENSG00000111145 ELK3 132774 sc-eQTL 2.64e-01 -0.156 0.14 0.852 B_Activated L2
ENSG00000136014 USP44 775673 sc-eQTL 3.65e-01 -0.0975 0.107 0.852 B_Activated L2
ENSG00000139343 SNRPF 468221 sc-eQTL 1.37e-01 -0.196 0.131 0.852 B_Activated L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 5.09e-01 0.0913 0.138 0.852 B_Activated L2
ENSG00000059758 CDK17 -73331 sc-eQTL 4.15e-01 -0.0821 0.1 0.852 B_Intermediate L2
ENSG00000111142 METAP2 853629 sc-eQTL 7.26e-01 -0.0405 0.115 0.852 B_Intermediate L2
ENSG00000111144 LTA4H 283629 sc-eQTL 8.20e-01 0.0222 0.0974 0.852 B_Intermediate L2
ENSG00000111145 ELK3 132774 sc-eQTL 7.93e-01 -0.0288 0.11 0.852 B_Intermediate L2
ENSG00000136014 USP44 775673 sc-eQTL 9.60e-01 -0.00657 0.13 0.852 B_Intermediate L2
ENSG00000139343 SNRPF 468221 sc-eQTL 6.45e-01 0.0505 0.109 0.852 B_Intermediate L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 8.97e-01 0.0166 0.128 0.852 B_Intermediate L2
ENSG00000059758 CDK17 -73331 sc-eQTL 6.73e-01 0.0404 0.0957 0.851 B_Memory L2
ENSG00000111142 METAP2 853629 sc-eQTL 6.71e-01 0.0529 0.124 0.851 B_Memory L2
ENSG00000111144 LTA4H 283629 sc-eQTL 3.32e-01 0.107 0.11 0.851 B_Memory L2
ENSG00000111145 ELK3 132774 sc-eQTL 7.81e-01 -0.0303 0.109 0.851 B_Memory L2
ENSG00000136014 USP44 775673 sc-eQTL 2.54e-01 -0.136 0.119 0.851 B_Memory L2
ENSG00000139343 SNRPF 468221 sc-eQTL 7.33e-01 0.0393 0.115 0.851 B_Memory L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 1.30e-02 -0.315 0.126 0.851 B_Memory L2
ENSG00000059758 CDK17 -73331 sc-eQTL 5.50e-01 -0.0484 0.0809 0.853 B_Naive1 L2
ENSG00000111142 METAP2 853629 sc-eQTL 6.10e-01 0.0534 0.105 0.853 B_Naive1 L2
ENSG00000111144 LTA4H 283629 sc-eQTL 1.34e-01 0.127 0.0843 0.853 B_Naive1 L2
ENSG00000111145 ELK3 132774 sc-eQTL 1.46e-01 -0.146 0.0997 0.853 B_Naive1 L2
ENSG00000136014 USP44 775673 sc-eQTL 5.04e-01 -0.0843 0.126 0.853 B_Naive1 L2
ENSG00000139343 SNRPF 468221 sc-eQTL 1.75e-01 0.132 0.0971 0.853 B_Naive1 L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 6.30e-01 0.0602 0.125 0.853 B_Naive1 L2
ENSG00000059758 CDK17 -73331 sc-eQTL 6.69e-01 -0.0435 0.101 0.852 B_Naive2 L2
ENSG00000111142 METAP2 853629 sc-eQTL 4.37e-01 -0.0954 0.122 0.852 B_Naive2 L2
ENSG00000111144 LTA4H 283629 sc-eQTL 8.86e-01 -0.0138 0.0962 0.852 B_Naive2 L2
ENSG00000111145 ELK3 132774 sc-eQTL 2.81e-01 -0.122 0.113 0.852 B_Naive2 L2
ENSG00000136014 USP44 775673 sc-eQTL 2.93e-01 -0.129 0.122 0.852 B_Naive2 L2
ENSG00000139343 SNRPF 468221 sc-eQTL 3.50e-01 0.105 0.112 0.852 B_Naive2 L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 6.10e-01 0.0684 0.134 0.852 B_Naive2 L2
ENSG00000059758 CDK17 -73331 sc-eQTL 2.96e-01 -0.0976 0.093 0.85 CD4_CTL L2
ENSG00000111142 METAP2 853629 sc-eQTL 4.19e-01 -0.108 0.133 0.85 CD4_CTL L2
