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Genes within 1Mb (chr12:96298065:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -102415 sc-eQTL 8.56e-01 0.0087 0.0477 0.645 B L1
ENSG00000111142 METAP2 824545 sc-eQTL 7.79e-01 -0.019 0.0675 0.645 B L1
ENSG00000111144 LTA4H 254545 sc-eQTL 9.05e-01 0.00712 0.0593 0.645 B L1
ENSG00000111145 ELK3 103690 sc-eQTL 1.17e-01 -0.0989 0.0627 0.645 B L1
ENSG00000136014 USP44 746589 sc-eQTL 9.18e-01 -0.00806 0.0778 0.645 B L1
ENSG00000139343 SNRPF 439137 sc-eQTL 5.76e-01 0.0321 0.0573 0.645 B L1
ENSG00000139350 NEDD1 -609158 sc-eQTL 7.60e-01 -0.0255 0.0837 0.645 B L1
ENSG00000059758 CDK17 -102415 sc-eQTL 9.15e-01 -0.0042 0.0392 0.645 CD4T L1
ENSG00000111142 METAP2 824545 sc-eQTL 6.66e-01 0.0236 0.0547 0.645 CD4T L1
ENSG00000111144 LTA4H 254545 sc-eQTL 2.27e-02 -0.122 0.0532 0.645 CD4T L1
ENSG00000111145 ELK3 103690 sc-eQTL 3.13e-01 -0.0589 0.0582 0.645 CD4T L1
ENSG00000136014 USP44 746589 sc-eQTL 7.79e-01 -0.0233 0.0832 0.645 CD4T L1
ENSG00000139343 SNRPF 439137 sc-eQTL 6.45e-01 -0.0235 0.0509 0.645 CD4T L1
ENSG00000139350 NEDD1 -609158 sc-eQTL 9.17e-01 0.00655 0.0628 0.645 CD4T L1
ENSG00000059758 CDK17 -102415 sc-eQTL 9.72e-01 -0.00144 0.0403 0.645 CD8T L1
ENSG00000111142 METAP2 824545 sc-eQTL 8.08e-01 0.0158 0.0651 0.645 CD8T L1
ENSG00000111144 LTA4H 254545 sc-eQTL 4.07e-01 -0.0359 0.0432 0.645 CD8T L1
ENSG00000111145 ELK3 103690 sc-eQTL 4.64e-01 -0.0477 0.0651 0.645 CD8T L1
ENSG00000136014 USP44 746589 sc-eQTL 9.13e-01 -0.00812 0.0741 0.645 CD8T L1
ENSG00000139343 SNRPF 439137 sc-eQTL 5.15e-01 0.0348 0.0533 0.645 CD8T L1
ENSG00000139350 NEDD1 -609158 sc-eQTL 8.41e-02 -0.122 0.0705 0.645 CD8T L1
ENSG00000059758 CDK17 -102415 sc-eQTL 9.37e-01 -0.00582 0.0737 0.64 DC L1
ENSG00000084110 HAL 301700 sc-eQTL 3.09e-01 0.0853 0.0837 0.64 DC L1
ENSG00000111142 METAP2 824545 sc-eQTL 9.20e-01 0.00932 0.0925 0.64 DC L1
ENSG00000111144 LTA4H 254545 sc-eQTL 8.97e-01 0.00889 0.0686 0.64 DC L1
ENSG00000111145 ELK3 103690 sc-eQTL 3.62e-01 0.0766 0.0839 0.64 DC L1
ENSG00000139343 SNRPF 439137 sc-eQTL 8.36e-01 0.0145 0.0699 0.64 DC L1
ENSG00000139350 NEDD1 -609158 sc-eQTL 5.88e-01 0.0486 0.0897 0.64 DC L1
ENSG00000257715 AC007298.1 272742 sc-eQTL 4.47e-01 -0.0617 0.0809 0.64 DC L1
ENSG00000059758 CDK17 -102415 sc-eQTL 7.92e-02 -0.109 0.0615 0.645 Mono L1
ENSG00000084110 HAL 301700 sc-eQTL 1.02e-01 0.128 0.0776 0.645 Mono L1
ENSG00000111142 METAP2 824545 sc-eQTL 4.24e-01 0.0539 0.0674 0.645 Mono L1
ENSG00000111144 LTA4H 254545 sc-eQTL 7.28e-01 -0.0307 0.0882 0.645 Mono L1
ENSG00000111145 ELK3 103690 sc-eQTL 7.86e-01 -0.0161 0.0592 0.645 Mono L1
ENSG00000139343 SNRPF 439137 sc-eQTL 2.21e-01 -0.0683 0.0556 0.645 Mono L1
ENSG00000139350 NEDD1 -609158 sc-eQTL 3.51e-01 -0.08 0.0856 0.645 Mono L1
ENSG00000257715 AC007298.1 272742 sc-eQTL 7.74e-01 0.0238 0.0831 0.645 Mono L1
ENSG00000059758 CDK17 -102415 sc-eQTL 8.66e-02 0.076 0.0441 0.646 NK L1
ENSG00000111142 METAP2 824545 sc-eQTL 8.78e-01 -0.0102 0.0658 0.646 NK L1
ENSG00000111144 LTA4H 254545 sc-eQTL 8.35e-01 -0.0157 0.0754 0.646 NK L1
