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Genes within 1Mb (chr12:96257481:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -142999 sc-eQTL 5.22e-01 0.0542 0.0847 0.921 B L1
ENSG00000111142 METAP2 783961 sc-eQTL 8.33e-01 0.0254 0.12 0.921 B L1
ENSG00000111144 LTA4H 213961 sc-eQTL 2.87e-01 0.112 0.105 0.921 B L1
ENSG00000111145 ELK3 63106 sc-eQTL 3.13e-03 -0.328 0.11 0.921 B L1
ENSG00000136014 USP44 706005 sc-eQTL 6.80e-01 0.0571 0.138 0.921 B L1
ENSG00000139343 SNRPF 398553 sc-eQTL 5.27e-02 0.197 0.101 0.921 B L1
ENSG00000139350 NEDD1 -649742 sc-eQTL 9.61e-01 0.00731 0.149 0.921 B L1
ENSG00000059758 CDK17 -142999 sc-eQTL 6.57e-02 0.127 0.0688 0.921 CD4T L1
ENSG00000111142 METAP2 783961 sc-eQTL 5.86e-01 -0.0527 0.0967 0.921 CD4T L1
ENSG00000111144 LTA4H 213961 sc-eQTL 7.91e-01 0.0253 0.0952 0.921 CD4T L1
ENSG00000111145 ELK3 63106 sc-eQTL 7.08e-01 -0.0387 0.103 0.921 CD4T L1
ENSG00000136014 USP44 706005 sc-eQTL 5.13e-01 -0.0964 0.147 0.921 CD4T L1
ENSG00000139343 SNRPF 398553 sc-eQTL 8.95e-01 0.0119 0.0902 0.921 CD4T L1
ENSG00000139350 NEDD1 -649742 sc-eQTL 4.81e-01 -0.0783 0.111 0.921 CD4T L1
ENSG00000059758 CDK17 -142999 sc-eQTL 8.58e-01 0.0127 0.0708 0.921 CD8T L1
ENSG00000111142 METAP2 783961 sc-eQTL 7.41e-01 -0.0379 0.114 0.921 CD8T L1
ENSG00000111144 LTA4H 213961 sc-eQTL 7.97e-01 -0.0195 0.076 0.921 CD8T L1
ENSG00000111145 ELK3 63106 sc-eQTL 6.19e-01 -0.057 0.114 0.921 CD8T L1
ENSG00000136014 USP44 706005 sc-eQTL 5.43e-01 0.0792 0.13 0.921 CD8T L1
ENSG00000139343 SNRPF 398553 sc-eQTL 3.67e-01 0.0846 0.0936 0.921 CD8T L1
ENSG00000139350 NEDD1 -649742 sc-eQTL 1.31e-01 -0.188 0.124 0.921 CD8T L1
ENSG00000059758 CDK17 -142999 sc-eQTL 8.00e-01 0.0331 0.13 0.919 DC L1
ENSG00000084110 HAL 261116 sc-eQTL 6.00e-01 -0.0778 0.148 0.919 DC L1
ENSG00000111142 METAP2 783961 sc-eQTL 6.21e-01 -0.0809 0.163 0.919 DC L1
ENSG00000111144 LTA4H 213961 sc-eQTL 5.31e-01 0.076 0.121 0.919 DC L1
ENSG00000111145 ELK3 63106 sc-eQTL 2.73e-01 0.163 0.148 0.919 DC L1
ENSG00000139343 SNRPF 398553 sc-eQTL 9.55e-02 0.205 0.123 0.919 DC L1
ENSG00000139350 NEDD1 -649742 sc-eQTL 5.58e-01 0.0931 0.158 0.919 DC L1
ENSG00000257715 AC007298.1 232158 sc-eQTL 3.15e-01 -0.144 0.143 0.919 DC L1
ENSG00000059758 CDK17 -142999 sc-eQTL 8.36e-02 -0.182 0.105 0.921 Mono L1
ENSG00000084110 HAL 261116 sc-eQTL 4.98e-02 0.26 0.132 0.921 Mono L1
ENSG00000111142 METAP2 783961 sc-eQTL 9.49e-01 -0.00729 0.115 0.921 Mono L1
ENSG00000111144 LTA4H 213961 sc-eQTL 1.94e-01 0.195 0.149 0.921 Mono L1
ENSG00000111145 ELK3 63106 sc-eQTL 5.32e-01 -0.0629 0.101 0.921 Mono L1
ENSG00000139343 SNRPF 398553 sc-eQTL 7.22e-01 -0.0339 0.0949 0.921 Mono L1
ENSG00000139350 NEDD1 -649742 sc-eQTL 9.37e-01 -0.0116 0.146 0.921 Mono L1
ENSG00000257715 AC007298.1 232158 sc-eQTL 3.68e-01 0.127 0.141 0.921 Mono L1
ENSG00000059758 CDK17 -142999 sc-eQTL 7.68e-01 0.0234 0.0792 0.923 NK L1
ENSG00000111142 METAP2 783961 sc-eQTL 9.09e-01 -0.0135 0.117 0.923 NK L1
