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Genes within 1Mb (chr12:96223526:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -176954 sc-eQTL 6.06e-01 -0.023 0.0444 0.585 B L1
ENSG00000111142 METAP2 750006 sc-eQTL 3.72e-01 0.0562 0.0628 0.585 B L1
ENSG00000111144 LTA4H 180006 sc-eQTL 7.69e-01 0.0162 0.0552 0.585 B L1
ENSG00000111145 ELK3 29151 sc-eQTL 7.69e-01 0.0173 0.0588 0.585 B L1
ENSG00000136014 USP44 672050 sc-eQTL 6.09e-01 -0.0371 0.0724 0.585 B L1
ENSG00000139343 SNRPF 364598 sc-eQTL 9.18e-01 0.00549 0.0534 0.585 B L1
ENSG00000139350 NEDD1 -683697 sc-eQTL 7.62e-01 0.0237 0.0779 0.585 B L1
ENSG00000059758 CDK17 -176954 sc-eQTL 4.69e-01 -0.0267 0.0368 0.585 CD4T L1
ENSG00000111142 METAP2 750006 sc-eQTL 4.54e-01 0.0385 0.0513 0.585 CD4T L1
ENSG00000111144 LTA4H 180006 sc-eQTL 9.71e-02 -0.0837 0.0502 0.585 CD4T L1
ENSG00000111145 ELK3 29151 sc-eQTL 2.85e-01 -0.0585 0.0546 0.585 CD4T L1
ENSG00000136014 USP44 672050 sc-eQTL 1.51e-01 -0.112 0.0778 0.585 CD4T L1
ENSG00000139343 SNRPF 364598 sc-eQTL 4.76e-01 0.0341 0.0478 0.585 CD4T L1
ENSG00000139350 NEDD1 -683697 sc-eQTL 6.72e-01 0.025 0.0589 0.585 CD4T L1
ENSG00000059758 CDK17 -176954 sc-eQTL 3.30e-01 0.0371 0.038 0.585 CD8T L1
ENSG00000111142 METAP2 750006 sc-eQTL 7.32e-01 0.021 0.0614 0.585 CD8T L1
ENSG00000111144 LTA4H 180006 sc-eQTL 8.25e-02 -0.0708 0.0406 0.585 CD8T L1
ENSG00000111145 ELK3 29151 sc-eQTL 6.24e-01 -0.0302 0.0615 0.585 CD8T L1
ENSG00000136014 USP44 672050 sc-eQTL 5.74e-01 -0.0393 0.0699 0.585 CD8T L1
ENSG00000139343 SNRPF 364598 sc-eQTL 7.31e-02 0.0901 0.05 0.585 CD8T L1
ENSG00000139350 NEDD1 -683697 sc-eQTL 1.97e-01 -0.0864 0.0667 0.585 CD8T L1
ENSG00000059758 CDK17 -176954 sc-eQTL 1.81e-01 0.0953 0.0711 0.581 DC L1
ENSG00000084110 HAL 227161 sc-eQTL 3.98e-01 0.0687 0.0811 0.581 DC L1
ENSG00000111142 METAP2 750006 sc-eQTL 6.02e-01 -0.0468 0.0895 0.581 DC L1
ENSG00000111144 LTA4H 180006 sc-eQTL 1.75e-01 -0.09 0.0662 0.581 DC L1
ENSG00000111145 ELK3 29151 sc-eQTL 7.26e-01 -0.0285 0.0814 0.581 DC L1
ENSG00000139343 SNRPF 364598 sc-eQTL 4.61e-01 0.05 0.0676 0.581 DC L1
ENSG00000139350 NEDD1 -683697 sc-eQTL 9.73e-01 0.00297 0.0869 0.581 DC L1
ENSG00000257715 AC007298.1 198203 sc-eQTL 2.10e-01 -0.0982 0.0782 0.581 DC L1
ENSG00000059758 CDK17 -176954 sc-eQTL 9.88e-02 -0.0944 0.0569 0.585 Mono L1
ENSG00000084110 HAL 227161 sc-eQTL 3.85e-03 0.207 0.0708 0.585 Mono L1
ENSG00000111142 METAP2 750006 sc-eQTL 4.44e-01 0.0477 0.0623 0.585 Mono L1
ENSG00000111144 LTA4H 180006 sc-eQTL 1.75e-01 -0.11 0.0812 0.585 Mono L1
ENSG00000111145 ELK3 29151 sc-eQTL 7.40e-02 -0.0976 0.0543 0.585 Mono L1
ENSG00000139343 SNRPF 364598 sc-eQTL 4.05e-01 -0.043 0.0515 0.585 Mono L1
ENSG00000139350 NEDD1 -683697 sc-eQTL 9.37e-01 -0.00629 0.0792 0.585 Mono L1
ENSG00000257715 AC007298.1 198203 sc-eQTL 5.79e-01 -0.0426 0.0768 0.585 Mono L1
ENSG00000059758 CDK17 -176954 sc-eQTL 1.07e-01 0.0681 0.0421 0.588 NK L1
ENSG00000111142 METAP2 750006 sc-eQTL 4.03e-01 0.0524 0.0626 0.588 NK L1
