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Genes within 1Mb (chr12:96220447:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -180033 sc-eQTL 7.44e-01 -0.0146 0.0447 0.579 B L1
ENSG00000111142 METAP2 746927 sc-eQTL 2.58e-01 0.0714 0.063 0.579 B L1
ENSG00000111144 LTA4H 176927 sc-eQTL 2.40e-01 0.0653 0.0553 0.579 B L1
ENSG00000111145 ELK3 26072 sc-eQTL 6.46e-01 0.0272 0.0591 0.579 B L1
ENSG00000136014 USP44 668971 sc-eQTL 4.17e-01 -0.0592 0.0727 0.579 B L1
ENSG00000139343 SNRPF 361519 sc-eQTL 7.53e-01 -0.0169 0.0537 0.579 B L1
ENSG00000139350 NEDD1 -686776 sc-eQTL 5.61e-01 0.0456 0.0783 0.579 B L1
ENSG00000059758 CDK17 -180033 sc-eQTL 7.12e-01 -0.0137 0.0369 0.579 CD4T L1
ENSG00000111142 METAP2 746927 sc-eQTL 8.82e-01 0.00764 0.0515 0.579 CD4T L1
ENSG00000111144 LTA4H 176927 sc-eQTL 1.08e-02 -0.128 0.0499 0.579 CD4T L1
ENSG00000111145 ELK3 26072 sc-eQTL 1.15e-01 -0.0864 0.0546 0.579 CD4T L1
ENSG00000136014 USP44 668971 sc-eQTL 2.25e-02 -0.178 0.0774 0.579 CD4T L1
ENSG00000139343 SNRPF 361519 sc-eQTL 6.87e-01 0.0194 0.048 0.579 CD4T L1
ENSG00000139350 NEDD1 -686776 sc-eQTL 4.02e-01 0.0496 0.059 0.579 CD4T L1
ENSG00000059758 CDK17 -180033 sc-eQTL 7.61e-02 0.0674 0.0378 0.579 CD8T L1
ENSG00000111142 METAP2 746927 sc-eQTL 4.16e-01 0.0501 0.0614 0.579 CD8T L1
ENSG00000111144 LTA4H 176927 sc-eQTL 2.19e-01 -0.0503 0.0408 0.579 CD8T L1
ENSG00000111145 ELK3 26072 sc-eQTL 3.26e-01 -0.0606 0.0615 0.579 CD8T L1
ENSG00000136014 USP44 668971 sc-eQTL 6.06e-01 -0.0362 0.07 0.579 CD8T L1
ENSG00000139343 SNRPF 361519 sc-eQTL 5.03e-02 0.0985 0.05 0.579 CD8T L1
ENSG00000139350 NEDD1 -686776 sc-eQTL 2.98e-01 -0.0699 0.0669 0.579 CD8T L1
ENSG00000059758 CDK17 -180033 sc-eQTL 6.83e-02 0.13 0.0711 0.574 DC L1
ENSG00000084110 HAL 224082 sc-eQTL 7.28e-01 0.0284 0.0816 0.574 DC L1
ENSG00000111142 METAP2 746927 sc-eQTL 7.03e-01 -0.0343 0.0899 0.574 DC L1
ENSG00000111144 LTA4H 176927 sc-eQTL 5.03e-01 -0.0447 0.0667 0.574 DC L1
ENSG00000111145 ELK3 26072 sc-eQTL 9.84e-01 -0.0016 0.0818 0.574 DC L1
ENSG00000139343 SNRPF 361519 sc-eQTL 4.61e-01 0.0501 0.0679 0.574 DC L1
ENSG00000139350 NEDD1 -686776 sc-eQTL 6.82e-01 0.0358 0.0872 0.574 DC L1
ENSG00000257715 AC007298.1 195124 sc-eQTL 3.07e-01 -0.0804 0.0786 0.574 DC L1
ENSG00000059758 CDK17 -180033 sc-eQTL 9.93e-02 -0.0945 0.0571 0.579 Mono L1
ENSG00000084110 HAL 224082 sc-eQTL 2.71e-03 0.215 0.0708 0.579 Mono L1
ENSG00000111142 METAP2 746927 sc-eQTL 4.44e-01 0.0479 0.0624 0.579 Mono L1
ENSG00000111144 LTA4H 176927 sc-eQTL 2.92e-01 -0.086 0.0815 0.579 Mono L1
ENSG00000111145 ELK3 26072 sc-eQTL 1.08e-01 -0.088 0.0545 0.579 Mono L1
