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Genes within 1Mb (chr12:96223246:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -177234 sc-eQTL 6.06e-01 0.023 0.0444 0.415 B L1
ENSG00000111142 METAP2 749726 sc-eQTL 3.72e-01 -0.0562 0.0628 0.415 B L1
ENSG00000111144 LTA4H 179726 sc-eQTL 7.69e-01 -0.0162 0.0552 0.415 B L1
ENSG00000111145 ELK3 28871 sc-eQTL 7.69e-01 -0.0173 0.0588 0.415 B L1
ENSG00000136014 USP44 671770 sc-eQTL 6.09e-01 0.0371 0.0724 0.415 B L1
ENSG00000139343 SNRPF 364318 sc-eQTL 9.18e-01 -0.00549 0.0534 0.415 B L1
ENSG00000139350 NEDD1 -683977 sc-eQTL 7.62e-01 -0.0237 0.0779 0.415 B L1
ENSG00000059758 CDK17 -177234 sc-eQTL 4.69e-01 0.0267 0.0368 0.415 CD4T L1
ENSG00000111142 METAP2 749726 sc-eQTL 4.54e-01 -0.0385 0.0513 0.415 CD4T L1
ENSG00000111144 LTA4H 179726 sc-eQTL 9.71e-02 0.0837 0.0502 0.415 CD4T L1
ENSG00000111145 ELK3 28871 sc-eQTL 2.85e-01 0.0585 0.0546 0.415 CD4T L1
ENSG00000136014 USP44 671770 sc-eQTL 1.51e-01 0.112 0.0778 0.415 CD4T L1
ENSG00000139343 SNRPF 364318 sc-eQTL 4.76e-01 -0.0341 0.0478 0.415 CD4T L1
ENSG00000139350 NEDD1 -683977 sc-eQTL 6.72e-01 -0.025 0.0589 0.415 CD4T L1
ENSG00000059758 CDK17 -177234 sc-eQTL 3.30e-01 -0.0371 0.038 0.415 CD8T L1
ENSG00000111142 METAP2 749726 sc-eQTL 7.32e-01 -0.021 0.0614 0.415 CD8T L1
ENSG00000111144 LTA4H 179726 sc-eQTL 8.25e-02 0.0708 0.0406 0.415 CD8T L1
ENSG00000111145 ELK3 28871 sc-eQTL 6.24e-01 0.0302 0.0615 0.415 CD8T L1
ENSG00000136014 USP44 671770 sc-eQTL 5.74e-01 0.0393 0.0699 0.415 CD8T L1
ENSG00000139343 SNRPF 364318 sc-eQTL 7.31e-02 -0.0901 0.05 0.415 CD8T L1
ENSG00000139350 NEDD1 -683977 sc-eQTL 1.97e-01 0.0864 0.0667 0.415 CD8T L1
ENSG00000059758 CDK17 -177234 sc-eQTL 1.81e-01 -0.0953 0.0711 0.419 DC L1
ENSG00000084110 HAL 226881 sc-eQTL 3.98e-01 -0.0687 0.0811 0.419 DC L1
ENSG00000111142 METAP2 749726 sc-eQTL 6.02e-01 0.0468 0.0895 0.419 DC L1
ENSG00000111144 LTA4H 179726 sc-eQTL 1.75e-01 0.09 0.0662 0.419 DC L1
ENSG00000111145 ELK3 28871 sc-eQTL 7.26e-01 0.0285 0.0814 0.419 DC L1
ENSG00000139343 SNRPF 364318 sc-eQTL 4.61e-01 -0.05 0.0676 0.419 DC L1
ENSG00000139350 NEDD1 -683977 sc-eQTL 9.73e-01 -0.00297 0.0869 0.419 DC L1
ENSG00000257715 AC007298.1 197923 sc-eQTL 2.10e-01 0.0982 0.0782 0.419 DC L1
ENSG00000059758 CDK17 -177234 sc-eQTL 9.88e-02 0.0944 0.0569 0.415 Mono L1
ENSG00000084110 HAL 226881 sc-eQTL 3.85e-03 -0.207 0.0708 0.415 Mono L1
ENSG00000111142 METAP2 749726 sc-eQTL 4.44e-01 -0.0477 0.0623 0.415 Mono L1
ENSG00000111144 LTA4H 179726 sc-eQTL 1.75e-01 0.11 0.0812 0.415 Mono L1
ENSG00000111145 ELK3 28871 sc-eQTL 7.40e-02 0.0976 0.0543 0.415 Mono L1
ENSG00000139343 SNRPF 364318 sc-eQTL 4.05e-01 0.043 0.0515 0.415 Mono L1
ENSG00000139350 NEDD1 -683977 sc-eQTL 9.37e-01 0.00629 0.0792 0.415 Mono L1
ENSG00000257715 AC007298.1 197923 sc-eQTL 5.79e-01 0.0426 0.0768 0.415 Mono L1
ENSG00000059758 CDK17 -177234 sc-eQTL 1.07e-01 -0.0681 0.0421 0.412 NK L1
ENSG00000111142 METAP2 749726 sc-eQTL 4.03e-01 -0.0524 0.0626 0.412 NK L1