ENSG00000111145 ELK3 103690 sc-eQTL 3.69e-01 0.0643 0.0714 0.646 NK L1
ENSG00000139343 SNRPF 439137 sc-eQTL 3.89e-01 -0.0511 0.0592 0.646 NK L1
ENSG00000139350 NEDD1 -609158 sc-eQTL 2.76e-02 -0.165 0.0743 0.646 NK L1
ENSG00000059758 CDK17 -102415 sc-eQTL 1.97e-01 -0.048 0.0371 0.645 Other_T L1
ENSG00000074527 NTN4 506913 sc-eQTL 6.74e-01 -0.029 0.0688 0.645 Other_T L1
ENSG00000111142 METAP2 824545 sc-eQTL 3.08e-01 0.0726 0.0709 0.645 Other_T L1
ENSG00000111144 LTA4H 254545 sc-eQTL 5.43e-01 -0.0474 0.0778 0.645 Other_T L1
ENSG00000111145 ELK3 103690 sc-eQTL 8.96e-01 -0.00793 0.0607 0.645 Other_T L1
ENSG00000139343 SNRPF 439137 sc-eQTL 6.00e-01 0.0296 0.0564 0.645 Other_T L1
ENSG00000139350 NEDD1 -609158 sc-eQTL 9.30e-01 -0.00756 0.086 0.645 Other_T L1
ENSG00000188596 CFAP54 -191506 sc-eQTL 9.72e-01 0.00317 0.089 0.645 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -102415 sc-eQTL 7.14e-01 0.0314 0.0857 0.645 B_Activated L2
ENSG00000111142 METAP2 824545 sc-eQTL 3.74e-02 0.224 0.107 0.645 B_Activated L2
ENSG00000111144 LTA4H 254545 sc-eQTL 8.64e-01 0.0166 0.0971 0.645 B_Activated L2
ENSG00000111145 ELK3 103690 sc-eQTL 5.56e-01 0.0606 0.103 0.645 B_Activated L2
ENSG00000136014 USP44 746589 sc-eQTL 6.61e-01 -0.0346 0.0789 0.645 B_Activated L2
ENSG00000139343 SNRPF 439137 sc-eQTL 8.82e-01 0.0144 0.0969 0.645 B_Activated L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 5.68e-01 -0.0579 0.101 0.645 B_Activated L2
ENSG00000059758 CDK17 -102415 sc-eQTL 9.00e-01 -0.00916 0.073 0.644 B_Intermediate L2
ENSG00000111142 METAP2 824545 sc-eQTL 4.46e-01 -0.0638 0.0836 0.644 B_Intermediate L2
ENSG00000111144 LTA4H 254545 sc-eQTL 8.28e-01 -0.0154 0.0707 0.644 B_Intermediate L2
ENSG00000111145 ELK3 103690 sc-eQTL 1.15e-01 -0.125 0.0793 0.644 B_Intermediate L2
ENSG00000136014 USP44 746589 sc-eQTL 4.36e-01 -0.0733 0.0938 0.644 B_Intermediate L2
ENSG00000139343 SNRPF 439137 sc-eQTL 9.72e-01 -0.00277 0.0794 0.644 B_Intermediate L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 2.71e-01 -0.102 0.0927 0.644 B_Intermediate L2
ENSG00000059758 CDK17 -102415 sc-eQTL 7.25e-01 0.0252 0.0715 0.642 B_Memory L2
ENSG00000111142 METAP2 824545 sc-eQTL 3.61e-01 0.085 0.0928 0.642 B_Memory L2
ENSG00000111144 LTA4H 254545 sc-eQTL 9.84e-01 -0.00162 0.0826 0.642 B_Memory L2
ENSG00000111145 ELK3 103690 sc-eQTL 3.38e-01 -0.0779 0.081 0.642 B_Memory L2
ENSG00000136014 USP44 746589 sc-eQTL 5.83e-01 0.049 0.089 0.642 B_Memory L2
ENSG00000139343 SNRPF 439137 sc-eQTL 1.23e-01 0.132 0.0856 0.642 B_Memory L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 1.33e-01 -0.143 0.0947 0.642 B_Memory L2
ENSG00000059758 CDK17 -102415 sc-eQTL 2.00e-01 -0.0764 0.0594 0.645 B_Naive1 L2
ENSG00000111142 METAP2 824545 sc-eQTL 9.04e-01 -0.0093 0.0772 0.645 B_Naive1 L2
ENSG00000111144 LTA4H 254545 sc-eQTL 6.95e-01 -0.0245 0.0624 0.645 B_Naive1 L2
ENSG00000111145 ELK3 103690 sc-eQTL 6.01e-01 -0.0386 0.0738 0.645 B_Naive1 L2
ENSG00000136014 USP44 746589 sc-eQTL 9.50e-01 0.00578 0.0928 0.645 B_Naive1 L2