ENSG00000111144 LTA4H 213961 sc-eQTL 6.05e-01 -0.0697 0.134 0.923 NK L1
ENSG00000111145 ELK3 63106 sc-eQTL 1.59e-01 0.179 0.127 0.923 NK L1
ENSG00000139343 SNRPF 398553 sc-eQTL 7.53e-01 -0.0333 0.106 0.923 NK L1
ENSG00000139350 NEDD1 -649742 sc-eQTL 6.73e-01 0.0565 0.134 0.923 NK L1
ENSG00000059758 CDK17 -142999 sc-eQTL 7.19e-01 0.0239 0.0665 0.921 Other_T L1
ENSG00000074527 NTN4 466329 sc-eQTL 6.05e-01 0.0636 0.123 0.921 Other_T L1
ENSG00000111142 METAP2 783961 sc-eQTL 6.91e-01 0.0505 0.127 0.921 Other_T L1
ENSG00000111144 LTA4H 213961 sc-eQTL 8.06e-02 -0.242 0.138 0.921 Other_T L1
ENSG00000111145 ELK3 63106 sc-eQTL 9.82e-01 -0.00241 0.108 0.921 Other_T L1
ENSG00000139343 SNRPF 398553 sc-eQTL 6.57e-01 -0.0448 0.101 0.921 Other_T L1
ENSG00000139350 NEDD1 -649742 sc-eQTL 6.04e-01 0.0797 0.153 0.921 Other_T L1
ENSG00000188596 CFAP54 -232090 sc-eQTL 5.72e-01 0.0899 0.159 0.921 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -142999 sc-eQTL 2.60e-01 -0.176 0.156 0.923 B_Activated L2
ENSG00000111142 METAP2 783961 sc-eQTL 4.88e-01 -0.137 0.197 0.923 B_Activated L2
ENSG00000111144 LTA4H 213961 sc-eQTL 3.95e-01 0.151 0.177 0.923 B_Activated L2
ENSG00000111145 ELK3 63106 sc-eQTL 7.18e-01 -0.0679 0.188 0.923 B_Activated L2
ENSG00000136014 USP44 706005 sc-eQTL 4.71e-01 -0.104 0.144 0.923 B_Activated L2
ENSG00000139343 SNRPF 398553 sc-eQTL 3.41e-01 -0.168 0.176 0.923 B_Activated L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 1.27e-01 0.282 0.184 0.923 B_Activated L2
ENSG00000059758 CDK17 -142999 sc-eQTL 2.65e-01 0.145 0.13 0.921 B_Intermediate L2
ENSG00000111142 METAP2 783961 sc-eQTL 7.07e-01 0.0562 0.149 0.921 B_Intermediate L2
ENSG00000111144 LTA4H 213961 sc-eQTL 8.69e-01 0.0208 0.126 0.921 B_Intermediate L2
ENSG00000111145 ELK3 63106 sc-eQTL 9.65e-01 -0.00625 0.142 0.921 B_Intermediate L2
ENSG00000136014 USP44 706005 sc-eQTL 9.33e-01 0.0142 0.168 0.921 B_Intermediate L2
ENSG00000139343 SNRPF 398553 sc-eQTL 1.38e-01 0.21 0.141 0.921 B_Intermediate L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 7.39e-01 0.0553 0.166 0.921 B_Intermediate L2
ENSG00000059758 CDK17 -142999 sc-eQTL 3.98e-01 0.106 0.125 0.92 B_Memory L2
ENSG00000111142 METAP2 783961 sc-eQTL 5.20e-01 -0.105 0.163 0.92 B_Memory L2
ENSG00000111144 LTA4H 213961 sc-eQTL 1.45e-01 0.211 0.144 0.92 B_Memory L2
ENSG00000111145 ELK3 63106 sc-eQTL 1.53e-01 -0.203 0.142 0.92 B_Memory L2
ENSG00000136014 USP44 706005 sc-eQTL 2.46e-01 -0.181 0.156 0.92 B_Memory L2
ENSG00000139343 SNRPF 398553 sc-eQTL 3.76e-01 0.133 0.15 0.92 B_Memory L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 3.54e-03 -0.482 0.163 0.92 B_Memory L2
ENSG00000059758 CDK17 -142999 sc-eQTL 8.44e-01 -0.0206 0.104 0.921 B_Naive1 L2
ENSG00000111142 METAP2 783961 sc-eQTL 9.90e-01 -0.00163 0.135 0.921 B_Naive1 L2
ENSG00000111144 LTA4H 213961 sc-eQTL 1.02e-01 0.179 0.109 0.921 B_Naive1 L2
ENSG00000111145 ELK3 63106 sc-eQTL 1.76e-02 -0.305 0.128 0.921 B_Naive1 L2
ENSG00000136014 USP44 706005 sc-eQTL 3.32e-01 -0.158 0.162 0.921 B_Naive1 L2