ENSG00000111144 LTA4H 179726 sc-eQTL 2.23e-02 0.164 0.071 0.412 NK L1
ENSG00000111145 ELK3 28871 sc-eQTL 3.21e-01 -0.0677 0.0681 0.412 NK L1
ENSG00000139343 SNRPF 364318 sc-eQTL 1.53e-01 -0.0807 0.0563 0.412 NK L1
ENSG00000139350 NEDD1 -683977 sc-eQTL 2.56e-01 0.0813 0.0714 0.412 NK L1
ENSG00000059758 CDK17 -177234 sc-eQTL 9.70e-01 -0.00133 0.0353 0.415 Other_T L1
ENSG00000074527 NTN4 432094 sc-eQTL 1.35e-01 0.0973 0.0649 0.415 Other_T L1
ENSG00000111142 METAP2 749726 sc-eQTL 9.83e-01 0.00148 0.0673 0.415 Other_T L1
ENSG00000111144 LTA4H 179726 sc-eQTL 9.59e-01 -0.00375 0.0737 0.415 Other_T L1
ENSG00000111145 ELK3 28871 sc-eQTL 8.45e-01 0.0113 0.0575 0.415 Other_T L1
ENSG00000139343 SNRPF 364318 sc-eQTL 5.50e-01 0.032 0.0534 0.415 Other_T L1
ENSG00000139350 NEDD1 -683977 sc-eQTL 4.25e-01 0.065 0.0813 0.415 Other_T L1
ENSG00000188596 CFAP54 -266325 sc-eQTL 7.80e-01 0.0235 0.0843 0.415 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -177234 sc-eQTL 1.78e-01 -0.106 0.078 0.426 B_Activated L2
ENSG00000111142 METAP2 749726 sc-eQTL 3.62e-01 -0.0899 0.0985 0.426 B_Activated L2
ENSG00000111144 LTA4H 179726 sc-eQTL 8.90e-01 -0.0123 0.0888 0.426 B_Activated L2
ENSG00000111145 ELK3 28871 sc-eQTL 9.24e-01 0.00898 0.0941 0.426 B_Activated L2
ENSG00000136014 USP44 671770 sc-eQTL 7.11e-01 0.0268 0.0722 0.426 B_Activated L2
ENSG00000139343 SNRPF 364318 sc-eQTL 3.62e-01 0.0809 0.0885 0.426 B_Activated L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 1.16e-01 0.146 0.0921 0.426 B_Activated L2
ENSG00000059758 CDK17 -177234 sc-eQTL 9.28e-02 0.116 0.0688 0.416 B_Intermediate L2
ENSG00000111142 METAP2 749726 sc-eQTL 1.63e-01 0.111 0.0791 0.416 B_Intermediate L2
ENSG00000111144 LTA4H 179726 sc-eQTL 9.20e-01 -0.00675 0.0671 0.416 B_Intermediate L2
ENSG00000111145 ELK3 28871 sc-eQTL 4.18e-01 0.0613 0.0755 0.416 B_Intermediate L2
ENSG00000136014 USP44 671770 sc-eQTL 8.56e-01 0.0162 0.0892 0.416 B_Intermediate L2
ENSG00000139343 SNRPF 364318 sc-eQTL 2.68e-01 0.0835 0.0751 0.416 B_Intermediate L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 8.73e-01 0.0141 0.0883 0.416 B_Intermediate L2
ENSG00000059758 CDK17 -177234 sc-eQTL 5.74e-01 0.0381 0.0676 0.418 B_Memory L2
ENSG00000111142 METAP2 749726 sc-eQTL 1.27e-01 -0.134 0.0875 0.418 B_Memory L2
ENSG00000111144 LTA4H 179726 sc-eQTL 5.93e-01 -0.0417 0.0781 0.418 B_Memory L2
ENSG00000111145 ELK3 28871 sc-eQTL 8.70e-01 -0.0126 0.0768 0.418 B_Memory L2
ENSG00000136014 USP44 671770 sc-eQTL 3.81e-01 0.0739 0.0841 0.418 B_Memory L2
ENSG00000139343 SNRPF 364318 sc-eQTL 2.39e-01 -0.0958 0.0811 0.418 B_Memory L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 6.15e-01 0.0453 0.09 0.418 B_Memory L2
ENSG00000059758 CDK17 -177234 sc-eQTL 8.82e-01 -0.00831 0.0558 0.415 B_Naive1 L2
ENSG00000111142 METAP2 749726 sc-eQTL 2.56e-01 -0.082 0.072 0.415 B_Naive1 L2
ENSG00000111144 LTA4H 179726 sc-eQTL 9.20e-01 0.00588 0.0585 0.415 B_Naive1 L2
ENSG00000111145 ELK3 28871 sc-eQTL 3.32e-01 -0.067 0.0689 0.415 B_Naive1 L2