ENSG00000139343 SNRPF 361519 sc-eQTL 2.73e-01 -0.0567 0.0516 0.579 Mono L1
ENSG00000139350 NEDD1 -686776 sc-eQTL 9.05e-01 -0.00949 0.0794 0.579 Mono L1
ENSG00000257715 AC007298.1 195124 sc-eQTL 9.09e-01 -0.00885 0.077 0.579 Mono L1
ENSG00000059758 CDK17 -180033 sc-eQTL 5.40e-02 0.0812 0.0419 0.582 NK L1
ENSG00000111142 METAP2 746927 sc-eQTL 3.61e-01 0.0572 0.0625 0.582 NK L1
ENSG00000111144 LTA4H 176927 sc-eQTL 2.92e-02 -0.156 0.071 0.582 NK L1
ENSG00000111145 ELK3 26072 sc-eQTL 2.92e-01 0.0718 0.0679 0.582 NK L1
ENSG00000139343 SNRPF 361519 sc-eQTL 2.81e-01 0.0609 0.0563 0.582 NK L1
ENSG00000139350 NEDD1 -686776 sc-eQTL 1.73e-01 -0.0972 0.0712 0.582 NK L1
ENSG00000059758 CDK17 -180033 sc-eQTL 9.88e-01 -0.000529 0.0352 0.579 Other_T L1
ENSG00000074527 NTN4 429295 sc-eQTL 3.01e-01 -0.0674 0.065 0.579 Other_T L1
ENSG00000111142 METAP2 746927 sc-eQTL 5.53e-01 -0.0399 0.0672 0.579 Other_T L1
ENSG00000111144 LTA4H 176927 sc-eQTL 9.45e-01 0.00504 0.0736 0.579 Other_T L1
ENSG00000111145 ELK3 26072 sc-eQTL 8.84e-01 -0.00837 0.0574 0.579 Other_T L1
ENSG00000139343 SNRPF 361519 sc-eQTL 2.94e-01 -0.056 0.0533 0.579 Other_T L1
ENSG00000139350 NEDD1 -686776 sc-eQTL 9.79e-01 0.00209 0.0813 0.579 Other_T L1
ENSG00000188596 CFAP54 -269124 sc-eQTL 9.81e-01 -0.00198 0.0842 0.579 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -180033 sc-eQTL 2.71e-01 0.0856 0.0776 0.571 B_Activated L2
ENSG00000111142 METAP2 746927 sc-eQTL 4.09e-01 0.0809 0.0978 0.571 B_Activated L2
ENSG00000111144 LTA4H 176927 sc-eQTL 7.19e-01 0.0318 0.0881 0.571 B_Activated L2
ENSG00000111145 ELK3 26072 sc-eQTL 7.15e-01 -0.0341 0.0933 0.571 B_Activated L2
ENSG00000136014 USP44 668971 sc-eQTL 6.76e-01 -0.03 0.0716 0.571 B_Activated L2
ENSG00000139343 SNRPF 361519 sc-eQTL 9.25e-01 -0.00829 0.088 0.571 B_Activated L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 4.55e-02 -0.183 0.091 0.571 B_Activated L2
ENSG00000059758 CDK17 -180033 sc-eQTL 2.03e-01 -0.0886 0.0693 0.577 B_Intermediate L2
ENSG00000111142 METAP2 746927 sc-eQTL 3.37e-01 -0.0766 0.0796 0.577 B_Intermediate L2
ENSG00000111144 LTA4H 176927 sc-eQTL 3.16e-01 0.0676 0.0672 0.577 B_Intermediate L2
ENSG00000111145 ELK3 26072 sc-eQTL 2.78e-01 -0.0824 0.0758 0.577 B_Intermediate L2
ENSG00000136014 USP44 668971 sc-eQTL 8.99e-01 0.0114 0.0896 0.577 B_Intermediate L2
ENSG00000139343 SNRPF 361519 sc-eQTL 2.13e-01 -0.0942 0.0754 0.577 B_Intermediate L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 9.40e-01 -0.00671 0.0886 0.577 B_Intermediate L2
ENSG00000059758 CDK17 -180033 sc-eQTL 4.32e-01 -0.0534 0.0678 0.575 B_Memory L2