ENSG00000139343 SNRPF 439137 sc-eQTL 3.91e-01 0.0616 0.0717 0.645 B_Naive1 L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 7.00e-01 -0.0356 0.0921 0.645 B_Naive1 L2
ENSG00000059758 CDK17 -102415 sc-eQTL 8.21e-01 0.0168 0.0741 0.644 B_Naive2 L2
ENSG00000111142 METAP2 824545 sc-eQTL 8.01e-01 0.0225 0.0894 0.644 B_Naive2 L2
ENSG00000111144 LTA4H 254545 sc-eQTL 7.44e-01 -0.0229 0.0702 0.644 B_Naive2 L2
ENSG00000111145 ELK3 103690 sc-eQTL 3.70e-01 -0.0743 0.0826 0.644 B_Naive2 L2
ENSG00000136014 USP44 746589 sc-eQTL 3.18e-01 -0.0894 0.0892 0.644 B_Naive2 L2
ENSG00000139343 SNRPF 439137 sc-eQTL 6.59e-02 0.151 0.0815 0.644 B_Naive2 L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 1.99e-01 0.125 0.0973 0.644 B_Naive2 L2
ENSG00000059758 CDK17 -102415 sc-eQTL 7.41e-01 -0.0228 0.0689 0.639 CD4_CTL L2
ENSG00000111142 METAP2 824545 sc-eQTL 2.41e-01 0.116 0.0982 0.639 CD4_CTL L2
ENSG00000111144 LTA4H 254545 sc-eQTL 1.03e-01 -0.158 0.0965 0.639 CD4_CTL L2
ENSG00000111145 ELK3 103690 sc-eQTL 7.01e-01 0.0377 0.0983 0.639 CD4_CTL L2
ENSG00000136014 USP44 746589 sc-eQTL 4.87e-01 0.0546 0.0784 0.639 CD4_CTL L2
ENSG00000139343 SNRPF 439137 sc-eQTL 6.36e-01 -0.0404 0.0854 0.639 CD4_CTL L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 1.35e-01 -0.147 0.0983 0.639 CD4_CTL L2
ENSG00000059758 CDK17 -102415 sc-eQTL 4.60e-01 0.032 0.0432 0.645 CD4_Naive L2
ENSG00000111142 METAP2 824545 sc-eQTL 3.16e-01 0.0625 0.0622 0.645 CD4_Naive L2
ENSG00000111144 LTA4H 254545 sc-eQTL 6.99e-03 -0.167 0.0615 0.645 CD4_Naive L2
ENSG00000111145 ELK3 103690 sc-eQTL 5.15e-01 -0.0407 0.0625 0.645 CD4_Naive L2
ENSG00000136014 USP44 746589 sc-eQTL 7.67e-01 -0.026 0.0877 0.645 CD4_Naive L2
ENSG00000139343 SNRPF 439137 sc-eQTL 7.93e-01 -0.0146 0.0556 0.645 CD4_Naive L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 4.42e-01 -0.0527 0.0684 0.645 CD4_Naive L2
ENSG00000059758 CDK17 -102415 sc-eQTL 2.83e-01 -0.0453 0.0421 0.645 CD4_TCM L2
ENSG00000111142 METAP2 824545 sc-eQTL 3.43e-01 -0.0682 0.0717 0.645 CD4_TCM L2
ENSG00000111144 LTA4H 254545 sc-eQTL 8.19e-01 0.0164 0.0715 0.645 CD4_TCM L2
ENSG00000111145 ELK3 103690 sc-eQTL 4.85e-01 -0.0492 0.0703 0.645 CD4_TCM L2
ENSG00000136014 USP44 746589 sc-eQTL 8.26e-01 -0.0214 0.0973 0.645 CD4_TCM L2
ENSG00000139343 SNRPF 439137 sc-eQTL 9.98e-01 0.000136 0.0577 0.645 CD4_TCM L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 2.96e-01 0.0824 0.0787 0.645 CD4_TCM L2
ENSG00000059758 CDK17 -102415 sc-eQTL 2.32e-01 0.0616 0.0514 0.645 CD4_TEM L2
ENSG00000111142 METAP2 824545 sc-eQTL 6.14e-01 0.0435 0.0861 0.645 CD4_TEM L2
ENSG00000111144 LTA4H 254545 sc-eQTL 5.21e-01 -0.0512 0.0795 0.645 CD4_TEM L2
ENSG00000111145 ELK3 103690 sc-eQTL 4.96e-01 -0.0504 0.0739 0.645 CD4_TEM L2
ENSG00000136014 USP44 746589 sc-eQTL 7.64e-01 -0.0273 0.091 0.645 CD4_TEM L2
ENSG00000139343 SNRPF 439137 sc-eQTL 1.95e-01 -0.1 0.0771 0.645 CD4_TEM L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 7.39e-01 0.0306 0.0918 0.645 CD4_TEM L2
ENSG00000059758 CDK17 -102415 sc-eQTL 5.31e-01 0.0319 0.0508 0.645 CD8_CTL L2