ENSG00000111144 LTA4H 180006 sc-eQTL 2.23e-02 -0.164 0.071 0.588 NK L1
ENSG00000111145 ELK3 29151 sc-eQTL 3.21e-01 0.0677 0.0681 0.588 NK L1
ENSG00000139343 SNRPF 364598 sc-eQTL 1.53e-01 0.0807 0.0563 0.588 NK L1
ENSG00000139350 NEDD1 -683697 sc-eQTL 2.56e-01 -0.0813 0.0714 0.588 NK L1
ENSG00000059758 CDK17 -176954 sc-eQTL 9.70e-01 0.00133 0.0353 0.585 Other_T L1
ENSG00000074527 NTN4 432374 sc-eQTL 1.35e-01 -0.0973 0.0649 0.585 Other_T L1
ENSG00000111142 METAP2 750006 sc-eQTL 9.83e-01 -0.00148 0.0673 0.585 Other_T L1
ENSG00000111144 LTA4H 180006 sc-eQTL 9.59e-01 0.00375 0.0737 0.585 Other_T L1
ENSG00000111145 ELK3 29151 sc-eQTL 8.45e-01 -0.0113 0.0575 0.585 Other_T L1
ENSG00000139343 SNRPF 364598 sc-eQTL 5.50e-01 -0.032 0.0534 0.585 Other_T L1
ENSG00000139350 NEDD1 -683697 sc-eQTL 4.25e-01 -0.065 0.0813 0.585 Other_T L1
ENSG00000188596 CFAP54 -266045 sc-eQTL 7.80e-01 -0.0235 0.0843 0.585 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -176954 sc-eQTL 1.78e-01 0.106 0.078 0.574 B_Activated L2
ENSG00000111142 METAP2 750006 sc-eQTL 3.62e-01 0.0899 0.0985 0.574 B_Activated L2
ENSG00000111144 LTA4H 180006 sc-eQTL 8.90e-01 0.0123 0.0888 0.574 B_Activated L2
ENSG00000111145 ELK3 29151 sc-eQTL 9.24e-01 -0.00898 0.0941 0.574 B_Activated L2
ENSG00000136014 USP44 672050 sc-eQTL 7.11e-01 -0.0268 0.0722 0.574 B_Activated L2
ENSG00000139343 SNRPF 364598 sc-eQTL 3.62e-01 -0.0809 0.0885 0.574 B_Activated L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 1.16e-01 -0.146 0.0921 0.574 B_Activated L2
ENSG00000059758 CDK17 -176954 sc-eQTL 9.28e-02 -0.116 0.0688 0.584 B_Intermediate L2
ENSG00000111142 METAP2 750006 sc-eQTL 1.63e-01 -0.111 0.0791 0.584 B_Intermediate L2
ENSG00000111144 LTA4H 180006 sc-eQTL 9.20e-01 0.00675 0.0671 0.584 B_Intermediate L2
ENSG00000111145 ELK3 29151 sc-eQTL 4.18e-01 -0.0613 0.0755 0.584 B_Intermediate L2
ENSG00000136014 USP44 672050 sc-eQTL 8.56e-01 -0.0162 0.0892 0.584 B_Intermediate L2
ENSG00000139343 SNRPF 364598 sc-eQTL 2.68e-01 -0.0835 0.0751 0.584 B_Intermediate L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 8.73e-01 -0.0141 0.0883 0.584 B_Intermediate L2
ENSG00000059758 CDK17 -176954 sc-eQTL 5.74e-01 -0.0381 0.0676 0.582 B_Memory L2
ENSG00000111142 METAP2 750006 sc-eQTL 1.27e-01 0.134 0.0875 0.582 B_Memory L2
ENSG00000111144 LTA4H 180006 sc-eQTL 5.93e-01 0.0417 0.0781 0.582 B_Memory L2
ENSG00000111145 ELK3 29151 sc-eQTL 8.70e-01 0.0126 0.0768 0.582 B_Memory L2
ENSG00000136014 USP44 672050 sc-eQTL 3.81e-01 -0.0739 0.0841 0.582 B_Memory L2
ENSG00000139343 SNRPF 364598 sc-eQTL 2.39e-01 0.0958 0.0811 0.582 B_Memory L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 6.15e-01 -0.0453 0.09 0.582 B_Memory L2
ENSG00000059758 CDK17 -176954 sc-eQTL 8.82e-01 0.00831 0.0558 0.585 B_Naive1 L2
ENSG00000111142 METAP2 750006 sc-eQTL 2.56e-01 0.082 0.072 0.585 B_Naive1 L2
ENSG00000111144 LTA4H 180006 sc-eQTL 9.20e-01 -0.00588 0.0585 0.585 B_Naive1 L2
ENSG00000111145 ELK3 29151 sc-eQTL 3.32e-01 0.067 0.0689 0.585 B_Naive1 L2