ENSG00000111142 METAP2 746927 sc-eQTL 6.42e-02 0.163 0.0876 0.575 B_Memory L2
ENSG00000111144 LTA4H 176927 sc-eQTL 1.22e-01 0.121 0.078 0.575 B_Memory L2
ENSG00000111145 ELK3 26072 sc-eQTL 9.68e-01 0.00307 0.0771 0.575 B_Memory L2
ENSG00000136014 USP44 668971 sc-eQTL 3.19e-01 -0.0842 0.0844 0.575 B_Memory L2
ENSG00000139343 SNRPF 361519 sc-eQTL 1.42e-01 0.12 0.0813 0.575 B_Memory L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 4.73e-01 -0.0648 0.0903 0.575 B_Memory L2
ENSG00000059758 CDK17 -180033 sc-eQTL 9.62e-01 0.00264 0.056 0.579 B_Naive1 L2
ENSG00000111142 METAP2 746927 sc-eQTL 2.20e-01 0.0888 0.0722 0.579 B_Naive1 L2
ENSG00000111144 LTA4H 176927 sc-eQTL 5.26e-01 0.0372 0.0586 0.579 B_Naive1 L2
ENSG00000111145 ELK3 26072 sc-eQTL 5.13e-01 0.0454 0.0693 0.579 B_Naive1 L2
ENSG00000136014 USP44 668971 sc-eQTL 5.73e-01 -0.0491 0.0871 0.579 B_Naive1 L2
ENSG00000139343 SNRPF 361519 sc-eQTL 8.07e-01 0.0165 0.0674 0.579 B_Naive1 L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 8.69e-01 0.0143 0.0865 0.579 B_Naive1 L2
ENSG00000059758 CDK17 -180033 sc-eQTL 8.01e-01 0.0178 0.0702 0.577 B_Naive2 L2
ENSG00000111142 METAP2 746927 sc-eQTL 7.88e-01 0.0229 0.0848 0.577 B_Naive2 L2
ENSG00000111144 LTA4H 176927 sc-eQTL 6.11e-01 0.0339 0.0665 0.577 B_Naive2 L2
ENSG00000111145 ELK3 26072 sc-eQTL 3.88e-01 0.0678 0.0784 0.577 B_Naive2 L2
ENSG00000136014 USP44 668971 sc-eQTL 2.23e-01 -0.103 0.0845 0.577 B_Naive2 L2
ENSG00000139343 SNRPF 361519 sc-eQTL 2.54e-01 0.0889 0.0777 0.577 B_Naive2 L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 8.18e-01 0.0213 0.0927 0.577 B_Naive2 L2
ENSG00000059758 CDK17 -180033 sc-eQTL 6.12e-01 0.0332 0.0652 0.575 CD4_CTL L2
ENSG00000111142 METAP2 746927 sc-eQTL 6.74e-01 0.0393 0.0934 0.575 CD4_CTL L2
ENSG00000111144 LTA4H 176927 sc-eQTL 2.92e-02 -0.2 0.0909 0.575 CD4_CTL L2
ENSG00000111145 ELK3 26072 sc-eQTL 8.09e-01 -0.0226 0.0932 0.575 CD4_CTL L2
ENSG00000136014 USP44 668971 sc-eQTL 9.03e-01 0.00907 0.0744 0.575 CD4_CTL L2
ENSG00000139343 SNRPF 361519 sc-eQTL 7.11e-01 -0.03 0.081 0.575 CD4_CTL L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 4.99e-01 -0.0633 0.0935 0.575 CD4_CTL L2
ENSG00000059758 CDK17 -180033 sc-eQTL 7.61e-01 0.0123 0.0406 0.579 CD4_Naive L2
ENSG00000111142 METAP2 746927 sc-eQTL 7.42e-01 -0.0193 0.0585 0.579 CD4_Naive L2
ENSG00000111144 LTA4H 176927 sc-eQTL 3.96e-02 -0.12 0.0581 0.579 CD4_Naive L2
ENSG00000111145 ELK3 26072 sc-eQTL 7.51e-01 -0.0186 0.0587 0.579 CD4_Naive L2
ENSG00000136014 USP44 668971 sc-eQTL 2.29e-02 -0.186 0.0812 0.579 CD4_Naive L2