ENSG00000136014 USP44 671770 sc-eQTL 9.00e-01 -0.011 0.0869 0.415 B_Naive1 L2
ENSG00000139343 SNRPF 364318 sc-eQTL 4.48e-01 -0.0511 0.0671 0.415 B_Naive1 L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 8.27e-01 0.0188 0.0862 0.415 B_Naive1 L2
ENSG00000059758 CDK17 -177234 sc-eQTL 5.37e-01 0.0432 0.0699 0.416 B_Naive2 L2
ENSG00000111142 METAP2 749726 sc-eQTL 7.57e-01 -0.0261 0.0844 0.416 B_Naive2 L2
ENSG00000111144 LTA4H 179726 sc-eQTL 9.26e-01 0.00615 0.0663 0.416 B_Naive2 L2
ENSG00000111145 ELK3 28871 sc-eQTL 9.83e-01 0.00165 0.0781 0.416 B_Naive2 L2
ENSG00000136014 USP44 671770 sc-eQTL 2.69e-01 0.0932 0.0841 0.416 B_Naive2 L2
ENSG00000139343 SNRPF 364318 sc-eQTL 2.27e-01 -0.0936 0.0773 0.416 B_Naive2 L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 9.77e-01 0.00263 0.0922 0.416 B_Naive2 L2
ENSG00000059758 CDK17 -177234 sc-eQTL 8.09e-01 0.0159 0.0655 0.42 CD4_CTL L2
ENSG00000111142 METAP2 749726 sc-eQTL 9.47e-01 0.00621 0.0938 0.42 CD4_CTL L2
ENSG00000111144 LTA4H 179726 sc-eQTL 3.92e-03 0.264 0.0905 0.42 CD4_CTL L2
ENSG00000111145 ELK3 28871 sc-eQTL 7.05e-01 0.0355 0.0935 0.42 CD4_CTL L2
ENSG00000136014 USP44 671770 sc-eQTL 9.98e-01 0.00015 0.0747 0.42 CD4_CTL L2
ENSG00000139343 SNRPF 364318 sc-eQTL 2.10e-01 0.102 0.081 0.42 CD4_CTL L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 2.57e-01 0.107 0.0937 0.42 CD4_CTL L2
ENSG00000059758 CDK17 -177234 sc-eQTL 9.53e-01 0.00239 0.0404 0.415 CD4_Naive L2
ENSG00000111142 METAP2 749726 sc-eQTL 6.55e-01 -0.026 0.0582 0.415 CD4_Naive L2
ENSG00000111144 LTA4H 179726 sc-eQTL 1.36e-01 0.0871 0.0581 0.415 CD4_Naive L2
ENSG00000111145 ELK3 28871 sc-eQTL 5.70e-01 -0.0332 0.0584 0.415 CD4_Naive L2
ENSG00000136014 USP44 671770 sc-eQTL 1.23e-01 0.126 0.0815 0.415 CD4_Naive L2
ENSG00000139343 SNRPF 364318 sc-eQTL 3.43e-01 -0.0493 0.0518 0.415 CD4_Naive L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 7.96e-01 -0.0166 0.0639 0.415 CD4_Naive L2
ENSG00000059758 CDK17 -177234 sc-eQTL 9.07e-01 0.0046 0.0395 0.415 CD4_TCM L2
ENSG00000111142 METAP2 749726 sc-eQTL 5.36e-01 -0.0416 0.0671 0.415 CD4_TCM L2
ENSG00000111144 LTA4H 179726 sc-eQTL 7.62e-01 0.0203 0.0669 0.415 CD4_TCM L2
ENSG00000111145 ELK3 28871 sc-eQTL 1.41e-03 0.208 0.0643 0.415 CD4_TCM L2
ENSG00000136014 USP44 671770 sc-eQTL 3.86e-01 -0.079 0.0909 0.415 CD4_TCM L2
ENSG00000139343 SNRPF 364318 sc-eQTL 5.52e-01 -0.0321 0.054 0.415 CD4_TCM L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 4.71e-01 -0.0533 0.0737 0.415 CD4_TCM L2
ENSG00000059758 CDK17 -177234 sc-eQTL 4.45e-01 0.0376 0.0491 0.415 CD4_TEM L2
ENSG00000111142 METAP2 749726 sc-eQTL 7.28e-01 -0.0287 0.0821 0.415 CD4_TEM L2
ENSG00000111144 LTA4H 179726 sc-eQTL 4.77e-01 0.054 0.0758 0.415 CD4_TEM L2
ENSG00000111145 ELK3 28871 sc-eQTL 2.53e-01 0.0806 0.0703 0.415 CD4_TEM L2
ENSG00000136014 USP44 671770 sc-eQTL 3.98e-01 0.0733 0.0866 0.415 CD4_TEM L2