ENSG00000139343 SNRPF 398553 sc-eQTL 1.03e-01 0.204 0.125 0.921 B_Naive1 L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 8.13e-01 0.0383 0.161 0.921 B_Naive1 L2
ENSG00000059758 CDK17 -142999 sc-eQTL 8.29e-01 0.0285 0.132 0.921 B_Naive2 L2
ENSG00000111142 METAP2 783961 sc-eQTL 6.37e-01 -0.0751 0.159 0.921 B_Naive2 L2
ENSG00000111144 LTA4H 213961 sc-eQTL 9.60e-01 0.00619 0.125 0.921 B_Naive2 L2
ENSG00000111145 ELK3 63106 sc-eQTL 1.81e-01 -0.196 0.146 0.921 B_Naive2 L2
ENSG00000136014 USP44 706005 sc-eQTL 8.12e-01 0.0379 0.159 0.921 B_Naive2 L2
ENSG00000139343 SNRPF 398553 sc-eQTL 2.61e-01 0.164 0.146 0.921 B_Naive2 L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 1.46e-01 0.252 0.173 0.921 B_Naive2 L2
ENSG00000059758 CDK17 -142999 sc-eQTL 7.54e-01 0.0376 0.12 0.92 CD4_CTL L2
ENSG00000111142 METAP2 783961 sc-eQTL 4.02e-01 -0.144 0.171 0.92 CD4_CTL L2
ENSG00000111144 LTA4H 213961 sc-eQTL 4.35e-03 -0.478 0.166 0.92 CD4_CTL L2
ENSG00000111145 ELK3 63106 sc-eQTL 5.93e-01 -0.0916 0.171 0.92 CD4_CTL L2
ENSG00000136014 USP44 706005 sc-eQTL 7.46e-02 0.243 0.136 0.92 CD4_CTL L2
ENSG00000139343 SNRPF 398553 sc-eQTL 7.63e-01 -0.0449 0.149 0.92 CD4_CTL L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 2.97e-01 0.179 0.172 0.92 CD4_CTL L2
ENSG00000059758 CDK17 -142999 sc-eQTL 9.07e-02 0.129 0.0757 0.921 CD4_Naive L2
ENSG00000111142 METAP2 783961 sc-eQTL 3.88e-01 -0.0949 0.11 0.921 CD4_Naive L2
ENSG00000111144 LTA4H 213961 sc-eQTL 7.67e-01 0.0327 0.11 0.921 CD4_Naive L2
ENSG00000111145 ELK3 63106 sc-eQTL 5.08e-01 0.073 0.11 0.921 CD4_Naive L2
ENSG00000136014 USP44 706005 sc-eQTL 5.34e-01 -0.0962 0.154 0.921 CD4_Naive L2
ENSG00000139343 SNRPF 398553 sc-eQTL 8.87e-01 0.014 0.098 0.921 CD4_Naive L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 3.11e-01 -0.122 0.12 0.921 CD4_Naive L2
ENSG00000059758 CDK17 -142999 sc-eQTL 2.14e-01 0.0924 0.074 0.921 CD4_TCM L2
ENSG00000111142 METAP2 783961 sc-eQTL 8.20e-01 -0.0288 0.127 0.921 CD4_TCM L2
ENSG00000111144 LTA4H 213961 sc-eQTL 7.95e-01 0.0328 0.126 0.921 CD4_TCM L2
ENSG00000111145 ELK3 63106 sc-eQTL 1.08e-01 -0.199 0.123 0.921 CD4_TCM L2
ENSG00000136014 USP44 706005 sc-eQTL 7.67e-01 -0.0508 0.171 0.921 CD4_TCM L2
ENSG00000139343 SNRPF 398553 sc-eQTL 6.46e-01 0.0467 0.102 0.921 CD4_TCM L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 2.82e-01 0.15 0.139 0.921 CD4_TCM L2
ENSG00000059758 CDK17 -142999 sc-eQTL 8.99e-01 0.0116 0.0919 0.921 CD4_TEM L2
ENSG00000111142 METAP2 783961 sc-eQTL 1.75e-01 -0.208 0.153 0.921 CD4_TEM L2
ENSG00000111144 LTA4H 213961 sc-eQTL 5.28e-01 0.0896 0.142 0.921 CD4_TEM L2
ENSG00000111145 ELK3 63106 sc-eQTL 8.08e-01 0.032 0.132 0.921 CD4_TEM L2
ENSG00000136014 USP44 706005 sc-eQTL 5.71e-01 0.092 0.162 0.921 CD4_TEM L2
ENSG00000139343 SNRPF 398553 sc-eQTL 9.73e-01 0.00473 0.138 0.921 CD4_TEM L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 2.75e-01 -0.179 0.163 0.921 CD4_TEM L2
ENSG00000059758 CDK17 -142999 sc-eQTL 4.45e-01 -0.0663 0.0867 0.921 CD8_CTL L2