ENSG00000139343 SNRPF 361519 sc-eQTL 3.67e-01 0.047 0.052 0.579 CD4_Naive L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 4.73e-01 0.0461 0.0641 0.579 CD4_Naive L2
ENSG00000059758 CDK17 -180033 sc-eQTL 7.95e-01 0.0103 0.0395 0.579 CD4_TCM L2
ENSG00000111142 METAP2 746927 sc-eQTL 5.41e-01 0.0412 0.0673 0.579 CD4_TCM L2
ENSG00000111144 LTA4H 176927 sc-eQTL 3.23e-01 -0.0663 0.0669 0.579 CD4_TCM L2
ENSG00000111145 ELK3 26072 sc-eQTL 7.52e-04 -0.22 0.0642 0.579 CD4_TCM L2
ENSG00000136014 USP44 668971 sc-eQTL 6.45e-01 0.042 0.0912 0.579 CD4_TCM L2
ENSG00000139343 SNRPF 361519 sc-eQTL 9.22e-01 0.00531 0.0541 0.579 CD4_TCM L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 6.59e-01 0.0327 0.0739 0.579 CD4_TCM L2
ENSG00000059758 CDK17 -180033 sc-eQTL 3.39e-01 -0.0472 0.0492 0.579 CD4_TEM L2
ENSG00000111142 METAP2 746927 sc-eQTL 9.89e-01 0.00112 0.0824 0.579 CD4_TEM L2
ENSG00000111144 LTA4H 176927 sc-eQTL 7.05e-01 -0.0288 0.0761 0.579 CD4_TEM L2
ENSG00000111145 ELK3 26072 sc-eQTL 1.15e-01 -0.111 0.0703 0.579 CD4_TEM L2
ENSG00000136014 USP44 668971 sc-eQTL 6.29e-01 -0.0421 0.087 0.579 CD4_TEM L2
ENSG00000139343 SNRPF 361519 sc-eQTL 4.55e-01 -0.0553 0.0739 0.579 CD4_TEM L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 8.33e-02 0.152 0.0872 0.579 CD4_TEM L2
ENSG00000059758 CDK17 -180033 sc-eQTL 2.32e-01 0.0569 0.0474 0.579 CD8_CTL L2
ENSG00000111142 METAP2 746927 sc-eQTL 8.29e-01 0.0178 0.0823 0.579 CD8_CTL L2
ENSG00000111144 LTA4H 176927 sc-eQTL 7.21e-01 -0.0307 0.0859 0.579 CD8_CTL L2
ENSG00000111145 ELK3 26072 sc-eQTL 7.52e-01 0.0248 0.0782 0.579 CD8_CTL L2
ENSG00000136014 USP44 668971 sc-eQTL 8.61e-01 0.0153 0.0872 0.579 CD8_CTL L2
ENSG00000139343 SNRPF 361519 sc-eQTL 5.11e-01 0.0473 0.0719 0.579 CD8_CTL L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 5.55e-01 0.0477 0.0806 0.579 CD8_CTL L2
ENSG00000059758 CDK17 -180033 sc-eQTL 1.98e-01 0.0732 0.0566 0.579 CD8_Naive L2
ENSG00000111142 METAP2 746927 sc-eQTL 2.70e-01 0.0833 0.0754 0.579 CD8_Naive L2
ENSG00000111144 LTA4H 176927 sc-eQTL 8.33e-01 -0.0144 0.0681 0.579 CD8_Naive L2
ENSG00000111145 ELK3 26072 sc-eQTL 7.66e-01 -0.0214 0.0721 0.579 CD8_Naive L2
ENSG00000136014 USP44 668971 sc-eQTL 3.71e-01 -0.0678 0.0755 0.579 CD8_Naive L2
ENSG00000139343 SNRPF 361519 sc-eQTL 9.26e-01 0.00606 0.0648 0.579 CD8_Naive L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 6.29e-01 -0.0373 0.0771 0.579 CD8_Naive L2
ENSG00000059758 CDK17 -180033 sc-eQTL 1.50e-01 0.0913 0.0632 0.569 CD8_TCM L2
ENSG00000111142 METAP2 746927 sc-eQTL 2.75e-01 -0.103 0.0945 0.569 CD8_TCM L2
ENSG00000111144 LTA4H 176927 sc-eQTL 7.18e-01 -0.0337 0.0933 0.569 CD8_TCM L2
