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Genes within 1Mb (chr12:96240801:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -159679 sc-eQTL 9.13e-01 0.00521 0.0476 0.643 B L1
ENSG00000111142 METAP2 767281 sc-eQTL 8.53e-01 -0.0125 0.0673 0.643 B L1
ENSG00000111144 LTA4H 197281 sc-eQTL 8.21e-01 0.0134 0.0591 0.643 B L1
ENSG00000111145 ELK3 46426 sc-eQTL 1.71e-01 -0.0861 0.0627 0.643 B L1
ENSG00000136014 USP44 689325 sc-eQTL 9.53e-01 0.00459 0.0776 0.643 B L1
ENSG00000139343 SNRPF 381873 sc-eQTL 7.53e-01 0.018 0.0572 0.643 B L1
ENSG00000139350 NEDD1 -666422 sc-eQTL 7.87e-01 -0.0225 0.0834 0.643 B L1
ENSG00000059758 CDK17 -159679 sc-eQTL 6.57e-01 -0.0173 0.0388 0.643 CD4T L1
ENSG00000111142 METAP2 767281 sc-eQTL 7.71e-01 0.0158 0.0542 0.643 CD4T L1
ENSG00000111144 LTA4H 197281 sc-eQTL 5.32e-02 -0.103 0.0529 0.643 CD4T L1
ENSG00000111145 ELK3 46426 sc-eQTL 3.21e-01 -0.0574 0.0577 0.643 CD4T L1
ENSG00000136014 USP44 689325 sc-eQTL 4.87e-01 -0.0573 0.0824 0.643 CD4T L1
ENSG00000139343 SNRPF 381873 sc-eQTL 7.50e-01 -0.0161 0.0505 0.643 CD4T L1
ENSG00000139350 NEDD1 -666422 sc-eQTL 7.31e-01 0.0214 0.0622 0.643 CD4T L1
ENSG00000059758 CDK17 -159679 sc-eQTL 7.64e-01 -0.012 0.04 0.643 CD8T L1
ENSG00000111142 METAP2 767281 sc-eQTL 8.58e-01 0.0116 0.0646 0.643 CD8T L1
ENSG00000111144 LTA4H 197281 sc-eQTL 4.50e-01 -0.0325 0.0429 0.643 CD8T L1
ENSG00000111145 ELK3 46426 sc-eQTL 4.39e-01 -0.0501 0.0646 0.643 CD8T L1
ENSG00000136014 USP44 689325 sc-eQTL 5.22e-01 -0.0471 0.0735 0.643 CD8T L1
ENSG00000139343 SNRPF 381873 sc-eQTL 5.99e-01 0.0279 0.053 0.643 CD8T L1
ENSG00000139350 NEDD1 -666422 sc-eQTL 8.71e-02 -0.12 0.07 0.643 CD8T L1
ENSG00000059758 CDK17 -159679 sc-eQTL 8.52e-01 -0.0138 0.0739 0.64 DC L1
ENSG00000084110 HAL 244436 sc-eQTL 4.13e-01 0.0689 0.084 0.64 DC L1
ENSG00000111142 METAP2 767281 sc-eQTL 9.31e-01 0.00807 0.0927 0.64 DC L1
ENSG00000111144 LTA4H 197281 sc-eQTL 8.80e-01 0.0104 0.0688 0.64 DC L1
ENSG00000111145 ELK3 46426 sc-eQTL 1.97e-01 0.109 0.0839 0.64 DC L1
ENSG00000139343 SNRPF 381873 sc-eQTL 7.90e-01 0.0187 0.0701 0.64 DC L1
ENSG00000139350 NEDD1 -666422 sc-eQTL 3.07e-01 0.092 0.0897 0.64 DC L1
ENSG00000257715 AC007298.1 215478 sc-eQTL 4.05e-01 -0.0677 0.0811 0.64 DC L1
ENSG00000059758 CDK17 -159679 sc-eQTL 1.06e-01 -0.0987 0.0608 0.643 Mono L1
ENSG00000084110 HAL 244436 sc-eQTL 4.05e-02 0.157 0.0763 0.643 Mono L1
ENSG00000111142 METAP2 767281 sc-eQTL 4.47e-01 0.0507 0.0665 0.643 Mono L1
ENSG00000111144 LTA4H 197281 sc-eQTL 6.42e-01 -0.0405 0.087 0.643 Mono L1
ENSG00000111145 ELK3 46426 sc-eQTL 7.61e-01 -0.0178 0.0584 0.643 Mono L1
ENSG00000139343 SNRPF 381873 sc-eQTL 1.58e-01 -0.0776 0.0548 0.643 Mono L1
ENSG00000139350 NEDD1 -666422 sc-eQTL 2.85e-01 -0.0904 0.0844 0.643 Mono L1
ENSG00000257715 AC007298.1 215478 sc-eQTL 8.72e-01 0.0133 0.082 0.643 Mono L1
ENSG00000059758 CDK17 -159679 sc-eQTL 7.81e-02 0.0777 0.0439 0.644 NK L1
ENSG00000111142 METAP2 767281 sc-eQTL 8.83e-01 -0.00963 0.0654 0.644 NK L1
ENSG00000111144 LTA4H 197281 sc-eQTL 9.01e-01 -0.00931 0.075 0.644 NK L1
ENSG00000111145 ELK3 46426 sc-eQTL 4.71e-01 0.0514 0.0711 0.644 NK L1