ENSG00000136014 USP44 672050 sc-eQTL 9.00e-01 0.011 0.0869 0.585 B_Naive1 L2
ENSG00000139343 SNRPF 364598 sc-eQTL 4.48e-01 0.0511 0.0671 0.585 B_Naive1 L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 8.27e-01 -0.0188 0.0862 0.585 B_Naive1 L2
ENSG00000059758 CDK17 -176954 sc-eQTL 5.37e-01 -0.0432 0.0699 0.584 B_Naive2 L2
ENSG00000111142 METAP2 750006 sc-eQTL 7.57e-01 0.0261 0.0844 0.584 B_Naive2 L2
ENSG00000111144 LTA4H 180006 sc-eQTL 9.26e-01 -0.00615 0.0663 0.584 B_Naive2 L2
ENSG00000111145 ELK3 29151 sc-eQTL 9.83e-01 -0.00165 0.0781 0.584 B_Naive2 L2
ENSG00000136014 USP44 672050 sc-eQTL 2.69e-01 -0.0932 0.0841 0.584 B_Naive2 L2
ENSG00000139343 SNRPF 364598 sc-eQTL 2.27e-01 0.0936 0.0773 0.584 B_Naive2 L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 9.77e-01 -0.00263 0.0922 0.584 B_Naive2 L2
ENSG00000059758 CDK17 -176954 sc-eQTL 8.09e-01 -0.0159 0.0655 0.58 CD4_CTL L2
ENSG00000111142 METAP2 750006 sc-eQTL 9.47e-01 -0.00621 0.0938 0.58 CD4_CTL L2
ENSG00000111144 LTA4H 180006 sc-eQTL 3.92e-03 -0.264 0.0905 0.58 CD4_CTL L2
ENSG00000111145 ELK3 29151 sc-eQTL 7.05e-01 -0.0355 0.0935 0.58 CD4_CTL L2
ENSG00000136014 USP44 672050 sc-eQTL 9.98e-01 -0.00015 0.0747 0.58 CD4_CTL L2
ENSG00000139343 SNRPF 364598 sc-eQTL 2.10e-01 -0.102 0.081 0.58 CD4_CTL L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 2.57e-01 -0.107 0.0937 0.58 CD4_CTL L2
ENSG00000059758 CDK17 -176954 sc-eQTL 9.53e-01 -0.00239 0.0404 0.585 CD4_Naive L2
ENSG00000111142 METAP2 750006 sc-eQTL 6.55e-01 0.026 0.0582 0.585 CD4_Naive L2
ENSG00000111144 LTA4H 180006 sc-eQTL 1.36e-01 -0.0871 0.0581 0.585 CD4_Naive L2
ENSG00000111145 ELK3 29151 sc-eQTL 5.70e-01 0.0332 0.0584 0.585 CD4_Naive L2
ENSG00000136014 USP44 672050 sc-eQTL 1.23e-01 -0.126 0.0815 0.585 CD4_Naive L2
ENSG00000139343 SNRPF 364598 sc-eQTL 3.43e-01 0.0493 0.0518 0.585 CD4_Naive L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 7.96e-01 0.0166 0.0639 0.585 CD4_Naive L2
ENSG00000059758 CDK17 -176954 sc-eQTL 9.07e-01 -0.0046 0.0395 0.585 CD4_TCM L2
ENSG00000111142 METAP2 750006 sc-eQTL 5.36e-01 0.0416 0.0671 0.585 CD4_TCM L2
ENSG00000111144 LTA4H 180006 sc-eQTL 7.62e-01 -0.0203 0.0669 0.585 CD4_TCM L2
ENSG00000111145 ELK3 29151 sc-eQTL 1.41e-03 -0.208 0.0643 0.585 CD4_TCM L2
ENSG00000136014 USP44 672050 sc-eQTL 3.86e-01 0.079 0.0909 0.585 CD4_TCM L2
ENSG00000139343 SNRPF 364598 sc-eQTL 5.52e-01 0.0321 0.054 0.585 CD4_TCM L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 4.71e-01 0.0533 0.0737 0.585 CD4_TCM L2
ENSG00000059758 CDK17 -176954 sc-eQTL 4.45e-01 -0.0376 0.0491 0.585 CD4_TEM L2
ENSG00000111142 METAP2 750006 sc-eQTL 7.28e-01 0.0287 0.0821 0.585 CD4_TEM L2
ENSG00000111144 LTA4H 180006 sc-eQTL 4.77e-01 -0.054 0.0758 0.585 CD4_TEM L2
ENSG00000111145 ELK3 29151 sc-eQTL 2.53e-01 -0.0806 0.0703 0.585 CD4_TEM L2
ENSG00000136014 USP44 672050 sc-eQTL 3.98e-01 -0.0733 0.0866 0.585 CD4_TEM L2