ENSG00000111144 LTA4H 283629 sc-eQTL 1.15e-02 -0.33 0.129 0.85 CD4_CTL L2
ENSG00000111145 ELK3 132774 sc-eQTL 9.63e-01 0.00617 0.133 0.85 CD4_CTL L2
ENSG00000136014 USP44 775673 sc-eQTL 4.75e-01 0.076 0.106 0.85 CD4_CTL L2
ENSG00000139343 SNRPF 468221 sc-eQTL 7.27e-01 -0.0405 0.116 0.85 CD4_CTL L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 6.22e-01 0.0661 0.134 0.85 CD4_CTL L2
ENSG00000059758 CDK17 -73331 sc-eQTL 9.38e-01 0.0046 0.0593 0.853 CD4_Naive L2
ENSG00000111142 METAP2 853629 sc-eQTL 5.33e-01 0.0533 0.0854 0.853 CD4_Naive L2
ENSG00000111144 LTA4H 283629 sc-eQTL 8.31e-01 -0.0183 0.0857 0.853 CD4_Naive L2
ENSG00000111145 ELK3 132774 sc-eQTL 6.77e-01 -0.0358 0.0857 0.853 CD4_Naive L2
ENSG00000136014 USP44 775673 sc-eQTL 4.84e-01 -0.0842 0.12 0.853 CD4_Naive L2
ENSG00000139343 SNRPF 468221 sc-eQTL 6.97e-01 0.0297 0.0761 0.853 CD4_Naive L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 1.05e-01 -0.152 0.0932 0.853 CD4_Naive L2
ENSG00000059758 CDK17 -73331 sc-eQTL 2.18e-01 -0.071 0.0575 0.853 CD4_TCM L2
ENSG00000111142 METAP2 853629 sc-eQTL 6.99e-01 -0.0381 0.0982 0.853 CD4_TCM L2
ENSG00000111144 LTA4H 283629 sc-eQTL 3.83e-01 -0.0854 0.0977 0.853 CD4_TCM L2
ENSG00000111145 ELK3 132774 sc-eQTL 2.05e-01 -0.122 0.0959 0.853 CD4_TCM L2
ENSG00000136014 USP44 775673 sc-eQTL 8.13e-01 -0.0315 0.133 0.853 CD4_TCM L2
ENSG00000139343 SNRPF 468221 sc-eQTL 9.95e-01 0.000506 0.079 0.853 CD4_TCM L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 3.71e-01 0.0966 0.108 0.853 CD4_TCM L2
ENSG00000059758 CDK17 -73331 sc-eQTL 6.20e-01 -0.0352 0.071 0.853 CD4_TEM L2
ENSG00000111142 METAP2 853629 sc-eQTL 3.92e-01 -0.102 0.118 0.853 CD4_TEM L2
ENSG00000111144 LTA4H 283629 sc-eQTL 2.05e-01 -0.139 0.109 0.853 CD4_TEM L2
ENSG00000111145 ELK3 132774 sc-eQTL 8.19e-01 -0.0233 0.102 0.853 CD4_TEM L2
ENSG00000136014 USP44 775673 sc-eQTL 9.55e-01 -0.00709 0.125 0.853 CD4_TEM L2
ENSG00000139343 SNRPF 468221 sc-eQTL 6.01e-01 -0.0558 0.107 0.853 CD4_TEM L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 1.67e-01 -0.175 0.126 0.853 CD4_TEM L2
ENSG00000059758 CDK17 -73331 sc-eQTL 4.51e-03 -0.193 0.0671 0.853 CD8_CTL L2
ENSG00000111142 METAP2 853629 sc-eQTL 4.44e-01 -0.0905 0.118 0.853 CD8_CTL L2
ENSG00000111144 LTA4H 283629 sc-eQTL 1.57e-01 -0.175 0.123 0.853 CD8_CTL L2
ENSG00000111145 ELK3 132774 sc-eQTL 2.57e-01 -0.128 0.112 0.853 CD8_CTL L2
ENSG00000136014 USP44 775673 sc-eQTL 2.72e-01 0.138 0.125 0.853 CD8_CTL L2
ENSG00000139343 SNRPF 468221 sc-eQTL 8.08e-01 0.0252 0.103 0.853 CD8_CTL L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 6.21e-01 0.0573 0.116 0.853 CD8_CTL L2
ENSG00000059758 CDK17 -73331 sc-eQTL 2.48e-01 -0.0958 0.0827 0.853 CD8_Naive L2
ENSG00000111142 METAP2 853629 sc-eQTL 2.89e-01 0.117 0.11 0.853 CD8_Naive L2