ENSG00000139343 SNRPF 381873 sc-eQTL 4.52e-01 -0.0445 0.0589 0.644 NK L1
ENSG00000139350 NEDD1 -666422 sc-eQTL 1.45e-02 -0.182 0.0737 0.644 NK L1
ENSG00000059758 CDK17 -159679 sc-eQTL 2.99e-01 -0.0386 0.0371 0.643 Other_T L1
ENSG00000074527 NTN4 449649 sc-eQTL 6.93e-01 -0.0272 0.0688 0.643 Other_T L1
ENSG00000111142 METAP2 767281 sc-eQTL 3.50e-01 0.0664 0.0709 0.643 Other_T L1
ENSG00000111144 LTA4H 197281 sc-eQTL 7.39e-01 -0.026 0.0777 0.643 Other_T L1
ENSG00000111145 ELK3 46426 sc-eQTL 7.30e-01 0.0209 0.0607 0.643 Other_T L1
ENSG00000139343 SNRPF 381873 sc-eQTL 7.73e-01 0.0163 0.0564 0.643 Other_T L1
ENSG00000139350 NEDD1 -666422 sc-eQTL 5.53e-01 -0.051 0.0858 0.643 Other_T L1
ENSG00000188596 CFAP54 -248770 sc-eQTL 9.00e-01 0.0112 0.0889 0.643 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -159679 sc-eQTL 6.86e-01 0.035 0.0866 0.645 B_Activated L2
ENSG00000111142 METAP2 767281 sc-eQTL 3.88e-02 0.224 0.108 0.645 B_Activated L2
ENSG00000111144 LTA4H 197281 sc-eQTL 9.16e-01 0.0103 0.098 0.645 B_Activated L2
ENSG00000111145 ELK3 46426 sc-eQTL 4.90e-01 0.0717 0.104 0.645 B_Activated L2
ENSG00000136014 USP44 689325 sc-eQTL 7.35e-01 -0.027 0.0797 0.645 B_Activated L2
ENSG00000139343 SNRPF 381873 sc-eQTL 7.27e-01 0.0342 0.0979 0.645 B_Activated L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 4.91e-01 -0.0706 0.102 0.645 B_Activated L2
ENSG00000059758 CDK17 -159679 sc-eQTL 7.94e-01 -0.0192 0.0733 0.642 B_Intermediate L2
ENSG00000111142 METAP2 767281 sc-eQTL 5.46e-01 -0.0509 0.084 0.642 B_Intermediate L2
ENSG00000111144 LTA4H 197281 sc-eQTL 6.95e-01 -0.0279 0.071 0.642 B_Intermediate L2
ENSG00000111145 ELK3 46426 sc-eQTL 7.44e-02 -0.143 0.0795 0.642 B_Intermediate L2
ENSG00000136014 USP44 689325 sc-eQTL 5.01e-01 -0.0636 0.0943 0.642 B_Intermediate L2
ENSG00000139343 SNRPF 381873 sc-eQTL 9.94e-01 0.000611 0.0798 0.642 B_Intermediate L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 1.55e-01 -0.133 0.093 0.642 B_Intermediate L2
ENSG00000059758 CDK17 -159679 sc-eQTL 9.01e-01 0.00885 0.0712 0.64 B_Memory L2
ENSG00000111142 METAP2 767281 sc-eQTL 3.15e-01 0.093 0.0923 0.64 B_Memory L2
ENSG00000111144 LTA4H 197281 sc-eQTL 8.73e-01 0.0131 0.0822 0.64 B_Memory L2
ENSG00000111145 ELK3 46426 sc-eQTL 2.52e-01 -0.0925 0.0805 0.64 B_Memory L2
ENSG00000136014 USP44 689325 sc-eQTL 7.78e-01 0.0251 0.0886 0.64 B_Memory L2
ENSG00000139343 SNRPF 381873 sc-eQTL 1.59e-01 0.12 0.0852 0.64 B_Memory L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 1.08e-01 -0.152 0.0941 0.64 B_Memory L2
ENSG00000059758 CDK17 -159679 sc-eQTL 1.33e-01 -0.0893 0.0591 0.643 B_Naive1 L2
ENSG00000111142 METAP2 767281 sc-eQTL 8.64e-01 -0.0132 0.0769 0.643 B_Naive1 L2
ENSG00000111144 LTA4H 197281 sc-eQTL 7.14e-01 -0.0229 0.0622 0.643 B_Naive1 L2
ENSG00000111145 ELK3 46426 sc-eQTL 6.02e-01 -0.0384 0.0735 0.643 B_Naive1 L2
ENSG00000136014 USP44 689325 sc-eQTL 9.68e-01 0.00373 0.0925 0.643 B_Naive1 L2
ENSG00000139343 SNRPF 381873 sc-eQTL 3.81e-01 0.0627 0.0715 0.643 B_Naive1 L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 6.35e-01 -0.0437 0.0918 0.643 B_Naive1 L2