ENSG00000111142 METAP2 824545 sc-eQTL 5.26e-01 -0.0558 0.0878 0.645 CD8_CTL L2
ENSG00000111144 LTA4H 254545 sc-eQTL 9.53e-01 0.00539 0.0918 0.645 CD8_CTL L2
ENSG00000111145 ELK3 103690 sc-eQTL 2.97e-01 0.0873 0.0834 0.645 CD8_CTL L2
ENSG00000136014 USP44 746589 sc-eQTL 5.96e-01 0.0494 0.0931 0.645 CD8_CTL L2
ENSG00000139343 SNRPF 439137 sc-eQTL 9.10e-01 -0.0087 0.0768 0.645 CD8_CTL L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 9.46e-01 0.0059 0.0862 0.645 CD8_CTL L2
ENSG00000059758 CDK17 -102415 sc-eQTL 7.86e-01 -0.0163 0.06 0.645 CD8_Naive L2
ENSG00000111142 METAP2 824545 sc-eQTL 2.19e-01 0.0981 0.0795 0.645 CD8_Naive L2
ENSG00000111144 LTA4H 254545 sc-eQTL 5.21e-01 0.0462 0.0718 0.645 CD8_Naive L2
ENSG00000111145 ELK3 103690 sc-eQTL 8.77e-01 0.0118 0.0761 0.645 CD8_Naive L2
ENSG00000136014 USP44 746589 sc-eQTL 3.89e-01 -0.0689 0.0797 0.645 CD8_Naive L2
ENSG00000139343 SNRPF 439137 sc-eQTL 8.55e-01 -0.0125 0.0684 0.645 CD8_Naive L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 6.52e-02 -0.15 0.0808 0.645 CD8_Naive L2
ENSG00000059758 CDK17 -102415 sc-eQTL 3.65e-01 0.061 0.0672 0.639 CD8_TCM L2
ENSG00000111142 METAP2 824545 sc-eQTL 7.86e-01 -0.0273 0.1 0.639 CD8_TCM L2
ENSG00000111144 LTA4H 254545 sc-eQTL 6.86e-01 -0.04 0.0989 0.639 CD8_TCM L2
ENSG00000111145 ELK3 103690 sc-eQTL 4.75e-01 -0.06 0.0837 0.639 CD8_TCM L2
ENSG00000136014 USP44 746589 sc-eQTL 5.76e-01 0.0508 0.0907 0.639 CD8_TCM L2
ENSG00000139343 SNRPF 439137 sc-eQTL 7.48e-01 0.0311 0.0965 0.639 CD8_TCM L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 4.92e-01 -0.0649 0.0944 0.639 CD8_TCM L2
ENSG00000059758 CDK17 -102415 sc-eQTL 4.14e-01 0.0663 0.081 0.655 CD8_TEM L2
ENSG00000111142 METAP2 824545 sc-eQTL 7.33e-01 0.0326 0.0952 0.655 CD8_TEM L2
ENSG00000111144 LTA4H 254545 sc-eQTL 6.19e-01 -0.0495 0.0993 0.655 CD8_TEM L2
ENSG00000111145 ELK3 103690 sc-eQTL 1.69e-01 -0.134 0.0972 0.655 CD8_TEM L2
ENSG00000136014 USP44 746589 sc-eQTL 1.54e-01 0.118 0.0827 0.655 CD8_TEM L2
ENSG00000139343 SNRPF 439137 sc-eQTL 9.35e-01 0.00746 0.0908 0.655 CD8_TEM L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 8.30e-02 -0.17 0.0978 0.655 CD8_TEM L2
ENSG00000059758 CDK17 -102415 sc-eQTL 1.81e-02 -0.129 0.0543 0.647 MAIT L2
ENSG00000074527 NTN4 506913 sc-eQTL 9.17e-01 -0.00774 0.0741 0.647 MAIT L2
ENSG00000111142 METAP2 824545 sc-eQTL 1.53e-01 0.133 0.0929 0.647 MAIT L2
ENSG00000111144 LTA4H 254545 sc-eQTL 9.62e-01 0.00409 0.085 0.647 MAIT L2
ENSG00000111145 ELK3 103690 sc-eQTL 6.56e-01 -0.0318 0.0713 0.647 MAIT L2
ENSG00000139343 SNRPF 439137 sc-eQTL 9.89e-01 -0.00112 0.0826 0.647 MAIT L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 5.09e-01 -0.0613 0.0927 0.647 MAIT L2
ENSG00000188596 CFAP54 -191506 sc-eQTL 6.97e-01 0.0358 0.0919 0.647 MAIT L2
ENSG00000059758 CDK17 -102415 sc-eQTL 5.98e-01 0.0298 0.0564 0.647 NK_CD56bright L2
ENSG00000111142 METAP2 824545 sc-eQTL 5.09e-01 0.0629 0.0952 0.647 NK_CD56bright L2
ENSG00000111144 LTA4H 254545 sc-eQTL 8.80e-01 -0.0127 0.0835 0.647 NK_CD56bright L2