ENSG00000111144 LTA4H 283629 sc-eQTL 6.57e-01 0.0442 0.0993 0.853 CD8_Naive L2
ENSG00000111145 ELK3 132774 sc-eQTL 6.59e-01 -0.0465 0.105 0.853 CD8_Naive L2
ENSG00000136014 USP44 775673 sc-eQTL 8.86e-01 -0.0158 0.11 0.853 CD8_Naive L2
ENSG00000139343 SNRPF 468221 sc-eQTL 8.27e-01 0.0207 0.0945 0.853 CD8_Naive L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 7.16e-03 -0.3 0.111 0.853 CD8_Naive L2
ENSG00000059758 CDK17 -73331 sc-eQTL 6.55e-01 0.0401 0.0895 0.845 CD8_TCM L2
ENSG00000111142 METAP2 853629 sc-eQTL 4.53e-01 -0.1 0.133 0.845 CD8_TCM L2
ENSG00000111144 LTA4H 283629 sc-eQTL 5.31e-01 0.0824 0.131 0.845 CD8_TCM L2
ENSG00000111145 ELK3 132774 sc-eQTL 4.54e-01 0.0835 0.111 0.845 CD8_TCM L2
ENSG00000136014 USP44 775673 sc-eQTL 2.72e-01 0.133 0.12 0.845 CD8_TCM L2
ENSG00000139343 SNRPF 468221 sc-eQTL 5.45e-01 -0.0778 0.128 0.845 CD8_TCM L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 2.57e-04 -0.452 0.121 0.845 CD8_TCM L2
ENSG00000059758 CDK17 -73331 sc-eQTL 6.66e-01 -0.0485 0.112 0.856 CD8_TEM L2
ENSG00000111142 METAP2 853629 sc-eQTL 7.77e-01 -0.0374 0.132 0.856 CD8_TEM L2
ENSG00000111144 LTA4H 283629 sc-eQTL 8.08e-01 0.0334 0.137 0.856 CD8_TEM L2
ENSG00000111145 ELK3 132774 sc-eQTL 2.07e-01 -0.17 0.135 0.856 CD8_TEM L2
ENSG00000136014 USP44 775673 sc-eQTL 9.24e-01 -0.011 0.115 0.856 CD8_TEM L2
ENSG00000139343 SNRPF 468221 sc-eQTL 8.62e-01 0.0219 0.126 0.856 CD8_TEM L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 1.98e-01 -0.175 0.136 0.856 CD8_TEM L2
ENSG00000059758 CDK17 -73331 sc-eQTL 4.88e-03 -0.208 0.0731 0.855 MAIT L2
ENSG00000074527 NTN4 535997 sc-eQTL 2.78e-01 0.109 0.1 0.855 MAIT L2
ENSG00000111142 METAP2 853629 sc-eQTL 6.27e-01 0.0614 0.126 0.855 MAIT L2
ENSG00000111144 LTA4H 283629 sc-eQTL 1.41e-01 -0.169 0.114 0.855 MAIT L2
ENSG00000111145 ELK3 132774 sc-eQTL 5.71e-01 -0.0548 0.0965 0.855 MAIT L2
ENSG00000139343 SNRPF 468221 sc-eQTL 5.84e-01 -0.0613 0.112 0.855 MAIT L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 2.17e-01 -0.155 0.125 0.855 MAIT L2
ENSG00000188596 CFAP54 -162422 sc-eQTL 9.59e-01 -0.00647 0.124 0.855 MAIT L2
ENSG00000059758 CDK17 -73331 sc-eQTL 2.14e-01 -0.0961 0.077 0.849 NK_CD56bright L2
ENSG00000111142 METAP2 853629 sc-eQTL 4.57e-02 0.26 0.129 0.849 NK_CD56bright L2
ENSG00000111144 LTA4H 283629 sc-eQTL 6.68e-01 -0.0491 0.114 0.849 NK_CD56bright L2
ENSG00000111145 ELK3 132774 sc-eQTL 4.88e-01 0.0843 0.121 0.849 NK_CD56bright L2
ENSG00000139343 SNRPF 468221 sc-eQTL 4.79e-01 0.09 0.127 0.849 NK_CD56bright L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 4.91e-01 -0.0884 0.128 0.849 NK_CD56bright L2
ENSG00000059758 CDK17 -73331 sc-eQTL 3.70e-01 -0.0582 0.0649 0.853 NK_CD56dim L2
ENSG00000111142 METAP2 853629 sc-eQTL 3.99e-01 0.0962 0.114 0.853 NK_CD56dim L2