ENSG00000059758 CDK17 -159679 sc-eQTL 9.39e-01 0.00565 0.0739 0.642 B_Naive2 L2
ENSG00000111142 METAP2 767281 sc-eQTL 6.53e-01 0.0402 0.0892 0.642 B_Naive2 L2
ENSG00000111144 LTA4H 197281 sc-eQTL 7.65e-01 -0.021 0.07 0.642 B_Naive2 L2
ENSG00000111145 ELK3 46426 sc-eQTL 4.30e-01 -0.0652 0.0825 0.642 B_Naive2 L2
ENSG00000136014 USP44 689325 sc-eQTL 4.81e-01 -0.0629 0.0891 0.642 B_Naive2 L2
ENSG00000139343 SNRPF 381873 sc-eQTL 1.37e-01 0.122 0.0816 0.642 B_Naive2 L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 8.15e-02 0.169 0.0968 0.642 B_Naive2 L2
ENSG00000059758 CDK17 -159679 sc-eQTL 4.81e-01 -0.0484 0.0686 0.636 CD4_CTL L2
ENSG00000111142 METAP2 767281 sc-eQTL 3.81e-01 0.0862 0.0981 0.636 CD4_CTL L2
ENSG00000111144 LTA4H 197281 sc-eQTL 1.48e-01 -0.14 0.0964 0.636 CD4_CTL L2
ENSG00000111145 ELK3 46426 sc-eQTL 8.32e-01 0.0209 0.0981 0.636 CD4_CTL L2
ENSG00000136014 USP44 689325 sc-eQTL 6.49e-01 0.0357 0.0782 0.636 CD4_CTL L2
ENSG00000139343 SNRPF 381873 sc-eQTL 6.84e-01 -0.0348 0.0852 0.636 CD4_CTL L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 1.83e-01 -0.131 0.0981 0.636 CD4_CTL L2
ENSG00000059758 CDK17 -159679 sc-eQTL 5.67e-01 0.0245 0.0428 0.643 CD4_Naive L2
ENSG00000111142 METAP2 767281 sc-eQTL 4.29e-01 0.0488 0.0616 0.643 CD4_Naive L2
ENSG00000111144 LTA4H 197281 sc-eQTL 2.04e-02 -0.143 0.0611 0.643 CD4_Naive L2
ENSG00000111145 ELK3 46426 sc-eQTL 6.67e-01 -0.0267 0.0619 0.643 CD4_Naive L2
ENSG00000136014 USP44 689325 sc-eQTL 6.21e-01 -0.043 0.0867 0.643 CD4_Naive L2
ENSG00000139343 SNRPF 381873 sc-eQTL 9.37e-01 -0.00435 0.055 0.643 CD4_Naive L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 6.03e-01 -0.0352 0.0677 0.643 CD4_Naive L2
ENSG00000059758 CDK17 -159679 sc-eQTL 1.40e-01 -0.0617 0.0417 0.643 CD4_TCM L2
ENSG00000111142 METAP2 767281 sc-eQTL 4.19e-01 -0.0578 0.0713 0.643 CD4_TCM L2
ENSG00000111144 LTA4H 197281 sc-eQTL 6.26e-01 0.0347 0.0711 0.643 CD4_TCM L2
ENSG00000111145 ELK3 46426 sc-eQTL 3.28e-01 -0.0685 0.0698 0.643 CD4_TCM L2
ENSG00000136014 USP44 689325 sc-eQTL 6.26e-01 -0.0472 0.0967 0.643 CD4_TCM L2
ENSG00000139343 SNRPF 381873 sc-eQTL 6.77e-01 0.0239 0.0574 0.643 CD4_TCM L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 2.38e-01 0.0926 0.0782 0.643 CD4_TCM L2
ENSG00000059758 CDK17 -159679 sc-eQTL 3.15e-01 0.0515 0.0512 0.643 CD4_TEM L2
ENSG00000111142 METAP2 767281 sc-eQTL 6.33e-01 0.0409 0.0857 0.643 CD4_TEM L2
ENSG00000111144 LTA4H 197281 sc-eQTL 9.04e-01 -0.00951 0.0792 0.643 CD4_TEM L2
ENSG00000111145 ELK3 46426 sc-eQTL 5.06e-01 -0.0489 0.0735 0.643 CD4_TEM L2
ENSG00000136014 USP44 689325 sc-eQTL 5.13e-01 -0.0593 0.0904 0.643 CD4_TEM L2
ENSG00000139343 SNRPF 381873 sc-eQTL 2.48e-01 -0.0889 0.0768 0.643 CD4_TEM L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 7.85e-01 0.0249 0.0913 0.643 CD4_TEM L2
ENSG00000059758 CDK17 -159679 sc-eQTL 4.29e-01 0.0399 0.0503 0.643 CD8_CTL L2
ENSG00000111142 METAP2 767281 sc-eQTL 4.56e-01 -0.0649 0.087 0.643 CD8_CTL L2
ENSG00000111144 LTA4H 197281 sc-eQTL 7.32e-01 0.0312 0.091 0.643 CD8_CTL L2