ENSG00000111145 ELK3 26072 sc-eQTL 3.58e-01 0.0726 0.0789 0.569 CD8_TCM L2
ENSG00000136014 USP44 668971 sc-eQTL 6.71e-01 -0.0364 0.0855 0.569 CD8_TCM L2
ENSG00000139343 SNRPF 361519 sc-eQTL 6.12e-01 -0.0462 0.0909 0.569 CD8_TCM L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 2.33e-01 -0.106 0.0888 0.569 CD8_TCM L2
ENSG00000059758 CDK17 -180033 sc-eQTL 1.50e-01 0.11 0.0758 0.589 CD8_TEM L2
ENSG00000111142 METAP2 746927 sc-eQTL 1.36e-01 -0.133 0.0889 0.589 CD8_TEM L2
ENSG00000111144 LTA4H 176927 sc-eQTL 7.72e-01 0.0271 0.0933 0.589 CD8_TEM L2
ENSG00000111145 ELK3 26072 sc-eQTL 9.21e-01 -0.00914 0.0917 0.589 CD8_TEM L2
ENSG00000136014 USP44 668971 sc-eQTL 1.86e-01 0.103 0.0777 0.589 CD8_TEM L2
ENSG00000139343 SNRPF 361519 sc-eQTL 6.15e-01 -0.0429 0.0852 0.589 CD8_TEM L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 2.93e-01 -0.0972 0.0923 0.589 CD8_TEM L2
ENSG00000059758 CDK17 -180033 sc-eQTL 4.69e-02 -0.104 0.0519 0.58 MAIT L2
ENSG00000074527 NTN4 429295 sc-eQTL 7.72e-01 -0.0205 0.0706 0.58 MAIT L2
ENSG00000111142 METAP2 746927 sc-eQTL 3.88e-01 -0.0768 0.0887 0.58 MAIT L2
ENSG00000111144 LTA4H 176927 sc-eQTL 9.90e-01 0.000965 0.0809 0.58 MAIT L2
ENSG00000111145 ELK3 26072 sc-eQTL 8.16e-01 -0.0159 0.0679 0.58 MAIT L2
ENSG00000139343 SNRPF 361519 sc-eQTL 8.01e-01 -0.0198 0.0787 0.58 MAIT L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 2.69e-01 -0.0977 0.0881 0.58 MAIT L2
ENSG00000188596 CFAP54 -269124 sc-eQTL 7.39e-01 -0.0292 0.0875 0.58 MAIT L2
ENSG00000059758 CDK17 -180033 sc-eQTL 7.04e-01 -0.0206 0.0542 0.587 NK_CD56bright L2
ENSG00000111142 METAP2 746927 sc-eQTL 2.33e-01 -0.109 0.0912 0.587 NK_CD56bright L2
ENSG00000111144 LTA4H 176927 sc-eQTL 2.53e-02 -0.178 0.0792 0.587 NK_CD56bright L2
ENSG00000111145 ELK3 26072 sc-eQTL 1.85e-01 0.113 0.0847 0.587 NK_CD56bright L2
ENSG00000139343 SNRPF 361519 sc-eQTL 2.55e-01 0.101 0.0887 0.587 NK_CD56bright L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 3.85e-01 0.078 0.0896 0.587 NK_CD56bright L2
ENSG00000059758 CDK17 -180033 sc-eQTL 7.02e-02 0.0824 0.0453 0.582 NK_CD56dim L2
ENSG00000111142 METAP2 746927 sc-eQTL 5.09e-01 0.0528 0.0799 0.582 NK_CD56dim L2
ENSG00000111144 LTA4H 176927 sc-eQTL 2.42e-01 -0.0964 0.0822 0.582 NK_CD56dim L2
ENSG00000111145 ELK3 26072 sc-eQTL 8.61e-01 0.0128 0.073 0.582 NK_CD56dim L2
ENSG00000139343 SNRPF 361519 sc-eQTL 9.98e-01 -0.000152 0.0695 0.582 NK_CD56dim L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 4.44e-01 -0.0613 0.0799 0.582 NK_CD56dim L2
ENSG00000059758 CDK17 -180033 sc-eQTL 8.19e-01 -0.0168 0.0734 0.575 NK_HLA L2
ENSG00000111142 METAP2 746927 sc-eQTL 3.05e-01 0.0949 0.0922 0.575 NK_HLA L2