ENSG00000111144 LTA4H 283629 sc-eQTL 7.06e-02 -0.212 0.116 0.853 NK_CD56dim L2
ENSG00000111145 ELK3 132774 sc-eQTL 4.51e-01 -0.0784 0.104 0.853 NK_CD56dim L2
ENSG00000139343 SNRPF 468221 sc-eQTL 7.67e-01 -0.0294 0.0989 0.853 NK_CD56dim L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 7.55e-01 -0.0356 0.114 0.853 NK_CD56dim L2
ENSG00000059758 CDK17 -73331 sc-eQTL 6.25e-02 -0.187 0.0998 0.847 NK_HLA L2
ENSG00000111142 METAP2 853629 sc-eQTL 1.06e-01 0.204 0.126 0.847 NK_HLA L2
ENSG00000111144 LTA4H 283629 sc-eQTL 1.80e-02 -0.31 0.13 0.847 NK_HLA L2
ENSG00000111145 ELK3 132774 sc-eQTL 8.78e-01 -0.0188 0.123 0.847 NK_HLA L2
ENSG00000139343 SNRPF 468221 sc-eQTL 3.11e-01 0.129 0.127 0.847 NK_HLA L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 7.37e-01 -0.0407 0.121 0.847 NK_HLA L2
ENSG00000059758 CDK17 -73331 sc-eQTL 9.81e-02 -0.118 0.0711 0.853 NK_cytokine L2
ENSG00000111142 METAP2 853629 sc-eQTL 8.45e-01 -0.0233 0.119 0.853 NK_cytokine L2
ENSG00000111144 LTA4H 283629 sc-eQTL 3.82e-02 -0.25 0.12 0.853 NK_cytokine L2
ENSG00000111145 ELK3 132774 sc-eQTL 6.88e-01 -0.0466 0.116 0.853 NK_cytokine L2
ENSG00000139343 SNRPF 468221 sc-eQTL 7.94e-01 0.0256 0.0981 0.853 NK_cytokine L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 1.23e-01 -0.187 0.121 0.853 NK_cytokine L2
ENSG00000059758 CDK17 -73331 sc-eQTL 8.83e-01 0.0206 0.14 0.856 PB L2
ENSG00000111142 METAP2 853629 sc-eQTL 7.55e-01 0.051 0.163 0.856 PB L2
ENSG00000111144 LTA4H 283629 sc-eQTL 4.71e-01 -0.0889 0.123 0.856 PB L2
ENSG00000111145 ELK3 132774 sc-eQTL 1.54e-01 -0.224 0.156 0.856 PB L2
ENSG00000136014 USP44 775673 sc-eQTL 2.57e-01 0.165 0.145 0.856 PB L2
ENSG00000139343 SNRPF 468221 sc-eQTL 4.83e-01 -0.108 0.154 0.856 PB L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 3.06e-01 0.187 0.182 0.856 PB L2
ENSG00000059758 CDK17 -73331 sc-eQTL 9.28e-01 0.00718 0.0797 0.85 Pro_T L2
ENSG00000074527 NTN4 535997 sc-eQTL 3.50e-01 0.0835 0.0892 0.85 Pro_T L2
ENSG00000111142 METAP2 853629 sc-eQTL 3.17e-01 -0.106 0.105 0.85 Pro_T L2
ENSG00000111144 LTA4H 283629 sc-eQTL 2.83e-02 -0.23 0.104 0.85 Pro_T L2
ENSG00000111145 ELK3 132774 sc-eQTL 7.27e-01 0.0444 0.127 0.85 Pro_T L2
ENSG00000139343 SNRPF 468221 sc-eQTL 9.47e-01 -0.00536 0.0802 0.85 Pro_T L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 9.70e-01 -0.00442 0.117 0.85 Pro_T L2
ENSG00000188596 CFAP54 -162422 sc-eQTL 8.83e-01 0.0138 0.0942 0.85 Pro_T L2
ENSG00000059758 CDK17 -73331 sc-eQTL 2.07e-01 -0.114 0.0901 0.853 Treg L2
ENSG00000111142 METAP2 853629 sc-eQTL 3.10e-02 0.264 0.122 0.853 Treg L2
ENSG00000111144 LTA4H 283629 sc-eQTL 8.93e-01 -0.0155 0.115 0.853 Treg L2
ENSG00000111145 ELK3 132774 sc-eQTL 7.48e-01 -0.0334 0.104 0.853 Treg L2
ENSG00000136014 USP44 775673 sc-eQTL 7.29e-01 0.0404 0.117 0.853 Treg L2