ENSG00000139343 SNRPF 364318 sc-eQTL 7.74e-01 0.0213 0.0738 0.415 CD4_TEM L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 3.81e-01 -0.0767 0.0874 0.415 CD4_TEM L2
ENSG00000059758 CDK17 -177234 sc-eQTL 3.38e-01 -0.0453 0.0471 0.415 CD8_CTL L2
ENSG00000111142 METAP2 749726 sc-eQTL 9.13e-01 -0.00892 0.0816 0.415 CD8_CTL L2
ENSG00000111144 LTA4H 179726 sc-eQTL 4.27e-01 0.0677 0.0851 0.415 CD8_CTL L2
ENSG00000111145 ELK3 28871 sc-eQTL 4.39e-01 -0.0601 0.0775 0.415 CD8_CTL L2
ENSG00000136014 USP44 671770 sc-eQTL 8.60e-01 -0.0153 0.0865 0.415 CD8_CTL L2
ENSG00000139343 SNRPF 364318 sc-eQTL 3.53e-01 -0.0663 0.0712 0.415 CD8_CTL L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 3.68e-01 -0.0721 0.0799 0.415 CD8_CTL L2
ENSG00000059758 CDK17 -177234 sc-eQTL 3.66e-01 -0.0512 0.0565 0.415 CD8_Naive L2
ENSG00000111142 METAP2 749726 sc-eQTL 4.75e-01 -0.0538 0.0751 0.415 CD8_Naive L2
ENSG00000111144 LTA4H 179726 sc-eQTL 9.09e-01 0.00775 0.0678 0.415 CD8_Naive L2
ENSG00000111145 ELK3 28871 sc-eQTL 7.49e-01 -0.023 0.0717 0.415 CD8_Naive L2
ENSG00000136014 USP44 671770 sc-eQTL 2.54e-01 0.086 0.0751 0.415 CD8_Naive L2
ENSG00000139343 SNRPF 364318 sc-eQTL 9.14e-01 -0.007 0.0645 0.415 CD8_Naive L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 3.64e-01 0.0697 0.0766 0.415 CD8_Naive L2
ENSG00000059758 CDK17 -177234 sc-eQTL 4.58e-01 -0.0473 0.0635 0.424 CD8_TCM L2
ENSG00000111142 METAP2 749726 sc-eQTL 1.34e-01 0.142 0.0944 0.424 CD8_TCM L2
ENSG00000111144 LTA4H 179726 sc-eQTL 4.91e-01 0.0645 0.0934 0.424 CD8_TCM L2
ENSG00000111145 ELK3 28871 sc-eQTL 6.12e-01 -0.0402 0.0792 0.424 CD8_TCM L2
ENSG00000136014 USP44 671770 sc-eQTL 5.67e-01 0.0492 0.0857 0.424 CD8_TCM L2
ENSG00000139343 SNRPF 364318 sc-eQTL 6.16e-01 0.0457 0.0911 0.424 CD8_TCM L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 1.61e-01 0.125 0.0889 0.424 CD8_TCM L2
ENSG00000059758 CDK17 -177234 sc-eQTL 1.44e-01 -0.11 0.0749 0.406 CD8_TEM L2
ENSG00000111142 METAP2 749726 sc-eQTL 6.69e-02 0.162 0.0877 0.406 CD8_TEM L2
ENSG00000111144 LTA4H 179726 sc-eQTL 7.07e-01 0.0347 0.0922 0.406 CD8_TEM L2
ENSG00000111145 ELK3 28871 sc-eQTL 6.93e-01 0.0358 0.0906 0.406 CD8_TEM L2
ENSG00000136014 USP44 671770 sc-eQTL 4.34e-02 -0.155 0.0764 0.406 CD8_TEM L2
ENSG00000139343 SNRPF 364318 sc-eQTL 5.60e-01 0.0491 0.0842 0.406 CD8_TEM L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 7.14e-02 0.164 0.0907 0.406 CD8_TEM L2
ENSG00000059758 CDK17 -177234 sc-eQTL 1.67e-02 0.124 0.0516 0.413 MAIT L2
ENSG00000074527 NTN4 432094 sc-eQTL 6.42e-01 0.0328 0.0705 0.413 MAIT L2
ENSG00000111142 METAP2 749726 sc-eQTL 5.28e-01 0.0561 0.0887 0.413 MAIT L2
ENSG00000111144 LTA4H 179726 sc-eQTL 7.95e-01 0.0211 0.0808 0.413 MAIT L2
ENSG00000111145 ELK3 28871 sc-eQTL 7.57e-01 0.021 0.0678 0.413 MAIT L2
ENSG00000139343 SNRPF 364318 sc-eQTL 7.42e-01 0.0259 0.0786 0.413 MAIT L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 4.59e-02 0.176 0.0874 0.413 MAIT L2
ENSG00000188596 CFAP54 -266325 sc-eQTL 4.81e-01 0.0617 0.0874 0.413 MAIT L2