ENSG00000111144 LTA4H 176927 sc-eQTL 6.98e-03 -0.257 0.0944 0.575 NK_HLA L2
ENSG00000111145 ELK3 26072 sc-eQTL 8.45e-01 0.0175 0.0892 0.575 NK_HLA L2
ENSG00000139343 SNRPF 361519 sc-eQTL 8.35e-01 0.0194 0.093 0.575 NK_HLA L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 5.81e-01 -0.0486 0.0879 0.575 NK_HLA L2
ENSG00000059758 CDK17 -180033 sc-eQTL 1.33e-01 0.0754 0.05 0.582 NK_cytokine L2
ENSG00000111142 METAP2 746927 sc-eQTL 2.80e-01 0.0902 0.0832 0.582 NK_cytokine L2
ENSG00000111144 LTA4H 176927 sc-eQTL 8.11e-02 -0.148 0.0843 0.582 NK_cytokine L2
ENSG00000111145 ELK3 26072 sc-eQTL 8.27e-01 0.0178 0.0813 0.582 NK_cytokine L2
ENSG00000139343 SNRPF 361519 sc-eQTL 9.47e-01 0.00459 0.0689 0.582 NK_cytokine L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 1.26e-01 -0.13 0.0847 0.582 NK_cytokine L2
ENSG00000059758 CDK17 -180033 sc-eQTL 2.42e-01 0.108 0.0919 0.596 PB L2
ENSG00000111142 METAP2 746927 sc-eQTL 2.42e-01 0.126 0.107 0.596 PB L2
ENSG00000111144 LTA4H 176927 sc-eQTL 3.91e-01 -0.07 0.0813 0.596 PB L2
ENSG00000111145 ELK3 26072 sc-eQTL 2.99e-01 0.108 0.104 0.596 PB L2
ENSG00000136014 USP44 668971 sc-eQTL 4.60e-01 0.0715 0.0966 0.596 PB L2
ENSG00000139343 SNRPF 361519 sc-eQTL 8.75e-02 -0.174 0.101 0.596 PB L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 8.78e-01 -0.0186 0.121 0.596 PB L2
ENSG00000059758 CDK17 -180033 sc-eQTL 9.84e-01 -0.00114 0.0554 0.574 Pro_T L2
ENSG00000074527 NTN4 429295 sc-eQTL 1.69e-01 0.0854 0.0619 0.574 Pro_T L2
ENSG00000111142 METAP2 746927 sc-eQTL 7.88e-01 0.0198 0.0734 0.574 Pro_T L2
ENSG00000111144 LTA4H 176927 sc-eQTL 5.63e-01 -0.0423 0.0731 0.574 Pro_T L2
ENSG00000111145 ELK3 26072 sc-eQTL 6.38e-01 0.0416 0.0884 0.574 Pro_T L2
ENSG00000139343 SNRPF 361519 sc-eQTL 1.64e-01 -0.0776 0.0555 0.574 Pro_T L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 9.90e-01 -0.000995 0.081 0.574 Pro_T L2
ENSG00000188596 CFAP54 -269124 sc-eQTL 7.94e-01 0.0171 0.0655 0.574 Pro_T L2
ENSG00000059758 CDK17 -180033 sc-eQTL 3.26e-01 -0.0608 0.0618 0.579 Treg L2
ENSG00000111142 METAP2 746927 sc-eQTL 5.31e-01 0.0529 0.0842 0.579 Treg L2
ENSG00000111144 LTA4H 176927 sc-eQTL 1.15e-01 -0.123 0.078 0.579 Treg L2
ENSG00000111145 ELK3 26072 sc-eQTL 5.32e-01 0.0445 0.0711 0.579 Treg L2
ENSG00000136014 USP44 668971 sc-eQTL 9.19e-01 -0.00814 0.0799 0.579 Treg L2
ENSG00000139343 SNRPF 361519 sc-eQTL 4.90e-01 -0.0568 0.0823 0.579 Treg L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 7.78e-01 -0.026 0.0919 0.579 Treg L2
ENSG00000059758 CDK17 -180033 sc-eQTL 2.47e-01 0.0896 0.0771 0.566 cDC L2
ENSG00000084110 HAL 224082 sc-eQTL 3.71e-01 -0.072 0.0803 0.566 cDC L2