ENSG00000139343 SNRPF 468221 sc-eQTL 3.94e-01 -0.102 0.12 0.853 Treg L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 6.60e-01 -0.0592 0.134 0.853 Treg L2
ENSG00000059758 CDK17 -73331 sc-eQTL 4.84e-01 -0.0749 0.107 0.846 cDC L2
ENSG00000084110 HAL 330784 sc-eQTL 6.53e-01 -0.05 0.111 0.846 cDC L2
ENSG00000111142 METAP2 853629 sc-eQTL 8.17e-01 -0.0311 0.134 0.846 cDC L2
ENSG00000111144 LTA4H 283629 sc-eQTL 1.36e-01 0.142 0.0946 0.846 cDC L2
ENSG00000111145 ELK3 132774 sc-eQTL 1.54e-01 0.179 0.125 0.846 cDC L2
ENSG00000139343 SNRPF 468221 sc-eQTL 8.97e-01 0.0137 0.105 0.846 cDC L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 3.46e-02 -0.27 0.127 0.846 cDC L2
ENSG00000257715 AC007298.1 301826 sc-eQTL 9.11e-01 -0.0121 0.108 0.846 cDC L2
ENSG00000059758 CDK17 -73331 sc-eQTL 5.85e-04 -0.321 0.092 0.853 cMono_IL1B L2
ENSG00000084110 HAL 330784 sc-eQTL 1.71e-01 0.141 0.103 0.853 cMono_IL1B L2
ENSG00000111142 METAP2 853629 sc-eQTL 8.40e-01 0.0217 0.107 0.853 cMono_IL1B L2
ENSG00000111144 LTA4H 283629 sc-eQTL 4.03e-01 0.0933 0.111 0.853 cMono_IL1B L2
ENSG00000111145 ELK3 132774 sc-eQTL 2.08e-01 -0.108 0.0856 0.853 cMono_IL1B L2
ENSG00000139343 SNRPF 468221 sc-eQTL 2.51e-01 0.102 0.0883 0.853 cMono_IL1B L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 7.23e-01 -0.0433 0.122 0.853 cMono_IL1B L2
ENSG00000257715 AC007298.1 301826 sc-eQTL 2.31e-02 0.257 0.112 0.853 cMono_IL1B L2
ENSG00000059758 CDK17 -73331 sc-eQTL 1.46e-01 -0.155 0.106 0.853 cMono_S100A L2
ENSG00000084110 HAL 330784 sc-eQTL 2.95e-01 0.126 0.12 0.853 cMono_S100A L2
ENSG00000111142 METAP2 853629 sc-eQTL 9.97e-02 0.199 0.121 0.853 cMono_S100A L2
ENSG00000111144 LTA4H 283629 sc-eQTL 4.02e-01 0.101 0.12 0.853 cMono_S100A L2
ENSG00000111145 ELK3 132774 sc-eQTL 7.09e-02 -0.176 0.0969 0.853 cMono_S100A L2
ENSG00000139343 SNRPF 468221 sc-eQTL 3.17e-01 -0.0966 0.0963 0.853 cMono_S100A L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 8.34e-01 -0.0273 0.13 0.853 cMono_S100A L2
ENSG00000257715 AC007298.1 301826 sc-eQTL 1.62e-01 0.171 0.122 0.853 cMono_S100A L2
ENSG00000059758 CDK17 -73331 sc-eQTL 3.62e-01 -0.0943 0.103 0.842 gdT L2
ENSG00000074527 NTN4 535997 sc-eQTL 8.10e-01 -0.0286 0.119 0.842 gdT L2
ENSG00000111142 METAP2 853629 sc-eQTL 8.43e-01 0.0294 0.149 0.842 gdT L2
ENSG00000111144 LTA4H 283629 sc-eQTL 9.22e-01 -0.0152 0.155 0.842 gdT L2
ENSG00000111145 ELK3 132774 sc-eQTL 7.58e-01 -0.0443 0.143 0.842 gdT L2
ENSG00000139343 SNRPF 468221 sc-eQTL 9.60e-01 0.00689 0.138 0.842 gdT L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 9.38e-01 0.0119 0.153 0.842 gdT L2
ENSG00000188596 CFAP54 -162422 sc-eQTL 2.50e-01 0.154 0.133 0.842 gdT L2
ENSG00000059758 CDK17 -73331 sc-eQTL 4.82e-01 -0.0852 0.121 0.853 intMono L2