ENSG00000111145 ELK3 46426 sc-eQTL 2.56e-01 0.0942 0.0826 0.643 CD8_CTL L2
ENSG00000136014 USP44 689325 sc-eQTL 8.47e-01 0.0178 0.0923 0.643 CD8_CTL L2
ENSG00000139343 SNRPF 381873 sc-eQTL 7.47e-01 -0.0246 0.0761 0.643 CD8_CTL L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 9.78e-01 0.0024 0.0854 0.643 CD8_CTL L2
ENSG00000059758 CDK17 -159679 sc-eQTL 8.61e-01 -0.0105 0.0598 0.643 CD8_Naive L2
ENSG00000111142 METAP2 767281 sc-eQTL 1.39e-01 0.117 0.079 0.643 CD8_Naive L2
ENSG00000111144 LTA4H 197281 sc-eQTL 4.75e-01 0.0512 0.0715 0.643 CD8_Naive L2
ENSG00000111145 ELK3 46426 sc-eQTL 7.11e-01 0.0281 0.0757 0.643 CD8_Naive L2
ENSG00000136014 USP44 689325 sc-eQTL 2.02e-01 -0.102 0.0793 0.643 CD8_Naive L2
ENSG00000139343 SNRPF 381873 sc-eQTL 9.71e-01 -0.00252 0.0681 0.643 CD8_Naive L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 1.35e-01 -0.121 0.0807 0.643 CD8_Naive L2
ENSG00000059758 CDK17 -159679 sc-eQTL 3.95e-01 0.0569 0.0667 0.641 CD8_TCM L2
ENSG00000111142 METAP2 767281 sc-eQTL 9.09e-01 -0.0115 0.0998 0.641 CD8_TCM L2
ENSG00000111144 LTA4H 197281 sc-eQTL 8.84e-01 -0.0144 0.0982 0.641 CD8_TCM L2
ENSG00000111145 ELK3 46426 sc-eQTL 4.89e-01 -0.0576 0.0831 0.641 CD8_TCM L2
ENSG00000136014 USP44 689325 sc-eQTL 7.18e-01 0.0326 0.0901 0.641 CD8_TCM L2
ENSG00000139343 SNRPF 381873 sc-eQTL 9.28e-01 -0.00871 0.0958 0.641 CD8_TCM L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 4.09e-01 -0.0776 0.0936 0.641 CD8_TCM L2
ENSG00000059758 CDK17 -159679 sc-eQTL 5.40e-01 0.0495 0.0807 0.655 CD8_TEM L2
ENSG00000111142 METAP2 767281 sc-eQTL 8.83e-01 0.014 0.0948 0.655 CD8_TEM L2
ENSG00000111144 LTA4H 197281 sc-eQTL 5.72e-01 -0.056 0.0988 0.655 CD8_TEM L2
ENSG00000111145 ELK3 46426 sc-eQTL 1.16e-01 -0.152 0.0966 0.655 CD8_TEM L2
ENSG00000136014 USP44 689325 sc-eQTL 1.06e-01 0.133 0.0822 0.655 CD8_TEM L2
ENSG00000139343 SNRPF 381873 sc-eQTL 9.93e-01 -0.000762 0.0904 0.655 CD8_TEM L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 7.72e-02 -0.173 0.0973 0.655 CD8_TEM L2
ENSG00000059758 CDK17 -159679 sc-eQTL 1.71e-02 -0.129 0.0537 0.645 MAIT L2
ENSG00000074527 NTN4 449649 sc-eQTL 7.88e-01 -0.0198 0.0734 0.645 MAIT L2
ENSG00000111142 METAP2 767281 sc-eQTL 2.12e-01 0.115 0.092 0.645 MAIT L2
ENSG00000111144 LTA4H 197281 sc-eQTL 9.50e-01 -0.00526 0.0841 0.645 MAIT L2
ENSG00000111145 ELK3 46426 sc-eQTL 9.53e-01 -0.00417 0.0706 0.645 MAIT L2
ENSG00000139343 SNRPF 381873 sc-eQTL 9.76e-01 0.00242 0.0818 0.645 MAIT L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 3.48e-01 -0.0862 0.0916 0.645 MAIT L2
ENSG00000188596 CFAP54 -248770 sc-eQTL 7.42e-01 0.03 0.091 0.645 MAIT L2
ENSG00000059758 CDK17 -159679 sc-eQTL 7.65e-01 0.0168 0.056 0.644 NK_CD56bright L2
ENSG00000111142 METAP2 767281 sc-eQTL 6.01e-01 0.0495 0.0945 0.644 NK_CD56bright L2
ENSG00000111144 LTA4H 197281 sc-eQTL 8.21e-01 -0.0188 0.0829 0.644 NK_CD56bright L2
ENSG00000111145 ELK3 46426 sc-eQTL 8.36e-01 0.0183 0.088 0.644 NK_CD56bright L2
ENSG00000139343 SNRPF 381873 sc-eQTL 6.50e-01 -0.0418 0.092 0.644 NK_CD56bright L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 5.27e-01 -0.0588 0.0928 0.644 NK_CD56bright L2