ENSG00000111142 METAP2 783961 sc-eQTL 1.30e-01 -0.227 0.149 0.921 CD8_CTL L2
ENSG00000111144 LTA4H 213961 sc-eQTL 1.68e-01 -0.216 0.156 0.921 CD8_CTL L2
ENSG00000111145 ELK3 63106 sc-eQTL 5.28e-01 -0.0901 0.143 0.921 CD8_CTL L2
ENSG00000136014 USP44 706005 sc-eQTL 2.74e-01 0.174 0.159 0.921 CD8_CTL L2
ENSG00000139343 SNRPF 398553 sc-eQTL 9.58e-01 -0.00698 0.131 0.921 CD8_CTL L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 8.28e-01 -0.0321 0.147 0.921 CD8_CTL L2
ENSG00000059758 CDK17 -142999 sc-eQTL 1.42e-01 0.156 0.106 0.921 CD8_Naive L2
ENSG00000111142 METAP2 783961 sc-eQTL 6.64e-01 0.0615 0.141 0.921 CD8_Naive L2
ENSG00000111144 LTA4H 213961 sc-eQTL 2.91e-01 0.135 0.127 0.921 CD8_Naive L2
ENSG00000111145 ELK3 63106 sc-eQTL 9.13e-01 -0.0147 0.135 0.921 CD8_Naive L2
ENSG00000136014 USP44 706005 sc-eQTL 8.28e-01 0.0307 0.142 0.921 CD8_Naive L2
ENSG00000139343 SNRPF 398553 sc-eQTL 4.58e-01 0.09 0.121 0.921 CD8_Naive L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 5.50e-01 -0.0862 0.144 0.921 CD8_Naive L2
ENSG00000059758 CDK17 -142999 sc-eQTL 8.96e-02 0.192 0.112 0.914 CD8_TCM L2
ENSG00000111142 METAP2 783961 sc-eQTL 6.26e-02 -0.314 0.168 0.914 CD8_TCM L2
ENSG00000111144 LTA4H 213961 sc-eQTL 7.11e-01 0.0618 0.167 0.914 CD8_TCM L2
ENSG00000111145 ELK3 63106 sc-eQTL 1.13e-01 0.223 0.14 0.914 CD8_TCM L2
ENSG00000136014 USP44 706005 sc-eQTL 6.42e-01 0.0711 0.153 0.914 CD8_TCM L2
ENSG00000139343 SNRPF 398553 sc-eQTL 3.07e-01 -0.166 0.162 0.914 CD8_TCM L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 1.55e-02 -0.383 0.157 0.914 CD8_TCM L2
ENSG00000059758 CDK17 -142999 sc-eQTL 3.18e-01 -0.142 0.142 0.925 CD8_TEM L2
ENSG00000111142 METAP2 783961 sc-eQTL 1.25e-01 -0.256 0.166 0.925 CD8_TEM L2
ENSG00000111144 LTA4H 213961 sc-eQTL 6.52e-01 0.0787 0.174 0.925 CD8_TEM L2
ENSG00000111145 ELK3 63106 sc-eQTL 2.52e-01 -0.196 0.171 0.925 CD8_TEM L2
ENSG00000136014 USP44 706005 sc-eQTL 1.75e-01 0.198 0.145 0.925 CD8_TEM L2
ENSG00000139343 SNRPF 398553 sc-eQTL 5.78e-01 -0.0886 0.159 0.925 CD8_TEM L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 5.36e-01 -0.107 0.173 0.925 CD8_TEM L2
ENSG00000059758 CDK17 -142999 sc-eQTL 6.80e-01 -0.0398 0.0963 0.922 MAIT L2
ENSG00000074527 NTN4 466329 sc-eQTL 6.40e-01 0.0608 0.13 0.922 MAIT L2
ENSG00000111142 METAP2 783961 sc-eQTL 4.92e-01 0.112 0.163 0.922 MAIT L2
ENSG00000111144 LTA4H 213961 sc-eQTL 3.08e-02 -0.32 0.147 0.922 MAIT L2
ENSG00000111145 ELK3 63106 sc-eQTL 9.71e-01 -0.00451 0.125 0.922 MAIT L2
ENSG00000139343 SNRPF 398553 sc-eQTL 5.30e-01 0.0909 0.145 0.922 MAIT L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 3.29e-01 -0.159 0.162 0.922 MAIT L2
ENSG00000188596 CFAP54 -232090 sc-eQTL 8.89e-01 0.0226 0.161 0.922 MAIT L2
ENSG00000059758 CDK17 -142999 sc-eQTL 6.42e-01 -0.0466 0.1 0.92 NK_CD56bright L2
ENSG00000111142 METAP2 783961 sc-eQTL 8.96e-02 0.287 0.168 0.92 NK_CD56bright L2
ENSG00000111144 LTA4H 213961 sc-eQTL 3.11e-01 0.15 0.148 0.92 NK_CD56bright L2