ENSG00000059758 CDK17 -177234 sc-eQTL 4.09e-01 0.0445 0.0539 0.409 NK_CD56bright L2
ENSG00000111142 METAP2 749726 sc-eQTL 8.60e-01 0.0161 0.0911 0.409 NK_CD56bright L2
ENSG00000111144 LTA4H 179726 sc-eQTL 4.50e-02 0.159 0.079 0.409 NK_CD56bright L2
ENSG00000111145 ELK3 28871 sc-eQTL 2.68e-01 -0.0938 0.0845 0.409 NK_CD56bright L2
ENSG00000139343 SNRPF 364318 sc-eQTL 4.23e-01 -0.071 0.0885 0.409 NK_CD56bright L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 3.38e-01 -0.0857 0.0892 0.409 NK_CD56bright L2
ENSG00000059758 CDK17 -177234 sc-eQTL 7.74e-02 -0.0809 0.0456 0.412 NK_CD56dim L2
ENSG00000111142 METAP2 749726 sc-eQTL 7.78e-01 -0.0227 0.0805 0.412 NK_CD56dim L2
ENSG00000111144 LTA4H 179726 sc-eQTL 1.75e-01 0.112 0.0826 0.412 NK_CD56dim L2
ENSG00000111145 ELK3 28871 sc-eQTL 8.56e-01 -0.0134 0.0734 0.412 NK_CD56dim L2
ENSG00000139343 SNRPF 364318 sc-eQTL 9.16e-01 0.00736 0.0699 0.412 NK_CD56dim L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 5.73e-01 0.0454 0.0804 0.412 NK_CD56dim L2
ENSG00000059758 CDK17 -177234 sc-eQTL 5.84e-01 0.0398 0.0725 0.418 NK_HLA L2
ENSG00000111142 METAP2 749726 sc-eQTL 2.85e-01 -0.0977 0.0911 0.418 NK_HLA L2
ENSG00000111144 LTA4H 179726 sc-eQTL 4.23e-02 0.192 0.0941 0.418 NK_HLA L2
ENSG00000111145 ELK3 28871 sc-eQTL 3.57e-01 -0.0813 0.088 0.418 NK_HLA L2
ENSG00000139343 SNRPF 364318 sc-eQTL 4.72e-01 -0.0662 0.0918 0.418 NK_HLA L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 7.24e-01 0.0307 0.0869 0.418 NK_HLA L2
ENSG00000059758 CDK17 -177234 sc-eQTL 2.26e-01 -0.0609 0.0501 0.412 NK_cytokine L2
ENSG00000111142 METAP2 749726 sc-eQTL 2.49e-01 -0.0962 0.0833 0.412 NK_cytokine L2
ENSG00000111144 LTA4H 179726 sc-eQTL 1.08e-01 0.136 0.0845 0.412 NK_cytokine L2
ENSG00000111145 ELK3 28871 sc-eQTL 9.73e-01 -0.00275 0.0814 0.412 NK_cytokine L2
ENSG00000139343 SNRPF 364318 sc-eQTL 5.18e-01 -0.0446 0.0689 0.412 NK_cytokine L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 8.72e-02 0.145 0.0847 0.412 NK_cytokine L2
ENSG00000059758 CDK17 -177234 sc-eQTL 1.79e-01 -0.124 0.0913 0.385 PB L2
ENSG00000111142 METAP2 749726 sc-eQTL 7.81e-01 -0.03 0.108 0.385 PB L2
ENSG00000111144 LTA4H 179726 sc-eQTL 1.48e-01 0.117 0.0804 0.385 PB L2
ENSG00000111145 ELK3 28871 sc-eQTL 3.07e-01 -0.106 0.104 0.385 PB L2
ENSG00000136014 USP44 671770 sc-eQTL 8.95e-01 -0.0127 0.0963 0.385 PB L2
ENSG00000139343 SNRPF 364318 sc-eQTL 7.85e-02 0.178 0.1 0.385 PB L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 7.86e-01 0.0328 0.121 0.385 PB L2
ENSG00000059758 CDK17 -177234 sc-eQTL 9.02e-01 0.0068 0.0554 0.42 Pro_T L2
ENSG00000074527 NTN4 432094 sc-eQTL 5.61e-01 -0.0361 0.0621 0.42 Pro_T L2
ENSG00000111142 METAP2 749726 sc-eQTL 4.47e-01 -0.0559 0.0733 0.42 Pro_T L2
ENSG00000111144 LTA4H 179726 sc-eQTL 3.87e-01 0.0633 0.073 0.42 Pro_T L2
ENSG00000111145 ELK3 28871 sc-eQTL 6.61e-01 0.0388 0.0884 0.42 Pro_T L2
ENSG00000139343 SNRPF 364318 sc-eQTL 2.98e-01 0.058 0.0556 0.42 Pro_T L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 6.16e-01 0.0407 0.0809 0.42 Pro_T L2