ENSG00000139343 SNRPF 364598 sc-eQTL 7.74e-01 -0.0213 0.0738 0.585 CD4_TEM L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 3.81e-01 0.0767 0.0874 0.585 CD4_TEM L2
ENSG00000059758 CDK17 -176954 sc-eQTL 3.38e-01 0.0453 0.0471 0.585 CD8_CTL L2
ENSG00000111142 METAP2 750006 sc-eQTL 9.13e-01 0.00892 0.0816 0.585 CD8_CTL L2
ENSG00000111144 LTA4H 180006 sc-eQTL 4.27e-01 -0.0677 0.0851 0.585 CD8_CTL L2
ENSG00000111145 ELK3 29151 sc-eQTL 4.39e-01 0.0601 0.0775 0.585 CD8_CTL L2
ENSG00000136014 USP44 672050 sc-eQTL 8.60e-01 0.0153 0.0865 0.585 CD8_CTL L2
ENSG00000139343 SNRPF 364598 sc-eQTL 3.53e-01 0.0663 0.0712 0.585 CD8_CTL L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 3.68e-01 0.0721 0.0799 0.585 CD8_CTL L2
ENSG00000059758 CDK17 -176954 sc-eQTL 3.66e-01 0.0512 0.0565 0.585 CD8_Naive L2
ENSG00000111142 METAP2 750006 sc-eQTL 4.75e-01 0.0538 0.0751 0.585 CD8_Naive L2
ENSG00000111144 LTA4H 180006 sc-eQTL 9.09e-01 -0.00775 0.0678 0.585 CD8_Naive L2
ENSG00000111145 ELK3 29151 sc-eQTL 7.49e-01 0.023 0.0717 0.585 CD8_Naive L2
ENSG00000136014 USP44 672050 sc-eQTL 2.54e-01 -0.086 0.0751 0.585 CD8_Naive L2
ENSG00000139343 SNRPF 364598 sc-eQTL 9.14e-01 0.007 0.0645 0.585 CD8_Naive L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 3.64e-01 -0.0697 0.0766 0.585 CD8_Naive L2
ENSG00000059758 CDK17 -176954 sc-eQTL 4.58e-01 0.0473 0.0635 0.576 CD8_TCM L2
ENSG00000111142 METAP2 750006 sc-eQTL 1.34e-01 -0.142 0.0944 0.576 CD8_TCM L2
ENSG00000111144 LTA4H 180006 sc-eQTL 4.91e-01 -0.0645 0.0934 0.576 CD8_TCM L2
ENSG00000111145 ELK3 29151 sc-eQTL 6.12e-01 0.0402 0.0792 0.576 CD8_TCM L2
ENSG00000136014 USP44 672050 sc-eQTL 5.67e-01 -0.0492 0.0857 0.576 CD8_TCM L2
ENSG00000139343 SNRPF 364598 sc-eQTL 6.16e-01 -0.0457 0.0911 0.576 CD8_TCM L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 1.61e-01 -0.125 0.0889 0.576 CD8_TCM L2
ENSG00000059758 CDK17 -176954 sc-eQTL 1.44e-01 0.11 0.0749 0.594 CD8_TEM L2
ENSG00000111142 METAP2 750006 sc-eQTL 6.69e-02 -0.162 0.0877 0.594 CD8_TEM L2
ENSG00000111144 LTA4H 180006 sc-eQTL 7.07e-01 -0.0347 0.0922 0.594 CD8_TEM L2
ENSG00000111145 ELK3 29151 sc-eQTL 6.93e-01 -0.0358 0.0906 0.594 CD8_TEM L2
ENSG00000136014 USP44 672050 sc-eQTL 4.34e-02 0.155 0.0764 0.594 CD8_TEM L2
ENSG00000139343 SNRPF 364598 sc-eQTL 5.60e-01 -0.0491 0.0842 0.594 CD8_TEM L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 7.14e-02 -0.164 0.0907 0.594 CD8_TEM L2
ENSG00000059758 CDK17 -176954 sc-eQTL 1.67e-02 -0.124 0.0516 0.587 MAIT L2
ENSG00000074527 NTN4 432374 sc-eQTL 6.42e-01 -0.0328 0.0705 0.587 MAIT L2
ENSG00000111142 METAP2 750006 sc-eQTL 5.28e-01 -0.0561 0.0887 0.587 MAIT L2
ENSG00000111144 LTA4H 180006 sc-eQTL 7.95e-01 -0.0211 0.0808 0.587 MAIT L2
ENSG00000111145 ELK3 29151 sc-eQTL 7.57e-01 -0.021 0.0678 0.587 MAIT L2
ENSG00000139343 SNRPF 364598 sc-eQTL 7.42e-01 -0.0259 0.0786 0.587 MAIT L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 4.59e-02 -0.176 0.0874 0.587 MAIT L2
ENSG00000188596 CFAP54 -266045 sc-eQTL 4.81e-01 -0.0617 0.0874 0.587 MAIT L2