ENSG00000111145 ELK3 63106 sc-eQTL 8.84e-02 0.268 0.156 0.92 NK_CD56bright L2
ENSG00000139343 SNRPF 398553 sc-eQTL 5.17e-02 0.319 0.163 0.92 NK_CD56bright L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 1.08e-01 0.266 0.165 0.92 NK_CD56bright L2
ENSG00000059758 CDK17 -142999 sc-eQTL 4.99e-01 0.0576 0.0851 0.922 NK_CD56dim L2
ENSG00000111142 METAP2 783961 sc-eQTL 2.50e-01 -0.172 0.149 0.922 NK_CD56dim L2
ENSG00000111144 LTA4H 213961 sc-eQTL 5.91e-01 -0.0826 0.154 0.922 NK_CD56dim L2
ENSG00000111145 ELK3 63106 sc-eQTL 1.80e-01 0.182 0.136 0.922 NK_CD56dim L2
ENSG00000139343 SNRPF 398553 sc-eQTL 2.19e-01 -0.159 0.129 0.922 NK_CD56dim L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 8.76e-01 0.0232 0.149 0.922 NK_CD56dim L2
ENSG00000059758 CDK17 -142999 sc-eQTL 6.57e-01 -0.0579 0.13 0.918 NK_HLA L2
ENSG00000111142 METAP2 783961 sc-eQTL 1.53e-01 0.234 0.163 0.918 NK_HLA L2
ENSG00000111144 LTA4H 213961 sc-eQTL 2.48e-01 -0.197 0.17 0.918 NK_HLA L2
ENSG00000111145 ELK3 63106 sc-eQTL 7.96e-01 -0.0411 0.158 0.918 NK_HLA L2
ENSG00000139343 SNRPF 398553 sc-eQTL 1.22e-01 0.255 0.164 0.918 NK_HLA L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 8.06e-01 0.0385 0.156 0.918 NK_HLA L2
ENSG00000059758 CDK17 -142999 sc-eQTL 4.57e-01 0.0696 0.0934 0.922 NK_cytokine L2
ENSG00000111142 METAP2 783961 sc-eQTL 8.34e-01 -0.0325 0.155 0.922 NK_cytokine L2
ENSG00000111144 LTA4H 213961 sc-eQTL 9.26e-02 -0.265 0.157 0.922 NK_cytokine L2
ENSG00000111145 ELK3 63106 sc-eQTL 4.81e-01 0.107 0.151 0.922 NK_cytokine L2
ENSG00000139343 SNRPF 398553 sc-eQTL 9.49e-01 0.00813 0.128 0.922 NK_cytokine L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 6.83e-01 -0.0647 0.158 0.922 NK_cytokine L2
ENSG00000059758 CDK17 -142999 sc-eQTL 2.88e-01 0.198 0.185 0.926 PB L2
ENSG00000111142 METAP2 783961 sc-eQTL 7.66e-01 -0.0648 0.218 0.926 PB L2
ENSG00000111144 LTA4H 213961 sc-eQTL 8.24e-01 -0.0365 0.164 0.926 PB L2
ENSG00000111145 ELK3 63106 sc-eQTL 1.30e-01 -0.318 0.208 0.926 PB L2
ENSG00000136014 USP44 706005 sc-eQTL 2.28e-01 0.235 0.194 0.926 PB L2
ENSG00000139343 SNRPF 398553 sc-eQTL 4.37e-01 0.16 0.205 0.926 PB L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 8.96e-01 0.0321 0.244 0.926 PB L2
ENSG00000059758 CDK17 -142999 sc-eQTL 3.21e-01 0.103 0.103 0.92 Pro_T L2
ENSG00000074527 NTN4 466329 sc-eQTL 1.47e-01 0.168 0.116 0.92 Pro_T L2
ENSG00000111142 METAP2 783961 sc-eQTL 2.82e-01 -0.148 0.137 0.92 Pro_T L2
ENSG00000111144 LTA4H 213961 sc-eQTL 1.23e-01 -0.21 0.136 0.92 Pro_T L2
ENSG00000111145 ELK3 63106 sc-eQTL 7.94e-02 -0.289 0.164 0.92 Pro_T L2
ENSG00000139343 SNRPF 398553 sc-eQTL 6.91e-01 -0.0414 0.104 0.92 Pro_T L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 9.98e-01 -0.000309 0.151 0.92 Pro_T L2
ENSG00000188596 CFAP54 -232090 sc-eQTL 6.49e-01 0.0558 0.122 0.92 Pro_T L2
ENSG00000059758 CDK17 -142999 sc-eQTL 5.00e-01 -0.0774 0.114 0.921 Treg L2
ENSG00000111142 METAP2 783961 sc-eQTL 1.61e-01 0.218 0.155 0.921 Treg L2