ENSG00000188596 CFAP54 -266325 sc-eQTL 6.31e-01 -0.0315 0.0655 0.42 Pro_T L2
ENSG00000059758 CDK17 -177234 sc-eQTL 2.55e-01 0.0701 0.0614 0.415 Treg L2
ENSG00000111142 METAP2 749726 sc-eQTL 7.06e-01 -0.0316 0.0838 0.415 Treg L2
ENSG00000111144 LTA4H 179726 sc-eQTL 3.50e-01 0.0729 0.0779 0.415 Treg L2
ENSG00000111145 ELK3 28871 sc-eQTL 8.65e-01 -0.0121 0.0707 0.415 Treg L2
ENSG00000136014 USP44 671770 sc-eQTL 6.15e-01 -0.0399 0.0793 0.415 Treg L2
ENSG00000139343 SNRPF 364318 sc-eQTL 8.83e-01 -0.0121 0.0819 0.415 Treg L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 2.48e-01 0.105 0.0911 0.415 Treg L2
ENSG00000059758 CDK17 -177234 sc-eQTL 2.77e-01 -0.0848 0.0777 0.427 cDC L2
ENSG00000084110 HAL 226881 sc-eQTL 4.87e-01 0.0564 0.081 0.427 cDC L2
ENSG00000111142 METAP2 749726 sc-eQTL 8.70e-01 0.0161 0.0979 0.427 cDC L2
ENSG00000111144 LTA4H 179726 sc-eQTL 7.63e-01 0.021 0.0695 0.427 cDC L2
ENSG00000111145 ELK3 28871 sc-eQTL 7.94e-01 0.024 0.0917 0.427 cDC L2
ENSG00000139343 SNRPF 364318 sc-eQTL 9.41e-01 -0.00571 0.0768 0.427 cDC L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 2.17e-01 0.116 0.0931 0.427 cDC L2
ENSG00000257715 AC007298.1 197923 sc-eQTL 1.83e-01 0.105 0.0785 0.427 cDC L2
ENSG00000059758 CDK17 -177234 sc-eQTL 3.11e-01 0.0673 0.0662 0.415 cMono_IL1B L2
ENSG00000084110 HAL 226881 sc-eQTL 3.21e-03 -0.211 0.0709 0.415 cMono_IL1B L2
ENSG00000111142 METAP2 749726 sc-eQTL 5.74e-01 0.0422 0.075 0.415 cMono_IL1B L2
ENSG00000111144 LTA4H 179726 sc-eQTL 5.02e-02 0.153 0.0775 0.415 cMono_IL1B L2
ENSG00000111145 ELK3 28871 sc-eQTL 1.03e-01 0.098 0.0599 0.415 cMono_IL1B L2
ENSG00000139343 SNRPF 364318 sc-eQTL 9.42e-01 0.00451 0.0621 0.415 cMono_IL1B L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 5.12e-01 0.0562 0.0855 0.415 cMono_IL1B L2
ENSG00000257715 AC007298.1 197923 sc-eQTL 4.99e-01 0.054 0.0798 0.415 cMono_IL1B L2
ENSG00000059758 CDK17 -177234 sc-eQTL 1.07e-01 0.121 0.0747 0.415 cMono_S100A L2
ENSG00000084110 HAL 226881 sc-eQTL 4.12e-02 -0.172 0.0836 0.415 cMono_S100A L2
ENSG00000111142 METAP2 749726 sc-eQTL 1.15e-01 -0.134 0.0849 0.415 cMono_S100A L2
ENSG00000111144 LTA4H 179726 sc-eQTL 7.00e-02 0.152 0.0837 0.415 cMono_S100A L2
ENSG00000111145 ELK3 28871 sc-eQTL 8.57e-01 0.0124 0.0687 0.415 cMono_S100A L2
ENSG00000139343 SNRPF 364318 sc-eQTL 3.14e-01 0.0684 0.0677 0.415 cMono_S100A L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 9.37e-01 -0.00724 0.0916 0.415 cMono_S100A L2
ENSG00000257715 AC007298.1 197923 sc-eQTL 2.90e-01 0.0912 0.086 0.415 cMono_S100A L2
ENSG00000059758 CDK17 -177234 sc-eQTL 3.12e-01 -0.0776 0.0764 0.424 gdT L2
ENSG00000074527 NTN4 432094 sc-eQTL 8.27e-01 0.0193 0.088 0.424 gdT L2
ENSG00000111142 METAP2 749726 sc-eQTL 5.92e-01 0.0591 0.11 0.424 gdT L2
ENSG00000111144 LTA4H 179726 sc-eQTL 4.09e-01 -0.0948 0.114 0.424 gdT L2
ENSG00000111145 ELK3 28871 sc-eQTL 4.31e-01 -0.0837 0.106 0.424 gdT L2