ENSG00000059758 CDK17 -176954 sc-eQTL 4.09e-01 -0.0445 0.0539 0.591 NK_CD56bright L2
ENSG00000111142 METAP2 750006 sc-eQTL 8.60e-01 -0.0161 0.0911 0.591 NK_CD56bright L2
ENSG00000111144 LTA4H 180006 sc-eQTL 4.50e-02 -0.159 0.079 0.591 NK_CD56bright L2
ENSG00000111145 ELK3 29151 sc-eQTL 2.68e-01 0.0938 0.0845 0.591 NK_CD56bright L2
ENSG00000139343 SNRPF 364598 sc-eQTL 4.23e-01 0.071 0.0885 0.591 NK_CD56bright L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 3.38e-01 0.0857 0.0892 0.591 NK_CD56bright L2
ENSG00000059758 CDK17 -176954 sc-eQTL 7.74e-02 0.0809 0.0456 0.588 NK_CD56dim L2
ENSG00000111142 METAP2 750006 sc-eQTL 7.78e-01 0.0227 0.0805 0.588 NK_CD56dim L2
ENSG00000111144 LTA4H 180006 sc-eQTL 1.75e-01 -0.112 0.0826 0.588 NK_CD56dim L2
ENSG00000111145 ELK3 29151 sc-eQTL 8.56e-01 0.0134 0.0734 0.588 NK_CD56dim L2
ENSG00000139343 SNRPF 364598 sc-eQTL 9.16e-01 -0.00736 0.0699 0.588 NK_CD56dim L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 5.73e-01 -0.0454 0.0804 0.588 NK_CD56dim L2
ENSG00000059758 CDK17 -176954 sc-eQTL 5.84e-01 -0.0398 0.0725 0.582 NK_HLA L2
ENSG00000111142 METAP2 750006 sc-eQTL 2.85e-01 0.0977 0.0911 0.582 NK_HLA L2
ENSG00000111144 LTA4H 180006 sc-eQTL 4.23e-02 -0.192 0.0941 0.582 NK_HLA L2
ENSG00000111145 ELK3 29151 sc-eQTL 3.57e-01 0.0813 0.088 0.582 NK_HLA L2
ENSG00000139343 SNRPF 364598 sc-eQTL 4.72e-01 0.0662 0.0918 0.582 NK_HLA L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 7.24e-01 -0.0307 0.0869 0.582 NK_HLA L2
ENSG00000059758 CDK17 -176954 sc-eQTL 2.26e-01 0.0609 0.0501 0.588 NK_cytokine L2
ENSG00000111142 METAP2 750006 sc-eQTL 2.49e-01 0.0962 0.0833 0.588 NK_cytokine L2
ENSG00000111144 LTA4H 180006 sc-eQTL 1.08e-01 -0.136 0.0845 0.588 NK_cytokine L2
ENSG00000111145 ELK3 29151 sc-eQTL 9.73e-01 0.00275 0.0814 0.588 NK_cytokine L2
ENSG00000139343 SNRPF 364598 sc-eQTL 5.18e-01 0.0446 0.0689 0.588 NK_cytokine L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 8.72e-02 -0.145 0.0847 0.588 NK_cytokine L2
ENSG00000059758 CDK17 -176954 sc-eQTL 1.79e-01 0.124 0.0913 0.615 PB L2
ENSG00000111142 METAP2 750006 sc-eQTL 7.81e-01 0.03 0.108 0.615 PB L2
ENSG00000111144 LTA4H 180006 sc-eQTL 1.48e-01 -0.117 0.0804 0.615 PB L2
ENSG00000111145 ELK3 29151 sc-eQTL 3.07e-01 0.106 0.104 0.615 PB L2
ENSG00000136014 USP44 672050 sc-eQTL 8.95e-01 0.0127 0.0963 0.615 PB L2
ENSG00000139343 SNRPF 364598 sc-eQTL 7.85e-02 -0.178 0.1 0.615 PB L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 7.86e-01 -0.0328 0.121 0.615 PB L2
ENSG00000059758 CDK17 -176954 sc-eQTL 9.02e-01 -0.0068 0.0554 0.58 Pro_T L2
ENSG00000074527 NTN4 432374 sc-eQTL 5.61e-01 0.0361 0.0621 0.58 Pro_T L2
ENSG00000111142 METAP2 750006 sc-eQTL 4.47e-01 0.0559 0.0733 0.58 Pro_T L2
ENSG00000111144 LTA4H 180006 sc-eQTL 3.87e-01 -0.0633 0.073 0.58 Pro_T L2
ENSG00000111145 ELK3 29151 sc-eQTL 6.61e-01 -0.0388 0.0884 0.58 Pro_T L2
ENSG00000139343 SNRPF 364598 sc-eQTL 2.98e-01 -0.058 0.0556 0.58 Pro_T L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 6.16e-01 -0.0407 0.0809 0.58 Pro_T L2