ENSG00000059758 CDK17 -159679 sc-eQTL 2.25e-02 0.11 0.048 0.644 NK_CD56dim L2
ENSG00000111142 METAP2 767281 sc-eQTL 6.25e-01 -0.0417 0.085 0.644 NK_CD56dim L2
ENSG00000111144 LTA4H 197281 sc-eQTL 5.31e-01 -0.055 0.0876 0.644 NK_CD56dim L2
ENSG00000111145 ELK3 46426 sc-eQTL 4.25e-01 -0.062 0.0775 0.644 NK_CD56dim L2
ENSG00000139343 SNRPF 381873 sc-eQTL 2.35e-01 -0.0878 0.0737 0.644 NK_CD56dim L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 4.33e-02 -0.171 0.0843 0.644 NK_CD56dim L2
ENSG00000059758 CDK17 -159679 sc-eQTL 5.72e-01 -0.0422 0.0745 0.646 NK_HLA L2
ENSG00000111142 METAP2 767281 sc-eQTL 1.64e-01 0.131 0.0935 0.646 NK_HLA L2
ENSG00000111144 LTA4H 197281 sc-eQTL 1.58e-01 -0.138 0.0973 0.646 NK_HLA L2
ENSG00000111145 ELK3 46426 sc-eQTL 2.36e-01 0.107 0.0904 0.646 NK_HLA L2
ENSG00000139343 SNRPF 381873 sc-eQTL 5.91e-01 0.0508 0.0945 0.646 NK_HLA L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 6.31e-01 -0.0429 0.0894 0.646 NK_HLA L2
ENSG00000059758 CDK17 -159679 sc-eQTL 4.54e-01 0.0396 0.0528 0.644 NK_cytokine L2
ENSG00000111142 METAP2 767281 sc-eQTL 7.63e-01 0.0265 0.0878 0.644 NK_cytokine L2
ENSG00000111144 LTA4H 197281 sc-eQTL 5.04e-01 0.0598 0.0893 0.644 NK_cytokine L2
ENSG00000111145 ELK3 46426 sc-eQTL 5.07e-01 0.0569 0.0855 0.644 NK_cytokine L2
ENSG00000139343 SNRPF 381873 sc-eQTL 6.48e-01 -0.0331 0.0724 0.644 NK_cytokine L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 3.12e-02 -0.192 0.0886 0.644 NK_cytokine L2
ENSG00000059758 CDK17 -159679 sc-eQTL 1.48e-01 0.138 0.0945 0.641 PB L2
ENSG00000111142 METAP2 767281 sc-eQTL 4.50e-01 0.0844 0.111 0.641 PB L2
ENSG00000111144 LTA4H 197281 sc-eQTL 4.06e-01 -0.07 0.0839 0.641 PB L2
ENSG00000111145 ELK3 46426 sc-eQTL 5.32e-01 0.0674 0.108 0.641 PB L2
ENSG00000136014 USP44 689325 sc-eQTL 2.25e-01 -0.121 0.0992 0.641 PB L2
ENSG00000139343 SNRPF 381873 sc-eQTL 2.85e-01 -0.113 0.105 0.641 PB L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 7.08e-01 0.0469 0.125 0.641 PB L2
ENSG00000059758 CDK17 -159679 sc-eQTL 8.76e-01 -0.0093 0.0596 0.641 Pro_T L2
ENSG00000074527 NTN4 449649 sc-eQTL 6.58e-01 0.0296 0.0669 0.641 Pro_T L2
ENSG00000111142 METAP2 767281 sc-eQTL 6.86e-01 0.032 0.079 0.641 Pro_T L2
ENSG00000111144 LTA4H 197281 sc-eQTL 2.25e-01 -0.0954 0.0784 0.641 Pro_T L2
ENSG00000111145 ELK3 46426 sc-eQTL 3.53e-01 -0.0884 0.095 0.641 Pro_T L2
ENSG00000139343 SNRPF 381873 sc-eQTL 9.48e-01 -0.00388 0.06 0.641 Pro_T L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 8.57e-01 -0.0158 0.0872 0.641 Pro_T L2
ENSG00000188596 CFAP54 -248770 sc-eQTL 4.11e-01 -0.058 0.0704 0.641 Pro_T L2
ENSG00000059758 CDK17 -159679 sc-eQTL 2.83e-01 -0.0701 0.0651 0.643 Treg L2
ENSG00000111142 METAP2 767281 sc-eQTL 9.51e-01 -0.00544 0.0889 0.643 Treg L2
ENSG00000111144 LTA4H 197281 sc-eQTL 4.41e-01 -0.0637 0.0826 0.643 Treg L2
ENSG00000111145 ELK3 46426 sc-eQTL 4.40e-01 -0.058 0.0748 0.643 Treg L2
ENSG00000136014 USP44 689325 sc-eQTL 2.36e-01 0.0997 0.0839 0.643 Treg L2
ENSG00000139343 SNRPF 381873 sc-eQTL 7.42e-02 0.155 0.0861 0.643 Treg L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 9.86e-01 0.00165 0.0969 0.643 Treg L2