ENSG00000111145 ELK3 103690 sc-eQTL 9.44e-01 0.00622 0.0886 0.647 NK_CD56bright L2
ENSG00000139343 SNRPF 439137 sc-eQTL 6.89e-01 -0.0371 0.0926 0.647 NK_CD56bright L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 6.46e-01 -0.043 0.0935 0.647 NK_CD56bright L2
ENSG00000059758 CDK17 -102415 sc-eQTL 3.05e-02 0.105 0.0482 0.647 NK_CD56dim L2
ENSG00000111142 METAP2 824545 sc-eQTL 7.51e-01 -0.0271 0.0853 0.647 NK_CD56dim L2
ENSG00000111144 LTA4H 254545 sc-eQTL 4.54e-01 -0.066 0.0879 0.647 NK_CD56dim L2
ENSG00000111145 ELK3 103690 sc-eQTL 5.12e-01 -0.0511 0.0778 0.647 NK_CD56dim L2
ENSG00000139343 SNRPF 439137 sc-eQTL 2.66e-01 -0.0825 0.0739 0.647 NK_CD56dim L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 5.36e-02 -0.164 0.0846 0.647 NK_CD56dim L2
ENSG00000059758 CDK17 -102415 sc-eQTL 5.61e-01 -0.0436 0.0749 0.648 NK_HLA L2
ENSG00000111142 METAP2 824545 sc-eQTL 2.40e-01 0.111 0.0941 0.648 NK_HLA L2
ENSG00000111144 LTA4H 254545 sc-eQTL 1.20e-01 -0.153 0.0977 0.648 NK_HLA L2
ENSG00000111145 ELK3 103690 sc-eQTL 2.63e-01 0.102 0.0909 0.648 NK_HLA L2
ENSG00000139343 SNRPF 439137 sc-eQTL 7.62e-01 0.0289 0.095 0.648 NK_HLA L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 7.09e-01 -0.0336 0.0899 0.648 NK_HLA L2
ENSG00000059758 CDK17 -102415 sc-eQTL 5.24e-01 0.0339 0.0531 0.647 NK_cytokine L2
ENSG00000111142 METAP2 824545 sc-eQTL 7.23e-01 0.0314 0.0883 0.647 NK_cytokine L2
ENSG00000111144 LTA4H 254545 sc-eQTL 6.56e-01 0.0401 0.0899 0.647 NK_cytokine L2
ENSG00000111145 ELK3 103690 sc-eQTL 3.39e-01 0.0824 0.0859 0.647 NK_cytokine L2
ENSG00000139343 SNRPF 439137 sc-eQTL 3.38e-01 -0.0699 0.0728 0.647 NK_cytokine L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 4.94e-02 -0.177 0.0893 0.647 NK_cytokine L2
ENSG00000059758 CDK17 -102415 sc-eQTL 1.92e-01 0.125 0.0951 0.644 PB L2
ENSG00000111142 METAP2 824545 sc-eQTL 5.15e-01 0.0731 0.112 0.644 PB L2
ENSG00000111144 LTA4H 254545 sc-eQTL 3.10e-01 -0.0859 0.0841 0.644 PB L2
ENSG00000111145 ELK3 103690 sc-eQTL 7.15e-01 0.0396 0.108 0.644 PB L2
ENSG00000136014 USP44 746589 sc-eQTL 1.60e-01 -0.141 0.0994 0.644 PB L2
ENSG00000139343 SNRPF 439137 sc-eQTL 4.57e-01 -0.0787 0.105 0.644 PB L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 7.16e-01 0.0458 0.126 0.644 PB L2
ENSG00000059758 CDK17 -102415 sc-eQTL 7.08e-01 -0.0225 0.0598 0.643 Pro_T L2
ENSG00000074527 NTN4 506913 sc-eQTL 7.74e-01 0.0193 0.0672 0.643 Pro_T L2
ENSG00000111142 METAP2 824545 sc-eQTL 6.39e-01 0.0373 0.0793 0.643 Pro_T L2
ENSG00000111144 LTA4H 254545 sc-eQTL 1.82e-01 -0.105 0.0787 0.643 Pro_T L2
ENSG00000111145 ELK3 103690 sc-eQTL 2.51e-01 -0.11 0.0953 0.643 Pro_T L2
ENSG00000139343 SNRPF 439137 sc-eQTL 8.40e-01 0.0122 0.0602 0.643 Pro_T L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 9.82e-01 0.00203 0.0875 0.643 Pro_T L2
ENSG00000188596 CFAP54 -191506 sc-eQTL 3.34e-01 -0.0683 0.0706 0.643 Pro_T L2
ENSG00000059758 CDK17 -102415 sc-eQTL 2.73e-01 -0.0717 0.0651 0.645 Treg L2
ENSG00000111142 METAP2 824545 sc-eQTL 9.90e-01 -0.00116 0.0889 0.645 Treg L2