ENSG00000084110 HAL 330784 sc-eQTL 8.42e-01 -0.0244 0.122 0.853 intMono L2
ENSG00000111142 METAP2 853629 sc-eQTL 1.54e-01 0.197 0.138 0.853 intMono L2
ENSG00000111144 LTA4H 283629 sc-eQTL 6.52e-01 0.0566 0.125 0.853 intMono L2
ENSG00000111145 ELK3 132774 sc-eQTL 2.52e-01 -0.128 0.111 0.853 intMono L2
ENSG00000139343 SNRPF 468221 sc-eQTL 9.22e-01 0.0117 0.119 0.853 intMono L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 7.55e-01 -0.0388 0.124 0.853 intMono L2
ENSG00000257715 AC007298.1 301826 sc-eQTL 1.81e-01 0.167 0.124 0.853 intMono L2
ENSG00000059758 CDK17 -73331 sc-eQTL 6.02e-01 -0.0495 0.0948 0.851 ncMono L2
ENSG00000084110 HAL 330784 sc-eQTL 1.37e-01 0.157 0.105 0.851 ncMono L2
ENSG00000111142 METAP2 853629 sc-eQTL 3.82e-01 0.112 0.128 0.851 ncMono L2
ENSG00000111144 LTA4H 283629 sc-eQTL 8.58e-02 0.202 0.117 0.851 ncMono L2
ENSG00000111145 ELK3 132774 sc-eQTL 1.19e-01 -0.158 0.101 0.851 ncMono L2
ENSG00000139343 SNRPF 468221 sc-eQTL 3.85e-01 -0.09 0.103 0.851 ncMono L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 8.63e-01 -0.0189 0.11 0.851 ncMono L2
ENSG00000257715 AC007298.1 301826 sc-eQTL 1.84e-01 0.167 0.125 0.851 ncMono L2
ENSG00000059758 CDK17 -73331 sc-eQTL 5.78e-01 0.0685 0.123 0.833 pDC L2
ENSG00000084110 HAL 330784 sc-eQTL 8.67e-03 0.27 0.102 0.833 pDC L2
ENSG00000111142 METAP2 853629 sc-eQTL 4.27e-01 0.112 0.14 0.833 pDC L2
ENSG00000111144 LTA4H 283629 sc-eQTL 7.82e-01 -0.0322 0.116 0.833 pDC L2
ENSG00000111145 ELK3 132774 sc-eQTL 8.17e-01 -0.0331 0.142 0.833 pDC L2
ENSG00000139343 SNRPF 468221 sc-eQTL 3.91e-01 0.107 0.124 0.833 pDC L2
ENSG00000139350 NEDD1 -580074 sc-eQTL 1.70e-02 0.325 0.135 0.833 pDC L2
ENSG00000257715 AC007298.1 301826 sc-eQTL 3.48e-01 0.11 0.117 0.833 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -73331 sc-eQTL 7.96e-01 -0.0219 0.0847 0.853 B_Memory LOneK1K
ENSG00000111142 METAP2 853629 sc-eQTL 6.40e-01 0.0551 0.118 0.853 B_Memory LOneK1K
ENSG00000111144 LTA4H 283629 sc-eQTL 1.80e-01 0.118 0.0876 0.853 B_Memory LOneK1K
ENSG00000111145 ELK3 132774 sc-eQTL 3.37e-01 -0.0964 0.1 0.853 B_Memory LOneK1K
ENSG00000136014 USP44 775673 sc-eQTL 9.79e-01 -0.00328 0.125 0.853 B_Memory LOneK1K
ENSG00000139343 SNRPF 468221 sc-eQTL 4.26e-01 0.0775 0.0972 0.853 B_Memory LOneK1K
ENSG00000139350 NEDD1 -580074 sc-eQTL 1.15e-01 -0.201 0.127 0.853 B_Memory LOneK1K
ENSG00000059758 CDK17 -73331 sc-eQTL 3.28e-01 -0.0712 0.0726 0.853 B_Naive LOneK1K
ENSG00000111142 METAP2 853629 sc-eQTL 6.42e-01 -0.0458 0.0984 0.853 B_Naive LOneK1K
ENSG00000111144 LTA4H 283629 sc-eQTL 1.30e-01 0.124 0.0812 0.853 B_Naive LOneK1K
ENSG00000111145 ELK3 132774 sc-eQTL 3.50e-02 -0.195 0.092 0.853 B_Naive LOneK1K
ENSG00000136014 USP44 775673 sc-eQTL 9.55e-01 -0.00643 0.114 0.853 B_Naive LOneK1K