ENSG00000111144 LTA4H 213961 sc-eQTL 1.77e-01 -0.196 0.145 0.921 Treg L2
ENSG00000111145 ELK3 63106 sc-eQTL 9.19e-01 0.0134 0.131 0.921 Treg L2
ENSG00000136014 USP44 706005 sc-eQTL 9.80e-01 0.00365 0.148 0.921 Treg L2
ENSG00000139343 SNRPF 398553 sc-eQTL 9.39e-01 0.0116 0.152 0.921 Treg L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 7.36e-01 -0.0574 0.17 0.921 Treg L2
ENSG00000059758 CDK17 -142999 sc-eQTL 5.76e-01 0.0767 0.137 0.917 cDC L2
ENSG00000084110 HAL 261116 sc-eQTL 3.09e-02 -0.306 0.141 0.917 cDC L2
ENSG00000111142 METAP2 783961 sc-eQTL 5.85e-01 -0.0942 0.172 0.917 cDC L2
ENSG00000111144 LTA4H 213961 sc-eQTL 2.54e-01 0.139 0.122 0.917 cDC L2
ENSG00000111145 ELK3 63106 sc-eQTL 9.07e-01 -0.0188 0.161 0.917 cDC L2
ENSG00000139343 SNRPF 398553 sc-eQTL 7.67e-01 0.04 0.135 0.917 cDC L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 4.44e-01 -0.126 0.164 0.917 cDC L2
ENSG00000257715 AC007298.1 232158 sc-eQTL 8.17e-01 -0.0321 0.139 0.917 cDC L2
ENSG00000059758 CDK17 -142999 sc-eQTL 6.34e-02 -0.225 0.12 0.921 cMono_IL1B L2
ENSG00000084110 HAL 261116 sc-eQTL 1.90e-01 0.173 0.132 0.921 cMono_IL1B L2
ENSG00000111142 METAP2 783961 sc-eQTL 7.59e-01 0.0422 0.137 0.921 cMono_IL1B L2
ENSG00000111144 LTA4H 213961 sc-eQTL 2.89e-01 0.151 0.143 0.921 cMono_IL1B L2
ENSG00000111145 ELK3 63106 sc-eQTL 4.77e-01 -0.0784 0.11 0.921 cMono_IL1B L2
ENSG00000139343 SNRPF 398553 sc-eQTL 9.66e-01 -0.00485 0.114 0.921 cMono_IL1B L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 5.44e-01 -0.0951 0.156 0.921 cMono_IL1B L2
ENSG00000257715 AC007298.1 232158 sc-eQTL 4.12e-01 0.12 0.146 0.921 cMono_IL1B L2
ENSG00000059758 CDK17 -142999 sc-eQTL 5.49e-01 -0.082 0.137 0.921 cMono_S100A L2
ENSG00000084110 HAL 261116 sc-eQTL 4.31e-01 0.121 0.153 0.921 cMono_S100A L2
ENSG00000111142 METAP2 783961 sc-eQTL 3.03e-01 -0.16 0.155 0.921 cMono_S100A L2
ENSG00000111144 LTA4H 213961 sc-eQTL 3.89e-01 0.132 0.153 0.921 cMono_S100A L2
ENSG00000111145 ELK3 63106 sc-eQTL 3.29e-01 -0.122 0.125 0.921 cMono_S100A L2
ENSG00000139343 SNRPF 398553 sc-eQTL 3.96e-01 -0.105 0.123 0.921 cMono_S100A L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 9.15e-01 -0.0177 0.167 0.921 cMono_S100A L2
ENSG00000257715 AC007298.1 232158 sc-eQTL 2.80e-01 0.169 0.156 0.921 cMono_S100A L2
ENSG00000059758 CDK17 -142999 sc-eQTL 8.46e-01 -0.0246 0.126 0.912 gdT L2
ENSG00000074527 NTN4 466329 sc-eQTL 9.94e-01 0.00105 0.145 0.912 gdT L2
ENSG00000111142 METAP2 783961 sc-eQTL 7.45e-01 0.059 0.181 0.912 gdT L2
ENSG00000111144 LTA4H 213961 sc-eQTL 7.66e-01 -0.0563 0.189 0.912 gdT L2
ENSG00000111145 ELK3 63106 sc-eQTL 3.77e-01 0.154 0.174 0.912 gdT L2
ENSG00000139343 SNRPF 398553 sc-eQTL 4.73e-01 -0.121 0.168 0.912 gdT L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 9.77e-01 -0.00527 0.186 0.912 gdT L2
ENSG00000188596 CFAP54 -232090 sc-eQTL 5.88e-01 0.0884 0.163 0.912 gdT L2
ENSG00000059758 CDK17 -142999 sc-eQTL 6.93e-01 0.061 0.154 0.92 intMono L2
ENSG00000084110 HAL 261116 sc-eQTL 8.60e-01 -0.0276 0.156 0.92 intMono L2