ENSG00000111144 LTA4H 254545 sc-eQTL 5.93e-01 -0.0443 0.0827 0.645 Treg L2
ENSG00000111145 ELK3 103690 sc-eQTL 4.16e-01 -0.061 0.0749 0.645 Treg L2
ENSG00000136014 USP44 746589 sc-eQTL 2.20e-01 0.103 0.0839 0.645 Treg L2
ENSG00000139343 SNRPF 439137 sc-eQTL 5.08e-02 0.169 0.086 0.645 Treg L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 9.41e-01 0.00716 0.0969 0.645 Treg L2
ENSG00000059758 CDK17 -102415 sc-eQTL 9.37e-01 0.00622 0.0784 0.629 cDC L2
ENSG00000084110 HAL 301700 sc-eQTL 8.37e-01 -0.0168 0.0815 0.629 cDC L2
ENSG00000111142 METAP2 824545 sc-eQTL 6.52e-01 0.0444 0.0983 0.629 cDC L2
ENSG00000111144 LTA4H 254545 sc-eQTL 2.47e-01 0.0808 0.0696 0.629 cDC L2
ENSG00000111145 ELK3 103690 sc-eQTL 3.16e-01 0.0924 0.0919 0.629 cDC L2
ENSG00000139343 SNRPF 439137 sc-eQTL 5.37e-01 -0.0477 0.0771 0.629 cDC L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 8.34e-01 -0.0197 0.094 0.629 cDC L2
ENSG00000257715 AC007298.1 272742 sc-eQTL 9.59e-01 -0.00409 0.0793 0.629 cDC L2
ENSG00000059758 CDK17 -102415 sc-eQTL 1.66e-03 -0.219 0.0686 0.645 cMono_IL1B L2
ENSG00000084110 HAL 301700 sc-eQTL 2.43e-01 0.0895 0.0764 0.645 cMono_IL1B L2
ENSG00000111142 METAP2 824545 sc-eQTL 3.44e-01 0.0752 0.0793 0.645 cMono_IL1B L2
ENSG00000111144 LTA4H 254545 sc-eQTL 5.11e-01 -0.0544 0.0827 0.645 cMono_IL1B L2
ENSG00000111145 ELK3 103690 sc-eQTL 4.39e-01 -0.0494 0.0637 0.645 cMono_IL1B L2
ENSG00000139343 SNRPF 439137 sc-eQTL 5.39e-01 0.0404 0.0657 0.645 cMono_IL1B L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 8.27e-01 -0.0199 0.0906 0.645 cMono_IL1B L2
ENSG00000257715 AC007298.1 272742 sc-eQTL 2.10e-01 0.106 0.0842 0.645 cMono_IL1B L2
ENSG00000059758 CDK17 -102415 sc-eQTL 2.28e-01 -0.0951 0.0787 0.645 cMono_S100A L2
ENSG00000084110 HAL 301700 sc-eQTL 1.70e-01 0.122 0.0883 0.645 cMono_S100A L2
ENSG00000111142 METAP2 824545 sc-eQTL 9.38e-02 0.15 0.0891 0.645 cMono_S100A L2
ENSG00000111144 LTA4H 254545 sc-eQTL 4.98e-01 -0.06 0.0885 0.645 cMono_S100A L2
ENSG00000111145 ELK3 103690 sc-eQTL 5.18e-01 0.0467 0.0721 0.645 cMono_S100A L2
ENSG00000139343 SNRPF 439137 sc-eQTL 3.22e-02 -0.152 0.0705 0.645 cMono_S100A L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 2.09e-01 -0.121 0.0959 0.645 cMono_S100A L2
ENSG00000257715 AC007298.1 272742 sc-eQTL 6.74e-01 -0.0381 0.0906 0.645 cMono_S100A L2
ENSG00000059758 CDK17 -102415 sc-eQTL 8.07e-01 0.0185 0.0758 0.645 gdT L2
ENSG00000074527 NTN4 506913 sc-eQTL 6.43e-01 -0.0404 0.0869 0.645 gdT L2
ENSG00000111142 METAP2 824545 sc-eQTL 7.83e-01 -0.03 0.109 0.645 gdT L2
ENSG00000111144 LTA4H 254545 sc-eQTL 2.71e-01 0.125 0.113 0.645 gdT L2
ENSG00000111145 ELK3 103690 sc-eQTL 2.34e-01 0.125 0.104 0.645 gdT L2
ENSG00000139343 SNRPF 439137 sc-eQTL 2.69e-02 0.222 0.0995 0.645 gdT L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 2.67e-01 -0.124 0.111 0.645 gdT L2
ENSG00000188596 CFAP54 -191506 sc-eQTL 6.83e-01 0.04 0.0979 0.645 gdT L2
ENSG00000059758 CDK17 -102415 sc-eQTL 9.17e-01 0.00927 0.089 0.64 intMono L2
ENSG00000084110 HAL 301700 sc-eQTL 3.90e-01 0.0773 0.0898 0.64 intMono L2