ENSG00000111142 METAP2 746927 sc-eQTL 8.87e-01 0.0138 0.0972 0.566 cDC L2
ENSG00000111144 LTA4H 176927 sc-eQTL 8.32e-01 -0.0147 0.069 0.566 cDC L2
ENSG00000111145 ELK3 26072 sc-eQTL 9.81e-01 0.00216 0.091 0.566 cDC L2
ENSG00000139343 SNRPF 361519 sc-eQTL 7.20e-01 0.0274 0.0762 0.566 cDC L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 2.01e-01 -0.119 0.0924 0.566 cDC L2
ENSG00000257715 AC007298.1 195124 sc-eQTL 1.89e-01 -0.103 0.0779 0.566 cDC L2
ENSG00000059758 CDK17 -180033 sc-eQTL 2.32e-01 -0.0798 0.0666 0.579 cMono_IL1B L2
ENSG00000084110 HAL 224082 sc-eQTL 2.80e-03 0.216 0.0714 0.579 cMono_IL1B L2
ENSG00000111142 METAP2 746927 sc-eQTL 5.10e-01 -0.0498 0.0755 0.579 cMono_IL1B L2
ENSG00000111144 LTA4H 176927 sc-eQTL 1.26e-01 -0.12 0.0783 0.579 cMono_IL1B L2
ENSG00000111145 ELK3 26072 sc-eQTL 8.64e-02 -0.104 0.0603 0.579 cMono_IL1B L2
ENSG00000139343 SNRPF 361519 sc-eQTL 7.71e-01 -0.0183 0.0626 0.579 cMono_IL1B L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 3.29e-01 -0.0842 0.086 0.579 cMono_IL1B L2
ENSG00000257715 AC007298.1 195124 sc-eQTL 8.16e-01 -0.0188 0.0804 0.579 cMono_IL1B L2
ENSG00000059758 CDK17 -180033 sc-eQTL 2.47e-01 -0.0884 0.0762 0.579 cMono_S100A L2
ENSG00000084110 HAL 224082 sc-eQTL 1.50e-02 0.207 0.0846 0.579 cMono_S100A L2
ENSG00000111142 METAP2 746927 sc-eQTL 1.45e-01 0.126 0.0863 0.579 cMono_S100A L2
ENSG00000111144 LTA4H 176927 sc-eQTL 1.35e-01 -0.128 0.0852 0.579 cMono_S100A L2
ENSG00000111145 ELK3 26072 sc-eQTL 8.78e-01 0.0107 0.0698 0.579 cMono_S100A L2
ENSG00000139343 SNRPF 361519 sc-eQTL 4.41e-01 -0.0532 0.0689 0.579 cMono_S100A L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 7.09e-01 0.0347 0.0931 0.579 cMono_S100A L2
ENSG00000257715 AC007298.1 195124 sc-eQTL 4.91e-01 -0.0604 0.0875 0.579 cMono_S100A L2
ENSG00000059758 CDK17 -180033 sc-eQTL 8.21e-01 0.0172 0.076 0.573 gdT L2
ENSG00000074527 NTN4 429295 sc-eQTL 6.72e-01 0.037 0.0871 0.573 gdT L2
ENSG00000111142 METAP2 746927 sc-eQTL 8.16e-01 -0.0254 0.109 0.573 gdT L2
ENSG00000111144 LTA4H 176927 sc-eQTL 7.80e-01 0.0317 0.114 0.573 gdT L2
ENSG00000111145 ELK3 26072 sc-eQTL 9.51e-01 0.00644 0.105 0.573 gdT L2
ENSG00000139343 SNRPF 361519 sc-eQTL 5.93e-01 0.0543 0.101 0.573 gdT L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 4.18e-01 -0.0909 0.112 0.573 gdT L2
ENSG00000188596 CFAP54 -269124 sc-eQTL 8.43e-01 0.0194 0.0982 0.573 gdT L2
ENSG00000059758 CDK17 -180033 sc-eQTL 4.30e-02 0.175 0.0859 0.589 intMono L2
ENSG00000084110 HAL 224082 sc-eQTL 7.93e-01 -0.023 0.0877 0.589 intMono L2
ENSG00000111142 METAP2 746927 sc-eQTL 9.38e-01 0.00779 0.0994 0.589 intMono L2