ENSG00000139343 SNRPF 468221 sc-eQTL 4.95e-01 0.0639 0.0935 0.853 B_Naive LOneK1K
ENSG00000139350 NEDD1 -580074 sc-eQTL 2.13e-01 0.154 0.123 0.853 B_Naive LOneK1K
ENSG00000059758 CDK17 -73331 sc-eQTL 1.47e-03 -0.269 0.0835 0.853 CD14_Mono LOneK1K
ENSG00000084110 HAL 330784 sc-eQTL 2.03e-01 0.132 0.103 0.853 CD14_Mono LOneK1K
ENSG00000111142 METAP2 853629 sc-eQTL 2.59e-01 0.11 0.0972 0.853 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 283629 sc-eQTL 3.34e-01 0.11 0.113 0.853 CD14_Mono LOneK1K
ENSG00000111145 ELK3 132774 sc-eQTL 3.42e-02 -0.173 0.0812 0.853 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 468221 sc-eQTL 9.74e-01 -0.00259 0.0792 0.853 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -580074 sc-eQTL 6.83e-01 -0.0508 0.124 0.853 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 301826 sc-eQTL 5.62e-02 0.219 0.114 0.853 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -73331 sc-eQTL 2.87e-01 -0.0939 0.088 0.856 CD16_Mono LOneK1K
ENSG00000084110 HAL 330784 sc-eQTL 1.70e-01 0.143 0.104 0.856 CD16_Mono LOneK1K
ENSG00000111142 METAP2 853629 sc-eQTL 1.22e-01 0.182 0.118 0.856 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 283629 sc-eQTL 8.06e-02 0.202 0.115 0.856 CD16_Mono LOneK1K
ENSG00000111145 ELK3 132774 sc-eQTL 1.07e-01 -0.138 0.085 0.856 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 468221 sc-eQTL 9.32e-01 0.00757 0.0882 0.856 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -580074 sc-eQTL 8.09e-01 -0.0273 0.113 0.856 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 301826 sc-eQTL 4.02e-01 0.1 0.12 0.856 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -73331 sc-eQTL 8.23e-02 -0.106 0.061 0.853 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 853629 sc-eQTL 3.71e-01 0.0836 0.0933 0.853 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 283629 sc-eQTL 2.60e-02 -0.237 0.106 0.853 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 132774 sc-eQTL 3.63e-01 -0.089 0.0976 0.853 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 468221 sc-eQTL 9.49e-01 -0.00535 0.0836 0.853 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -580074 sc-eQTL 3.19e-01 -0.104 0.104 0.853 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 132774 eQTL 0.00165 -0.0788 0.0249 0.0 0.0 0.13

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000188596 \N -162426 5.53e-06 4.63e-06 2.85e-07 1.79e-06 4.48e-07 1.27e-06 2.55e-06 5.6e-07 1.98e-06 7.42e-07 3.62e-06 1.33e-06 4.2e-06 1.34e-06 9.53e-07 1.52e-06 1.74e-06 2.16e-06 6.47e-07 8.39e-07 6.39e-07 3.18e-06 2.72e-06 9.91e-07 4.51e-06 1.26e-06 1.26e-06 8.36e-07 2.15e-06 2.56e-06 1.84e-06 1.85e-07 2.66e-07 1.14e-06 1.43e-06 4.89e-07 6.69e-07 1.5e-07 1.07e-06 3.46e-07 2.56e-07 5.27e-06 5.88e-07 1.81e-07 3.13e-07 3.08e-07 2.17e-07 8.74e-08 1.08e-07