ENSG00000139343 SNRPF 364318 sc-eQTL 1.77e-01 -0.138 0.102 0.424 gdT L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 2.77e-01 0.123 0.113 0.424 gdT L2
ENSG00000188596 CFAP54 -266325 sc-eQTL 5.22e-01 -0.0635 0.099 0.424 gdT L2
ENSG00000059758 CDK17 -177234 sc-eQTL 4.09e-02 -0.177 0.0861 0.409 intMono L2
ENSG00000084110 HAL 226881 sc-eQTL 8.49e-01 -0.0168 0.088 0.409 intMono L2
ENSG00000111142 METAP2 749726 sc-eQTL 5.53e-01 -0.0591 0.0995 0.409 intMono L2
ENSG00000111144 LTA4H 179726 sc-eQTL 3.30e-01 0.0878 0.09 0.409 intMono L2
ENSG00000111145 ELK3 28871 sc-eQTL 5.56e-01 0.0474 0.0803 0.409 intMono L2
ENSG00000139343 SNRPF 364318 sc-eQTL 1.16e-01 0.135 0.0854 0.409 intMono L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 7.28e-01 0.031 0.0893 0.409 intMono L2
ENSG00000257715 AC007298.1 197923 sc-eQTL 2.24e-01 -0.109 0.0895 0.409 intMono L2
ENSG00000059758 CDK17 -177234 sc-eQTL 4.50e-01 -0.0508 0.0672 0.412 ncMono L2
ENSG00000084110 HAL 226881 sc-eQTL 8.46e-01 -0.0146 0.0751 0.412 ncMono L2
ENSG00000111142 METAP2 749726 sc-eQTL 7.77e-01 -0.0258 0.0908 0.412 ncMono L2
ENSG00000111144 LTA4H 179726 sc-eQTL 3.83e-01 0.0732 0.0836 0.412 ncMono L2
ENSG00000111145 ELK3 28871 sc-eQTL 8.48e-01 0.0138 0.0719 0.412 ncMono L2
ENSG00000139343 SNRPF 364318 sc-eQTL 1.13e-01 0.116 0.073 0.412 ncMono L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 9.12e-01 -0.00862 0.078 0.412 ncMono L2
ENSG00000257715 AC007298.1 197923 sc-eQTL 7.81e-01 -0.0248 0.089 0.412 ncMono L2
ENSG00000059758 CDK17 -177234 sc-eQTL 2.56e-01 -0.104 0.0913 0.432 pDC L2
ENSG00000084110 HAL 226881 sc-eQTL 6.30e-01 -0.0374 0.0774 0.432 pDC L2
ENSG00000111142 METAP2 749726 sc-eQTL 1.60e-01 0.147 0.104 0.432 pDC L2
ENSG00000111144 LTA4H 179726 sc-eQTL 4.62e-02 0.172 0.0856 0.432 pDC L2
ENSG00000111145 ELK3 28871 sc-eQTL 2.13e-01 0.132 0.106 0.432 pDC L2
ENSG00000139343 SNRPF 364318 sc-eQTL 4.50e-01 -0.07 0.0924 0.432 pDC L2
ENSG00000139350 NEDD1 -683977 sc-eQTL 5.19e-01 -0.066 0.102 0.432 pDC L2
ENSG00000257715 AC007298.1 197923 sc-eQTL 8.19e-01 0.0201 0.0875 0.432 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -177234 sc-eQTL 3.27e-01 0.0568 0.0578 0.415 B_Memory LOneK1K
ENSG00000111142 METAP2 749726 sc-eQTL 9.05e-01 -0.0096 0.0806 0.415 B_Memory LOneK1K
ENSG00000111144 LTA4H 179726 sc-eQTL 5.37e-01 -0.0371 0.0601 0.415 B_Memory LOneK1K
ENSG00000111145 ELK3 28871 sc-eQTL 5.93e-01 0.0368 0.0687 0.415 B_Memory LOneK1K
ENSG00000136014 USP44 671770 sc-eQTL 4.69e-01 0.0621 0.0856 0.415 B_Memory LOneK1K
ENSG00000139343 SNRPF 364318 sc-eQTL 7.21e-01 -0.0238 0.0666 0.415 B_Memory LOneK1K
ENSG00000139350 NEDD1 -683977 sc-eQTL 1.87e-01 0.115 0.0871 0.415 B_Memory LOneK1K
ENSG00000059758 CDK17 -177234 sc-eQTL 7.32e-01 0.0171 0.05 0.415 B_Naive LOneK1K
ENSG00000111142 METAP2 749726 sc-eQTL 2.46e-01 -0.0785 0.0675 0.415 B_Naive LOneK1K
ENSG00000111144 LTA4H 179726 sc-eQTL 8.97e-01 -0.00731 0.0562 0.415 B_Naive LOneK1K
ENSG00000111145 ELK3 28871 sc-eQTL 7.10e-01 -0.0238 0.0639 0.415 B_Naive LOneK1K