ENSG00000111142 METAP2 824545 sc-eQTL 7.75e-01 -0.0292 0.102 0.64 intMono L2
ENSG00000111144 LTA4H 254545 sc-eQTL 5.00e-01 0.0624 0.0922 0.64 intMono L2
ENSG00000111145 ELK3 103690 sc-eQTL 7.07e-01 -0.031 0.0822 0.64 intMono L2
ENSG00000139343 SNRPF 439137 sc-eQTL 6.12e-02 -0.164 0.0871 0.64 intMono L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 8.60e-01 -0.0161 0.0913 0.64 intMono L2
ENSG00000257715 AC007298.1 272742 sc-eQTL 3.95e-01 0.0782 0.0917 0.64 intMono L2
ENSG00000059758 CDK17 -102415 sc-eQTL 3.37e-01 0.0689 0.0716 0.643 ncMono L2
ENSG00000084110 HAL 301700 sc-eQTL 6.25e-01 -0.0392 0.08 0.643 ncMono L2
ENSG00000111142 METAP2 824545 sc-eQTL 8.44e-01 0.0191 0.0968 0.643 ncMono L2
ENSG00000111144 LTA4H 254545 sc-eQTL 7.16e-01 0.0325 0.0893 0.643 ncMono L2
ENSG00000111145 ELK3 103690 sc-eQTL 9.30e-01 -0.00678 0.0767 0.643 ncMono L2
ENSG00000139343 SNRPF 439137 sc-eQTL 8.41e-02 -0.135 0.0777 0.643 ncMono L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 7.92e-01 0.0219 0.0831 0.643 ncMono L2
ENSG00000257715 AC007298.1 272742 sc-eQTL 6.38e-01 0.0446 0.0948 0.643 ncMono L2
ENSG00000059758 CDK17 -102415 sc-eQTL 9.73e-01 0.00315 0.0937 0.633 pDC L2
ENSG00000084110 HAL 301700 sc-eQTL 2.84e-03 0.233 0.0769 0.633 pDC L2
ENSG00000111142 METAP2 824545 sc-eQTL 6.95e-01 0.0419 0.107 0.633 pDC L2
ENSG00000111144 LTA4H 254545 sc-eQTL 5.56e-01 -0.0522 0.0885 0.633 pDC L2
ENSG00000111145 ELK3 103690 sc-eQTL 8.78e-01 0.0167 0.108 0.633 pDC L2
ENSG00000139343 SNRPF 439137 sc-eQTL 8.62e-01 0.0165 0.0945 0.633 pDC L2
ENSG00000139350 NEDD1 -609158 sc-eQTL 6.94e-02 0.189 0.103 0.633 pDC L2
ENSG00000257715 AC007298.1 272742 sc-eQTL 3.46e-01 0.0842 0.0892 0.633 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -102415 sc-eQTL 6.65e-01 0.0266 0.0614 0.645 B_Memory LOneK1K
ENSG00000111142 METAP2 824545 sc-eQTL 7.08e-01 0.032 0.0854 0.645 B_Memory LOneK1K
ENSG00000111144 LTA4H 254545 sc-eQTL 8.58e-01 0.0114 0.0638 0.645 B_Memory LOneK1K
ENSG00000111145 ELK3 103690 sc-eQTL 9.79e-02 -0.12 0.0724 0.645 B_Memory LOneK1K
ENSG00000136014 USP44 746589 sc-eQTL 9.59e-01 -0.0047 0.0908 0.645 B_Memory LOneK1K
ENSG00000139343 SNRPF 439137 sc-eQTL 2.53e-01 0.0806 0.0704 0.645 B_Memory LOneK1K
ENSG00000139350 NEDD1 -609158 sc-eQTL 4.62e-02 -0.184 0.0918 0.645 B_Memory LOneK1K
ENSG00000059758 CDK17 -102415 sc-eQTL 1.71e-01 -0.0732 0.0533 0.645 B_Naive LOneK1K
ENSG00000111142 METAP2 824545 sc-eQTL 9.79e-01 -0.00192 0.0725 0.645 B_Naive LOneK1K
ENSG00000111144 LTA4H 254545 sc-eQTL 8.69e-01 0.00995 0.0601 0.645 B_Naive LOneK1K
ENSG00000111145 ELK3 103690 sc-eQTL 9.72e-02 -0.113 0.068 0.645 B_Naive LOneK1K
ENSG00000136014 USP44 746589 sc-eQTL 8.05e-01 0.0206 0.0836 0.645 B_Naive LOneK1K
ENSG00000139343 SNRPF 439137 sc-eQTL 2.43e-01 0.0804 0.0687 0.645 B_Naive LOneK1K
ENSG00000139350 NEDD1 -609158 sc-eQTL 4.28e-01 0.0723 0.091 0.645 B_Naive LOneK1K
ENSG00000059758 CDK17 -102415 sc-eQTL 2.85e-03 -0.19 0.0629 0.645 CD14_Mono LOneK1K
ENSG00000084110 HAL 301700 sc-eQTL 2.61e-01 0.0875 0.0776 0.645 CD14_Mono LOneK1K