ENSG00000059758 CDK17 -159679 sc-eQTL 9.13e-01 0.0086 0.0788 0.629 cDC L2
ENSG00000084110 HAL 244436 sc-eQTL 4.66e-01 -0.0597 0.0818 0.629 cDC L2
ENSG00000111142 METAP2 767281 sc-eQTL 5.72e-01 0.0559 0.0988 0.629 cDC L2
ENSG00000111144 LTA4H 197281 sc-eQTL 2.54e-01 0.08 0.07 0.629 cDC L2
ENSG00000111145 ELK3 46426 sc-eQTL 2.93e-01 0.0974 0.0924 0.629 cDC L2
ENSG00000139343 SNRPF 381873 sc-eQTL 4.36e-01 -0.0605 0.0774 0.629 cDC L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 9.01e-01 -0.0118 0.0945 0.629 cDC L2
ENSG00000257715 AC007298.1 215478 sc-eQTL 9.90e-01 -0.00104 0.0797 0.629 cDC L2
ENSG00000059758 CDK17 -159679 sc-eQTL 9.80e-03 -0.179 0.0686 0.643 cMono_IL1B L2
ENSG00000084110 HAL 244436 sc-eQTL 9.76e-02 0.126 0.0755 0.643 cMono_IL1B L2
ENSG00000111142 METAP2 767281 sc-eQTL 4.37e-01 0.0614 0.0787 0.643 cMono_IL1B L2
ENSG00000111144 LTA4H 197281 sc-eQTL 4.37e-01 -0.0639 0.082 0.643 cMono_IL1B L2
ENSG00000111145 ELK3 46426 sc-eQTL 4.75e-01 -0.0452 0.0632 0.643 cMono_IL1B L2
ENSG00000139343 SNRPF 381873 sc-eQTL 7.75e-01 0.0186 0.0653 0.643 cMono_IL1B L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 8.45e-01 -0.0176 0.0899 0.643 cMono_IL1B L2
ENSG00000257715 AC007298.1 215478 sc-eQTL 2.91e-01 0.0886 0.0837 0.643 cMono_IL1B L2
ENSG00000059758 CDK17 -159679 sc-eQTL 1.94e-01 -0.102 0.0782 0.643 cMono_S100A L2
ENSG00000084110 HAL 244436 sc-eQTL 1.15e-01 0.139 0.0876 0.643 cMono_S100A L2
ENSG00000111142 METAP2 767281 sc-eQTL 1.10e-01 0.142 0.0887 0.643 cMono_S100A L2
ENSG00000111144 LTA4H 197281 sc-eQTL 4.20e-01 -0.071 0.0879 0.643 cMono_S100A L2
ENSG00000111145 ELK3 46426 sc-eQTL 5.37e-01 0.0443 0.0717 0.643 cMono_S100A L2
ENSG00000139343 SNRPF 381873 sc-eQTL 2.31e-02 -0.16 0.07 0.643 cMono_S100A L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 1.08e-01 -0.153 0.0951 0.643 cMono_S100A L2
ENSG00000257715 AC007298.1 215478 sc-eQTL 6.23e-01 -0.0444 0.09 0.643 cMono_S100A L2
ENSG00000059758 CDK17 -159679 sc-eQTL 8.07e-01 0.0185 0.0758 0.645 gdT L2
ENSG00000074527 NTN4 449649 sc-eQTL 6.43e-01 -0.0404 0.0869 0.645 gdT L2
ENSG00000111142 METAP2 767281 sc-eQTL 7.83e-01 -0.03 0.109 0.645 gdT L2
ENSG00000111144 LTA4H 197281 sc-eQTL 2.71e-01 0.125 0.113 0.645 gdT L2
ENSG00000111145 ELK3 46426 sc-eQTL 2.34e-01 0.125 0.104 0.645 gdT L2
ENSG00000139343 SNRPF 381873 sc-eQTL 2.69e-02 0.222 0.0995 0.645 gdT L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 2.67e-01 -0.124 0.111 0.645 gdT L2
ENSG00000188596 CFAP54 -248770 sc-eQTL 6.83e-01 0.04 0.0979 0.645 gdT L2
ENSG00000059758 CDK17 -159679 sc-eQTL 9.25e-01 0.00828 0.088 0.64 intMono L2
ENSG00000084110 HAL 244436 sc-eQTL 5.53e-01 0.0529 0.0889 0.64 intMono L2
ENSG00000111142 METAP2 767281 sc-eQTL 7.49e-01 -0.0323 0.101 0.64 intMono L2
ENSG00000111144 LTA4H 197281 sc-eQTL 6.51e-01 0.0413 0.0912 0.64 intMono L2
ENSG00000111145 ELK3 46426 sc-eQTL 5.94e-01 -0.0433 0.0813 0.64 intMono L2
ENSG00000139343 SNRPF 381873 sc-eQTL 7.84e-02 -0.153 0.0862 0.64 intMono L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 9.53e-01 -0.00528 0.0903 0.64 intMono L2
