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Genes within 1Mb (chr12:96248455:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -152025 sc-eQTL 2.72e-02 -0.325 0.146 0.051 CD8_TCM L2
ENSG00000111142 METAP2 774935 sc-eQTL 5.00e-02 0.431 0.219 0.051 CD8_TCM L2
ENSG00000111144 LTA4H 204935 sc-eQTL 6.81e-01 0.0895 0.217 0.051 CD8_TCM L2
ENSG00000111145 ELK3 54080 sc-eQTL 7.58e-02 -0.326 0.183 0.051 CD8_TCM L2
ENSG00000136014 USP44 696979 sc-eQTL 1.55e-01 -0.283 0.198 0.051 CD8_TCM L2
ENSG00000139343 SNRPF 389527 sc-eQTL 5.29e-01 0.134 0.212 0.051 CD8_TCM L2
ENSG00000139350 NEDD1 -658768 sc-eQTL 6.47e-03 0.561 0.204 0.051 CD8_TCM L2
ENSG00000059758 CDK17 -152025 sc-eQTL 8.46e-01 0.033 0.17 0.05 NK_HLA L2
ENSG00000111142 METAP2 774935 sc-eQTL 8.45e-02 -0.368 0.212 0.05 NK_HLA L2
ENSG00000111144 LTA4H 204935 sc-eQTL 9.93e-01 -0.002 0.223 0.05 NK_HLA L2
ENSG00000111145 ELK3 54080 sc-eQTL 8.11e-01 -0.0496 0.207 0.05 NK_HLA L2
ENSG00000139343 SNRPF 389527 sc-eQTL 5.87e-01 -0.117 0.215 0.05 NK_HLA L2
ENSG00000139350 NEDD1 -658768 sc-eQTL 8.22e-01 -0.046 0.204 0.05 NK_HLA L2
ENSG00000059758 CDK17 -152025 sc-eQTL 7.60e-01 0.0508 0.166 0.052 gdT L2
ENSG00000074527 NTN4 457303 sc-eQTL 6.38e-01 0.0896 0.19 0.052 gdT L2
ENSG00000111142 METAP2 774935 sc-eQTL 6.05e-01 -0.123 0.238 0.052 gdT L2
ENSG00000111144 LTA4H 204935 sc-eQTL 6.05e-01 -0.128 0.248 0.052 gdT L2
ENSG00000111145 ELK3 54080 sc-eQTL 9.10e-01 -0.0259 0.23 0.052 gdT L2
ENSG00000139343 SNRPF 389527 sc-eQTL 8.99e-02 0.374 0.219 0.052 gdT L2
ENSG00000139350 NEDD1 -658768 sc-eQTL 8.46e-01 0.0475 0.245 0.052 gdT L2
ENSG00000188596 CFAP54 -241116 sc-eQTL 7.21e-01 -0.0766 0.214 0.052 gdT L2
ENSG00000059758 CDK17 -152025 sc-eQTL 9.89e-01 -0.00281 0.205 0.051 pDC L2
ENSG00000084110 HAL 252090 sc-eQTL 3.62e-01 -0.158 0.172 0.051 pDC L2
ENSG00000111142 METAP2 774935 sc-eQTL 7.27e-01 -0.0817 0.233 0.051 pDC L2
ENSG00000111144 LTA4H 204935 sc-eQTL 9.73e-01 0.00667 0.193 0.051 pDC L2
ENSG00000111145 ELK3 54080 sc-eQTL 2.52e-01 -0.271 0.236 0.051 pDC L2
ENSG00000139343 SNRPF 389527 sc-eQTL 4.88e-01 -0.143 0.206 0.051 pDC L2
ENSG00000139350 NEDD1 -658768 sc-eQTL 9.56e-02 -0.379 0.226 0.051 pDC L2
ENSG00000257715 AC007298.1 223132 sc-eQTL 3.06e-02 -0.42 0.192 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000139344 \N 305124 1.92e-06 2.67e-06 2.5e-07 1.28e-06 2.19e-07 6.4e-07 1.22e-06 2.66e-07 1.68e-06 4.31e-07 2.1e-06 7.92e-07 2.64e-06 5.72e-07 4.52e-07 9.19e-07 1.02e-06 1.08e-06 8.15e-07 6.26e-07 7.16e-07 1.95e-06 1.04e-06 4.59e-07 3.36e-06 4.11e-07 9.36e-07 9.19e-07 1.63e-06 1.17e-06 8.46e-07 3.31e-08 2.16e-07 6.95e-07 5.49e-07 2.96e-07 7.3e-07 2.23e-07 1.51e-07 6.46e-08 2.84e-07 3.29e-06 4.1e-07 1.46e-07 1.16e-07 1.29e-07 2.3e-07 1.17e-08 5.56e-08