ENSG00000188596 CFAP54 -266045 sc-eQTL 6.31e-01 0.0315 0.0655 0.58 Pro_T L2
ENSG00000059758 CDK17 -176954 sc-eQTL 2.55e-01 -0.0701 0.0614 0.585 Treg L2
ENSG00000111142 METAP2 750006 sc-eQTL 7.06e-01 0.0316 0.0838 0.585 Treg L2
ENSG00000111144 LTA4H 180006 sc-eQTL 3.50e-01 -0.0729 0.0779 0.585 Treg L2
ENSG00000111145 ELK3 29151 sc-eQTL 8.65e-01 0.0121 0.0707 0.585 Treg L2
ENSG00000136014 USP44 672050 sc-eQTL 6.15e-01 0.0399 0.0793 0.585 Treg L2
ENSG00000139343 SNRPF 364598 sc-eQTL 8.83e-01 0.0121 0.0819 0.585 Treg L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 2.48e-01 -0.105 0.0911 0.585 Treg L2
ENSG00000059758 CDK17 -176954 sc-eQTL 2.77e-01 0.0848 0.0777 0.573 cDC L2
ENSG00000084110 HAL 227161 sc-eQTL 4.87e-01 -0.0564 0.081 0.573 cDC L2
ENSG00000111142 METAP2 750006 sc-eQTL 8.70e-01 -0.0161 0.0979 0.573 cDC L2
ENSG00000111144 LTA4H 180006 sc-eQTL 7.63e-01 -0.021 0.0695 0.573 cDC L2
ENSG00000111145 ELK3 29151 sc-eQTL 7.94e-01 -0.024 0.0917 0.573 cDC L2
ENSG00000139343 SNRPF 364598 sc-eQTL 9.41e-01 0.00571 0.0768 0.573 cDC L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 2.17e-01 -0.116 0.0931 0.573 cDC L2
ENSG00000257715 AC007298.1 198203 sc-eQTL 1.83e-01 -0.105 0.0785 0.573 cDC L2
ENSG00000059758 CDK17 -176954 sc-eQTL 3.11e-01 -0.0673 0.0662 0.585 cMono_IL1B L2
ENSG00000084110 HAL 227161 sc-eQTL 3.21e-03 0.211 0.0709 0.585 cMono_IL1B L2
ENSG00000111142 METAP2 750006 sc-eQTL 5.74e-01 -0.0422 0.075 0.585 cMono_IL1B L2
ENSG00000111144 LTA4H 180006 sc-eQTL 5.02e-02 -0.153 0.0775 0.585 cMono_IL1B L2
ENSG00000111145 ELK3 29151 sc-eQTL 1.03e-01 -0.098 0.0599 0.585 cMono_IL1B L2
ENSG00000139343 SNRPF 364598 sc-eQTL 9.42e-01 -0.00451 0.0621 0.585 cMono_IL1B L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 5.12e-01 -0.0562 0.0855 0.585 cMono_IL1B L2
ENSG00000257715 AC007298.1 198203 sc-eQTL 4.99e-01 -0.054 0.0798 0.585 cMono_IL1B L2
ENSG00000059758 CDK17 -176954 sc-eQTL 1.07e-01 -0.121 0.0747 0.585 cMono_S100A L2
ENSG00000084110 HAL 227161 sc-eQTL 4.12e-02 0.172 0.0836 0.585 cMono_S100A L2
ENSG00000111142 METAP2 750006 sc-eQTL 1.15e-01 0.134 0.0849 0.585 cMono_S100A L2
ENSG00000111144 LTA4H 180006 sc-eQTL 7.00e-02 -0.152 0.0837 0.585 cMono_S100A L2
ENSG00000111145 ELK3 29151 sc-eQTL 8.57e-01 -0.0124 0.0687 0.585 cMono_S100A L2
ENSG00000139343 SNRPF 364598 sc-eQTL 3.14e-01 -0.0684 0.0677 0.585 cMono_S100A L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 9.37e-01 0.00724 0.0916 0.585 cMono_S100A L2
ENSG00000257715 AC007298.1 198203 sc-eQTL 2.90e-01 -0.0912 0.086 0.585 cMono_S100A L2
ENSG00000059758 CDK17 -176954 sc-eQTL 3.12e-01 0.0776 0.0764 0.576 gdT L2
ENSG00000074527 NTN4 432374 sc-eQTL 8.27e-01 -0.0193 0.088 0.576 gdT L2
ENSG00000111142 METAP2 750006 sc-eQTL 5.92e-01 -0.0591 0.11 0.576 gdT L2
ENSG00000111144 LTA4H 180006 sc-eQTL 4.09e-01 0.0948 0.114 0.576 gdT L2
ENSG00000111145 ELK3 29151 sc-eQTL 4.31e-01 0.0837 0.106 0.576 gdT L2