ENSG00000257715 AC007298.1 215478 sc-eQTL 4.07e-01 0.0754 0.0907 0.64 intMono L2
ENSG00000059758 CDK17 -159679 sc-eQTL 2.19e-01 0.0877 0.0711 0.64 ncMono L2
ENSG00000084110 HAL 244436 sc-eQTL 5.87e-01 -0.0433 0.0797 0.64 ncMono L2
ENSG00000111142 METAP2 767281 sc-eQTL 6.84e-01 0.0392 0.0963 0.64 ncMono L2
ENSG00000111144 LTA4H 197281 sc-eQTL 9.69e-01 0.00343 0.0889 0.64 ncMono L2
ENSG00000111145 ELK3 46426 sc-eQTL 8.31e-01 -0.0163 0.0763 0.64 ncMono L2
ENSG00000139343 SNRPF 381873 sc-eQTL 7.93e-02 -0.136 0.0773 0.64 ncMono L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 9.67e-01 0.00343 0.0828 0.64 ncMono L2
ENSG00000257715 AC007298.1 215478 sc-eQTL 6.40e-01 0.0442 0.0944 0.64 ncMono L2
ENSG00000059758 CDK17 -159679 sc-eQTL 8.30e-01 -0.0202 0.0938 0.63 pDC L2
ENSG00000084110 HAL 244436 sc-eQTL 1.67e-03 0.246 0.0767 0.63 pDC L2
ENSG00000111142 METAP2 767281 sc-eQTL 7.21e-01 0.0382 0.107 0.63 pDC L2
ENSG00000111144 LTA4H 197281 sc-eQTL 5.33e-01 -0.0554 0.0886 0.63 pDC L2
ENSG00000111145 ELK3 46426 sc-eQTL 6.29e-01 0.0525 0.108 0.63 pDC L2
ENSG00000139343 SNRPF 381873 sc-eQTL 8.06e-01 0.0233 0.0946 0.63 pDC L2
ENSG00000139350 NEDD1 -666422 sc-eQTL 4.50e-02 0.208 0.103 0.63 pDC L2
ENSG00000257715 AC007298.1 215478 sc-eQTL 4.24e-01 0.0716 0.0894 0.63 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -159679 sc-eQTL 8.81e-01 0.00921 0.0613 0.643 B_Memory LOneK1K
ENSG00000111142 METAP2 767281 sc-eQTL 7.42e-01 0.0281 0.0852 0.643 B_Memory LOneK1K
ENSG00000111144 LTA4H 197281 sc-eQTL 8.73e-01 0.0102 0.0636 0.643 B_Memory LOneK1K
ENSG00000111145 ELK3 46426 sc-eQTL 8.03e-02 -0.127 0.0722 0.643 B_Memory LOneK1K
ENSG00000136014 USP44 689325 sc-eQTL 9.18e-01 -0.00934 0.0906 0.643 B_Memory LOneK1K
ENSG00000139343 SNRPF 381873 sc-eQTL 2.75e-01 0.077 0.0703 0.643 B_Memory LOneK1K
ENSG00000139350 NEDD1 -666422 sc-eQTL 2.22e-02 -0.21 0.0913 0.643 B_Memory LOneK1K
ENSG00000059758 CDK17 -159679 sc-eQTL 1.41e-01 -0.0783 0.0529 0.643 B_Naive LOneK1K
ENSG00000111142 METAP2 767281 sc-eQTL 9.74e-01 -0.00231 0.072 0.643 B_Naive LOneK1K
ENSG00000111144 LTA4H 197281 sc-eQTL 9.10e-01 0.00673 0.0597 0.643 B_Naive LOneK1K
ENSG00000111145 ELK3 46426 sc-eQTL 1.30e-01 -0.103 0.0676 0.643 B_Naive LOneK1K
ENSG00000136014 USP44 689325 sc-eQTL 6.86e-01 0.0336 0.0831 0.643 B_Naive LOneK1K
ENSG00000139343 SNRPF 381873 sc-eQTL 3.16e-01 0.0687 0.0683 0.643 B_Naive LOneK1K
ENSG00000139350 NEDD1 -666422 sc-eQTL 3.50e-01 0.0847 0.0904 0.643 B_Naive LOneK1K
ENSG00000059758 CDK17 -159679 sc-eQTL 4.83e-03 -0.177 0.0622 0.643 CD14_Mono LOneK1K
ENSG00000084110 HAL 244436 sc-eQTL 1.26e-01 0.117 0.0764 0.643 CD14_Mono LOneK1K
ENSG00000111142 METAP2 767281 sc-eQTL 1.90e-01 0.0946 0.072 0.643 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 197281 sc-eQTL 7.63e-01 -0.0255 0.0843 0.643 CD14_Mono LOneK1K