ENSG00000136014 USP44 671770 sc-eQTL 9.50e-01 0.00492 0.0782 0.415 B_Naive LOneK1K
ENSG00000139343 SNRPF 364318 sc-eQTL 4.88e-01 -0.0447 0.0643 0.415 B_Naive LOneK1K
ENSG00000139350 NEDD1 -683977 sc-eQTL 5.68e-01 -0.0487 0.0852 0.415 B_Naive LOneK1K
ENSG00000059758 CDK17 -177234 sc-eQTL 4.63e-02 0.118 0.0588 0.415 CD14_Mono LOneK1K
ENSG00000084110 HAL 226881 sc-eQTL 1.01e-02 -0.184 0.0708 0.415 CD14_Mono LOneK1K
ENSG00000111142 METAP2 749726 sc-eQTL 3.20e-01 -0.0673 0.0676 0.415 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 179726 sc-eQTL 1.04e-01 0.128 0.0784 0.415 CD14_Mono LOneK1K
ENSG00000111145 ELK3 28871 sc-eQTL 1.36e-01 0.0849 0.0567 0.415 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 364318 sc-eQTL 5.07e-01 0.0366 0.055 0.415 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -683977 sc-eQTL 6.84e-01 0.0352 0.0863 0.415 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 197923 sc-eQTL 3.60e-01 0.0733 0.0798 0.415 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -177234 sc-eQTL 2.02e-01 -0.0789 0.0617 0.409 CD16_Mono LOneK1K
ENSG00000084110 HAL 226881 sc-eQTL 8.32e-01 -0.0156 0.0732 0.409 CD16_Mono LOneK1K
ENSG00000111142 METAP2 749726 sc-eQTL 2.32e-01 -0.0991 0.0828 0.409 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 179726 sc-eQTL 2.63e-01 0.0908 0.0809 0.409 CD16_Mono LOneK1K
ENSG00000111145 ELK3 28871 sc-eQTL 3.47e-01 0.0565 0.0599 0.409 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 364318 sc-eQTL 2.15e-01 0.0767 0.0617 0.409 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -683977 sc-eQTL 6.63e-01 0.0346 0.0794 0.409 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 197923 sc-eQTL 9.11e-01 -0.00936 0.0841 0.409 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -177234 sc-eQTL 1.46e-01 -0.0627 0.0429 0.412 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 749726 sc-eQTL 2.98e-01 -0.0684 0.0655 0.412 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 179726 sc-eQTL 4.97e-02 0.147 0.0743 0.412 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 28871 sc-eQTL 6.10e-01 -0.035 0.0686 0.412 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 364318 sc-eQTL 3.60e-01 -0.0538 0.0586 0.412 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -683977 sc-eQTL 1.04e-01 0.119 0.0728 0.412 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111144 LTA4H 179726 eQTL 0.0428 0.0398 0.0196 0.0 0.0 0.427
ENSG00000111145 ELK3 28871 eQTL 2.44e-10 0.104 0.0163 0.0725 0.0677 0.427

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 ELK3 28871 4.42e-05 1.48e-05 2.57e-06 7.53e-06 2.39e-06 9.8e-06 2.03e-05 1.85e-06 1.31e-05 6.68e-06 1.52e-05 6.06e-06 2.41e-05 4.51e-06 3.8e-06 8.14e-06 6.37e-06 1.17e-05 3.64e-06 2.83e-06 6.85e-06 1.55e-05 1.25e-05 3.73e-06 2.14e-05 4.45e-06 6.66e-06 5.03e-06 1.48e-05 1.14e-05 8.77e-06 1.07e-06 1.24e-06 3.36e-06 4.81e-06 2.7e-06 1.76e-06 1.89e-06 2e-06 9.97e-07 9.55e-07 1.8e-05 2.48e-06 1.65e-07 9.39e-07 1.63e-06 1.93e-06 6.88e-07 4.02e-07