ENSG00000139343 SNRPF 364598 sc-eQTL 1.77e-01 0.138 0.102 0.576 gdT L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 2.77e-01 -0.123 0.113 0.576 gdT L2
ENSG00000188596 CFAP54 -266045 sc-eQTL 5.22e-01 0.0635 0.099 0.576 gdT L2
ENSG00000059758 CDK17 -176954 sc-eQTL 4.09e-02 0.177 0.0861 0.591 intMono L2
ENSG00000084110 HAL 227161 sc-eQTL 8.49e-01 0.0168 0.088 0.591 intMono L2
ENSG00000111142 METAP2 750006 sc-eQTL 5.53e-01 0.0591 0.0995 0.591 intMono L2
ENSG00000111144 LTA4H 180006 sc-eQTL 3.30e-01 -0.0878 0.09 0.591 intMono L2
ENSG00000111145 ELK3 29151 sc-eQTL 5.56e-01 -0.0474 0.0803 0.591 intMono L2
ENSG00000139343 SNRPF 364598 sc-eQTL 1.16e-01 -0.135 0.0854 0.591 intMono L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 7.28e-01 -0.031 0.0893 0.591 intMono L2
ENSG00000257715 AC007298.1 198203 sc-eQTL 2.24e-01 0.109 0.0895 0.591 intMono L2
ENSG00000059758 CDK17 -176954 sc-eQTL 4.50e-01 0.0508 0.0672 0.588 ncMono L2
ENSG00000084110 HAL 227161 sc-eQTL 8.46e-01 0.0146 0.0751 0.588 ncMono L2
ENSG00000111142 METAP2 750006 sc-eQTL 7.77e-01 0.0258 0.0908 0.588 ncMono L2
ENSG00000111144 LTA4H 180006 sc-eQTL 3.83e-01 -0.0732 0.0836 0.588 ncMono L2
ENSG00000111145 ELK3 29151 sc-eQTL 8.48e-01 -0.0138 0.0719 0.588 ncMono L2
ENSG00000139343 SNRPF 364598 sc-eQTL 1.13e-01 -0.116 0.073 0.588 ncMono L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 9.12e-01 0.00862 0.078 0.588 ncMono L2
ENSG00000257715 AC007298.1 198203 sc-eQTL 7.81e-01 0.0248 0.089 0.588 ncMono L2
ENSG00000059758 CDK17 -176954 sc-eQTL 2.56e-01 0.104 0.0913 0.568 pDC L2
ENSG00000084110 HAL 227161 sc-eQTL 6.30e-01 0.0374 0.0774 0.568 pDC L2
ENSG00000111142 METAP2 750006 sc-eQTL 1.60e-01 -0.147 0.104 0.568 pDC L2
ENSG00000111144 LTA4H 180006 sc-eQTL 4.62e-02 -0.172 0.0856 0.568 pDC L2
ENSG00000111145 ELK3 29151 sc-eQTL 2.13e-01 -0.132 0.106 0.568 pDC L2
ENSG00000139343 SNRPF 364598 sc-eQTL 4.50e-01 0.07 0.0924 0.568 pDC L2
ENSG00000139350 NEDD1 -683697 sc-eQTL 5.19e-01 0.066 0.102 0.568 pDC L2
ENSG00000257715 AC007298.1 198203 sc-eQTL 8.19e-01 -0.0201 0.0875 0.568 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -176954 sc-eQTL 3.27e-01 -0.0568 0.0578 0.585 B_Memory LOneK1K
ENSG00000111142 METAP2 750006 sc-eQTL 9.05e-01 0.0096 0.0806 0.585 B_Memory LOneK1K
ENSG00000111144 LTA4H 180006 sc-eQTL 5.37e-01 0.0371 0.0601 0.585 B_Memory LOneK1K
ENSG00000111145 ELK3 29151 sc-eQTL 5.93e-01 -0.0368 0.0687 0.585 B_Memory LOneK1K
ENSG00000136014 USP44 672050 sc-eQTL 4.69e-01 -0.0621 0.0856 0.585 B_Memory LOneK1K
ENSG00000139343 SNRPF 364598 sc-eQTL 7.21e-01 0.0238 0.0666 0.585 B_Memory LOneK1K
ENSG00000139350 NEDD1 -683697 sc-eQTL 1.87e-01 -0.115 0.0871 0.585 B_Memory LOneK1K
ENSG00000059758 CDK17 -176954 sc-eQTL 7.32e-01 -0.0171 0.05 0.585 B_Naive LOneK1K
ENSG00000111142 METAP2 750006 sc-eQTL 2.46e-01 0.0785 0.0675 0.585 B_Naive LOneK1K
ENSG00000111144 LTA4H 180006 sc-eQTL 8.97e-01 0.00731 0.0562 0.585 B_Naive LOneK1K
ENSG00000111145 ELK3 29151 sc-eQTL 7.10e-01 0.0238 0.0639 0.585 B_Naive LOneK1K