ENSG00000111145 ELK3 46426 sc-eQTL 7.19e-01 -0.0219 0.0609 0.643 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 381873 sc-eQTL 3.30e-01 -0.0573 0.0586 0.643 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -666422 sc-eQTL 2.40e-01 -0.108 0.0919 0.643 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 215478 sc-eQTL 6.32e-01 0.0409 0.0854 0.643 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -159679 sc-eQTL 4.66e-01 0.047 0.0644 0.644 CD16_Mono LOneK1K
ENSG00000084110 HAL 244436 sc-eQTL 8.26e-01 0.0168 0.0762 0.644 CD16_Mono LOneK1K
ENSG00000111142 METAP2 767281 sc-eQTL 6.99e-01 0.0335 0.0864 0.644 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 197281 sc-eQTL 8.39e-01 -0.0172 0.0844 0.644 CD16_Mono LOneK1K
ENSG00000111145 ELK3 46426 sc-eQTL 2.10e-01 -0.0784 0.0623 0.644 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 381873 sc-eQTL 1.55e-01 -0.0915 0.0641 0.644 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -666422 sc-eQTL 5.81e-01 -0.0457 0.0826 0.644 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 215478 sc-eQTL 9.19e-01 0.00891 0.0875 0.644 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -159679 sc-eQTL 1.66e-01 0.0628 0.0452 0.644 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 767281 sc-eQTL 9.20e-01 -0.00698 0.0691 0.644 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 197281 sc-eQTL 9.26e-01 0.00735 0.0789 0.644 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 46426 sc-eQTL 8.89e-01 0.0101 0.0722 0.644 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 381873 sc-eQTL 2.69e-01 -0.0683 0.0616 0.644 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -666422 sc-eQTL 1.72e-02 -0.183 0.076 0.644 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111144 LTA4H 197281 eQTL 0.0244 -0.0477 0.0212 0.0 0.0 0.352
ENSG00000111145 ELK3 46426 eQTL 9.75e-08 -0.0951 0.0177 0.0 0.0 0.352

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 ELK3 46426 1.48e-05 1.51e-05 2.46e-06 1.01e-05 2.45e-06 7.99e-06 2.08e-05 2.25e-06 1.37e-05 7.19e-06 1.87e-05 7.07e-06 2.57e-05 6.43e-06 4.33e-06 9.02e-06 8.2e-06 1.13e-05 3.6e-06 3.57e-06 6.73e-06 1.36e-05 1.32e-05 4.01e-06 2.32e-05 4.65e-06 7.72e-06 5.64e-06 1.54e-05 1.25e-05 8.13e-06 1.03e-06 1.4e-06 4.07e-06 6.46e-06 2.82e-06 1.74e-06 2.45e-06 2.7e-06 2.38e-06 1.11e-06 1.85e-05 2.7e-06 1.9e-07 7.75e-07 2.44e-06 2.08e-06 8.16e-07 4.47e-07
ENSG00000188596 \N -248774 1.05e-06 4.63e-07 7.76e-08 3.54e-07 1.03e-07 3.08e-07 5.2e-07 1.38e-07 2.53e-07 1.28e-07 4.13e-07 3.08e-07 5.09e-07 9.15e-08 1.18e-07 1.39e-07 7.3e-08 2.66e-07 1.13e-07 8.25e-08 1.59e-07 2.86e-07 2.63e-07 7.94e-08 3.14e-07 1.76e-07 2.43e-07 1.54e-07 1.98e-07 2.59e-07 1.93e-07 7.41e-08 5.75e-08 1.39e-07 3.18e-07 1.8e-07 1.93e-07 2.38e-07 1.12e-07 1.6e-08 1.16e-07 2.43e-07 2.19e-07 1.93e-08 8.24e-08 3.46e-08 9.34e-08 5.66e-08 5.16e-08
ENSG00000257878 \N 244280 1.13e-06 4.93e-07 7.87e-08 3.6e-07 1.07e-07 3.32e-07 5.31e-07 1.42e-07 2.6e-07 1.39e-07 4.64e-07 3.21e-07 5.54e-07 9.48e-08 1.27e-07 1.49e-07 8.64e-08 2.83e-07 1.5e-07 8.86e-08 1.65e-07 2.99e-07 2.77e-07 1.03e-07 3.41e-07 1.86e-07 2.52e-07 1.68e-07 2.11e-07 2.97e-07 1.95e-07 6.06e-08 6.78e-08 1.4e-07 3.4e-07 1.94e-07 2.46e-07 2.24e-07 1.41e-07 8.22e-09 1.01e-07 2.71e-07 3.01e-07 2.61e-08 9.64e-08 4.23e-08 1.05e-07 5.93e-08 5.69e-08