ENSG00000111142 METAP2 824545 sc-eQTL 1.65e-01 0.102 0.0729 0.645 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 254545 sc-eQTL 8.90e-01 -0.0118 0.0854 0.645 CD14_Mono LOneK1K
ENSG00000111145 ELK3 103690 sc-eQTL 6.94e-01 -0.0243 0.0617 0.645 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 439137 sc-eQTL 4.66e-01 -0.0434 0.0595 0.645 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -609158 sc-eQTL 3.19e-01 -0.0931 0.0932 0.645 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 272742 sc-eQTL 5.14e-01 0.0565 0.0864 0.645 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -102415 sc-eQTL 6.89e-01 0.026 0.0649 0.647 CD16_Mono LOneK1K
ENSG00000084110 HAL 301700 sc-eQTL 7.56e-01 0.0239 0.0767 0.647 CD16_Mono LOneK1K
ENSG00000111142 METAP2 824545 sc-eQTL 8.51e-01 0.0163 0.087 0.647 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 254545 sc-eQTL 9.41e-01 0.00634 0.0851 0.647 CD16_Mono LOneK1K
ENSG00000111145 ELK3 103690 sc-eQTL 3.00e-01 -0.0652 0.0628 0.647 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 439137 sc-eQTL 1.76e-01 -0.0878 0.0646 0.647 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -609158 sc-eQTL 6.01e-01 -0.0435 0.0832 0.647 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 272742 sc-eQTL 8.40e-01 0.0178 0.0881 0.647 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -102415 sc-eQTL 1.77e-01 0.0614 0.0453 0.647 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 824545 sc-eQTL 9.58e-01 -0.00364 0.0692 0.647 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 254545 sc-eQTL 9.67e-01 -0.00327 0.0791 0.647 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 103690 sc-eQTL 6.99e-01 0.0281 0.0724 0.647 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 439137 sc-eQTL 2.11e-01 -0.0775 0.0617 0.647 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -609158 sc-eQTL 3.26e-02 -0.164 0.0764 0.647 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111144 LTA4H 254545 eQTL 0.0209 -0.049 0.0212 0.0 0.0 0.344
ENSG00000111145 ELK3 103690 eQTL 3.9e-07 -0.0905 0.0177 0.0 0.0 0.344

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 ELK3 103690 9.98e-06 1.18e-05 1.36e-06 6.77e-06 2.45e-06 5.66e-06 1.09e-05 2.12e-06 9.83e-06 5.16e-06 1.35e-05 6.06e-06 1.55e-05 3.79e-06 3.15e-06 6.38e-06 4.93e-06 8.09e-06 2.68e-06 2.82e-06 5.02e-06 1e-05 8.1e-06 3.21e-06 1.38e-05 3.68e-06 5.16e-06 4.18e-06 9.12e-06 7.93e-06 5.65e-06 9.88e-07 1.19e-06 3.07e-06 5.39e-06 2.31e-06 1.75e-06 1.89e-06 2.11e-06 9.82e-07 1.02e-06 1.29e-05 1.61e-06 1.58e-07 7.64e-07 1.57e-06 1.75e-06 7.15e-07 4.54e-07
ENSG00000188596 \N -191510 4.33e-06 5.05e-06 7.63e-07 3.09e-06 1.33e-06 1.56e-06 3.59e-06 9.79e-07 3.65e-06 2.01e-06 5.17e-06 3.32e-06 7.25e-06 1.84e-06 1.21e-06 2.42e-06 2.02e-06 3.26e-06 1.45e-06 1.04e-06 2.69e-06 4.49e-06 3.34e-06 1.63e-06 4.78e-06 1.24e-06 2.41e-06 1.73e-06 3.88e-06 3.61e-06 1.96e-06 5.6e-07 8.13e-07 1.85e-06 2e-06 9.44e-07 9.16e-07 4.24e-07 1.04e-06 5.04e-07 2.79e-07 5.26e-06 4.73e-07 1.86e-07 3.65e-07 3.52e-07 1.13e-06 6.6e-07 3.73e-07