ENSG00000111142 METAP2 783961 sc-eQTL 2.83e-01 0.19 0.176 0.92 intMono L2
ENSG00000111144 LTA4H 213961 sc-eQTL 3.60e-01 0.147 0.16 0.92 intMono L2
ENSG00000111145 ELK3 63106 sc-eQTL 4.64e-01 0.105 0.143 0.92 intMono L2
ENSG00000139343 SNRPF 398553 sc-eQTL 7.76e-01 0.0435 0.153 0.92 intMono L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 8.86e-01 0.0227 0.159 0.92 intMono L2
ENSG00000257715 AC007298.1 232158 sc-eQTL 3.07e-01 0.163 0.159 0.92 intMono L2
ENSG00000059758 CDK17 -142999 sc-eQTL 3.48e-01 0.115 0.123 0.921 ncMono L2
ENSG00000084110 HAL 261116 sc-eQTL 1.27e-01 0.209 0.136 0.921 ncMono L2
ENSG00000111142 METAP2 783961 sc-eQTL 4.63e-01 0.122 0.165 0.921 ncMono L2
ENSG00000111144 LTA4H 213961 sc-eQTL 1.04e-01 0.248 0.152 0.921 ncMono L2
ENSG00000111145 ELK3 63106 sc-eQTL 6.97e-01 -0.0512 0.131 0.921 ncMono L2
ENSG00000139343 SNRPF 398553 sc-eQTL 8.79e-01 -0.0204 0.134 0.921 ncMono L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 4.20e-01 0.115 0.142 0.921 ncMono L2
ENSG00000257715 AC007298.1 232158 sc-eQTL 7.32e-01 -0.0557 0.162 0.921 ncMono L2
ENSG00000059758 CDK17 -142999 sc-eQTL 4.57e-01 -0.119 0.16 0.912 pDC L2
ENSG00000084110 HAL 261116 sc-eQTL 9.40e-02 0.226 0.134 0.912 pDC L2
ENSG00000111142 METAP2 783961 sc-eQTL 8.98e-01 0.0234 0.183 0.912 pDC L2
ENSG00000111144 LTA4H 213961 sc-eQTL 2.97e-01 -0.158 0.151 0.912 pDC L2
ENSG00000111145 ELK3 63106 sc-eQTL 4.52e-01 0.139 0.185 0.912 pDC L2
ENSG00000139343 SNRPF 398553 sc-eQTL 4.37e-01 0.126 0.161 0.912 pDC L2
ENSG00000139350 NEDD1 -649742 sc-eQTL 8.78e-02 0.303 0.177 0.912 pDC L2
ENSG00000257715 AC007298.1 232158 sc-eQTL 7.48e-01 0.0492 0.153 0.912 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -142999 sc-eQTL 5.38e-01 0.0677 0.11 0.921 B_Memory LOneK1K
ENSG00000111142 METAP2 783961 sc-eQTL 7.06e-01 0.0578 0.153 0.921 B_Memory LOneK1K
ENSG00000111144 LTA4H 213961 sc-eQTL 1.30e-01 0.173 0.113 0.921 B_Memory LOneK1K
ENSG00000111145 ELK3 63106 sc-eQTL 1.67e-01 -0.18 0.13 0.921 B_Memory LOneK1K
ENSG00000136014 USP44 706005 sc-eQTL 9.96e-01 -0.000808 0.163 0.921 B_Memory LOneK1K
ENSG00000139343 SNRPF 398553 sc-eQTL 6.30e-02 0.234 0.125 0.921 B_Memory LOneK1K
ENSG00000139350 NEDD1 -649742 sc-eQTL 7.38e-02 -0.296 0.165 0.921 B_Memory LOneK1K
ENSG00000059758 CDK17 -142999 sc-eQTL 9.62e-01 -0.00449 0.0936 0.921 B_Naive LOneK1K
ENSG00000111142 METAP2 783961 sc-eQTL 6.88e-01 -0.0509 0.127 0.921 B_Naive LOneK1K
ENSG00000111144 LTA4H 213961 sc-eQTL 1.30e-01 0.159 0.104 0.921 B_Naive LOneK1K
ENSG00000111145 ELK3 63106 sc-eQTL 9.08e-03 -0.31 0.118 0.921 B_Naive LOneK1K
ENSG00000136014 USP44 706005 sc-eQTL 8.08e-01 0.0356 0.146 0.921 B_Naive LOneK1K
ENSG00000139343 SNRPF 398553 sc-eQTL 1.45e-01 0.175 0.12 0.921 B_Naive LOneK1K
ENSG00000139350 NEDD1 -649742 sc-eQTL 2.83e-01 0.171 0.159 0.921 B_Naive LOneK1K
ENSG00000059758 CDK17 -142999 sc-eQTL 6.92e-02 -0.198 0.108 0.921 CD14_Mono LOneK1K
ENSG00000084110 HAL 261116 sc-eQTL 1.81e-01 0.177 0.132 0.921 CD14_Mono LOneK1K