ENSG00000136014 USP44 672050 sc-eQTL 9.50e-01 -0.00492 0.0782 0.585 B_Naive LOneK1K
ENSG00000139343 SNRPF 364598 sc-eQTL 4.88e-01 0.0447 0.0643 0.585 B_Naive LOneK1K
ENSG00000139350 NEDD1 -683697 sc-eQTL 5.68e-01 0.0487 0.0852 0.585 B_Naive LOneK1K
ENSG00000059758 CDK17 -176954 sc-eQTL 4.63e-02 -0.118 0.0588 0.585 CD14_Mono LOneK1K
ENSG00000084110 HAL 227161 sc-eQTL 1.01e-02 0.184 0.0708 0.585 CD14_Mono LOneK1K
ENSG00000111142 METAP2 750006 sc-eQTL 3.20e-01 0.0673 0.0676 0.585 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 180006 sc-eQTL 1.04e-01 -0.128 0.0784 0.585 CD14_Mono LOneK1K
ENSG00000111145 ELK3 29151 sc-eQTL 1.36e-01 -0.0849 0.0567 0.585 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 364598 sc-eQTL 5.07e-01 -0.0366 0.055 0.585 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -683697 sc-eQTL 6.84e-01 -0.0352 0.0863 0.585 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 198203 sc-eQTL 3.60e-01 -0.0733 0.0798 0.585 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -176954 sc-eQTL 2.02e-01 0.0789 0.0617 0.591 CD16_Mono LOneK1K
ENSG00000084110 HAL 227161 sc-eQTL 8.32e-01 0.0156 0.0732 0.591 CD16_Mono LOneK1K
ENSG00000111142 METAP2 750006 sc-eQTL 2.32e-01 0.0991 0.0828 0.591 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 180006 sc-eQTL 2.63e-01 -0.0908 0.0809 0.591 CD16_Mono LOneK1K
ENSG00000111145 ELK3 29151 sc-eQTL 3.47e-01 -0.0565 0.0599 0.591 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 364598 sc-eQTL 2.15e-01 -0.0767 0.0617 0.591 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -683697 sc-eQTL 6.63e-01 -0.0346 0.0794 0.591 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 198203 sc-eQTL 9.11e-01 0.00936 0.0841 0.591 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -176954 sc-eQTL 1.46e-01 0.0627 0.0429 0.588 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 750006 sc-eQTL 2.98e-01 0.0684 0.0655 0.588 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 180006 sc-eQTL 4.97e-02 -0.147 0.0743 0.588 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 29151 sc-eQTL 6.10e-01 0.035 0.0686 0.588 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 364598 sc-eQTL 3.60e-01 0.0538 0.0586 0.588 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -683697 sc-eQTL 1.04e-01 -0.119 0.0728 0.588 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111144 LTA4H 180006 eQTL 0.0454 -0.0391 0.0195 0.0 0.0 0.429
ENSG00000111145 ELK3 29151 eQTL 3.19e-10 -0.103 0.0162 0.0665 0.0631 0.429

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 ELK3 29151 2.26e-05 3.1e-05 2.43e-06 1.21e-05 2.42e-06 7.79e-06 2.58e-05 2.45e-06 1.84e-05 7.19e-06 2.37e-05 8.18e-06 3.85e-05 7.48e-06 4.5e-06 8.83e-06 1.02e-05 1.23e-05 4.61e-06 3.72e-06 7.03e-06 1.6e-05 1.87e-05 4.71e-06 2.78e-05 4.86e-06 7.41e-06 5.97e-06 1.82e-05 1.61e-05 1.29e-05 9.78e-07 1.32e-06 3.37e-06 6.76e-06 2.85e-06 1.79e-06 2e-06 2.13e-06 1.34e-06 8.6e-07 3.06e-05 2.24e-06 1.92e-07 8.09e-07 2.12e-06 1.8e-06 7.53e-07 4.43e-07