ENSG00000111142 METAP2 783961 sc-eQTL 8.80e-01 -0.0188 0.125 0.921 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 213961 sc-eQTL 3.13e-01 0.147 0.145 0.921 CD14_Mono LOneK1K
ENSG00000111145 ELK3 63106 sc-eQTL 3.14e-01 -0.106 0.105 0.921 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 398553 sc-eQTL 7.07e-01 -0.0381 0.101 0.921 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -649742 sc-eQTL 6.33e-01 -0.076 0.159 0.921 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 232158 sc-eQTL 5.20e-01 0.0947 0.147 0.921 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -142999 sc-eQTL 4.91e-01 0.0796 0.115 0.922 CD16_Mono LOneK1K
ENSG00000084110 HAL 261116 sc-eQTL 1.67e-01 0.189 0.136 0.922 CD16_Mono LOneK1K
ENSG00000111142 METAP2 783961 sc-eQTL 3.76e-01 0.137 0.155 0.922 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 213961 sc-eQTL 6.53e-02 0.278 0.15 0.922 CD16_Mono LOneK1K
ENSG00000111145 ELK3 63106 sc-eQTL 8.78e-01 0.0172 0.112 0.922 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 398553 sc-eQTL 9.42e-01 -0.0084 0.115 0.922 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -649742 sc-eQTL 8.29e-01 0.0319 0.148 0.922 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 232158 sc-eQTL 9.11e-01 -0.0175 0.157 0.922 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -142999 sc-eQTL 7.09e-01 0.03 0.0802 0.922 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 783961 sc-eQTL 5.35e-01 -0.0757 0.122 0.922 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 213961 sc-eQTL 3.03e-01 -0.144 0.139 0.922 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 63106 sc-eQTL 2.55e-01 0.145 0.127 0.922 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 398553 sc-eQTL 4.44e-01 -0.0837 0.109 0.922 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -649742 sc-eQTL 8.57e-01 0.0246 0.136 0.922 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000059758 CDK17 -142999 eQTL 4.28e-02 0.0491 0.0242 0.00127 0.0 0.0589

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000059758 CDK17 -142999 4.41e-06 4.77e-06 7.56e-07 2.65e-06 7.91e-07 1.27e-06 4.13e-06 9.93e-07 4.7e-06 1.97e-06 4.9e-06 3.39e-06 7.58e-06 2.13e-06 1.26e-06 2.23e-06 2.06e-06 2.72e-06 1.42e-06 9.72e-07 1.97e-06 4.1e-06 3.53e-06 1.9e-06 5.08e-06 1.34e-06 2.25e-06 1.48e-06 4.28e-06 3.75e-06 2.51e-06 5.43e-07 7.71e-07 1.61e-06 2.09e-06 9.36e-07 9.41e-07 4.74e-07 1.27e-06 3.46e-07 1.52e-07 4.84e-06 3.64e-07 1.55e-07 3.64e-07 3.05e-07 8.3e-07 2.4e-07 1.78e-07
ENSG00000139344 \N 314150 1.25e-06 9.44e-07 2.62e-07 5.51e-07 1.16e-07 4.06e-07 1.08e-06 3.24e-07 1.11e-06 3.11e-07 1.32e-06 5.68e-07 1.46e-06 2.61e-07 4.01e-07 4.29e-07 7.96e-07 5.66e-07 3.71e-07 4.06e-07 3.49e-07 8.11e-07 6.11e-07 4.61e-07 1.66e-06 2.94e-07 5.82e-07 4.4e-07 8.24e-07 1.04e-06 5.43e-07 4.97e-08 1.75e-07 2.72e-07 3.42e-07 3.32e-07 4.21e-07 1.36e-07 1.83e-07 8.85e-09 9.91e-08 1.09e-06 9.55e-08 1.3e-07 1.7e-07 7.36e-08 1.47e-07 8.88e-08 9.32e-08