ENSG00000111144 LTA4H 176927 sc-eQTL 4.17e-01 -0.0731 0.0899 0.589 intMono L2
ENSG00000111145 ELK3 26072 sc-eQTL 8.42e-01 -0.016 0.0802 0.589 intMono L2
ENSG00000139343 SNRPF 361519 sc-eQTL 1.86e-01 -0.113 0.0853 0.589 intMono L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 7.41e-01 -0.0295 0.089 0.589 intMono L2
ENSG00000257715 AC007298.1 195124 sc-eQTL 1.65e-01 0.124 0.0891 0.589 intMono L2
ENSG00000059758 CDK17 -180033 sc-eQTL 5.21e-01 0.0431 0.0671 0.581 ncMono L2
ENSG00000084110 HAL 224082 sc-eQTL 7.03e-01 0.0286 0.0749 0.581 ncMono L2
ENSG00000111142 METAP2 746927 sc-eQTL 4.82e-01 0.0638 0.0905 0.581 ncMono L2
ENSG00000111144 LTA4H 176927 sc-eQTL 5.69e-01 -0.0477 0.0835 0.581 ncMono L2
ENSG00000111145 ELK3 26072 sc-eQTL 9.72e-01 0.00256 0.0718 0.581 ncMono L2
ENSG00000139343 SNRPF 361519 sc-eQTL 3.71e-02 -0.152 0.0725 0.581 ncMono L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 9.13e-01 0.00855 0.0779 0.581 ncMono L2
ENSG00000257715 AC007298.1 195124 sc-eQTL 8.81e-01 0.0133 0.0888 0.581 ncMono L2
ENSG00000059758 CDK17 -180033 sc-eQTL 9.24e-02 0.152 0.0899 0.559 pDC L2
ENSG00000084110 HAL 224082 sc-eQTL 9.13e-01 -0.00842 0.0766 0.559 pDC L2
ENSG00000111142 METAP2 746927 sc-eQTL 2.50e-01 -0.119 0.103 0.559 pDC L2
ENSG00000111144 LTA4H 176927 sc-eQTL 4.19e-01 -0.0693 0.0856 0.559 pDC L2
ENSG00000111145 ELK3 26072 sc-eQTL 2.26e-01 -0.127 0.104 0.559 pDC L2
ENSG00000139343 SNRPF 361519 sc-eQTL 7.25e-01 0.0323 0.0915 0.559 pDC L2
ENSG00000139350 NEDD1 -686776 sc-eQTL 1.75e-01 0.137 0.1 0.559 pDC L2
ENSG00000257715 AC007298.1 195124 sc-eQTL 6.04e-01 -0.045 0.0865 0.559 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -180033 sc-eQTL 4.01e-01 -0.049 0.0583 0.579 B_Memory LOneK1K
ENSG00000111142 METAP2 746927 sc-eQTL 5.31e-01 0.0508 0.0811 0.579 B_Memory LOneK1K
ENSG00000111144 LTA4H 176927 sc-eQTL 7.44e-02 0.108 0.0602 0.579 B_Memory LOneK1K
ENSG00000111145 ELK3 26072 sc-eQTL 3.01e-01 -0.0716 0.0691 0.579 B_Memory LOneK1K
ENSG00000136014 USP44 668971 sc-eQTL 5.75e-01 -0.0485 0.0863 0.579 B_Memory LOneK1K
ENSG00000139343 SNRPF 361519 sc-eQTL 5.49e-01 0.0403 0.0671 0.579 B_Memory LOneK1K
ENSG00000139350 NEDD1 -686776 sc-eQTL 1.19e-01 -0.137 0.0876 0.579 B_Memory LOneK1K
ENSG00000059758 CDK17 -180033 sc-eQTL 9.59e-01 -0.00261 0.0505 0.579 B_Naive LOneK1K
ENSG00000111142 METAP2 746927 sc-eQTL 2.09e-01 0.0859 0.0681 0.579 B_Naive LOneK1K
ENSG00000111144 LTA4H 176927 sc-eQTL 3.68e-01 0.0511 0.0566 0.579 B_Naive LOneK1K
ENSG00000111145 ELK3 26072 sc-eQTL 4.51e-01 0.0487 0.0645 0.579 B_Naive LOneK1K
ENSG00000136014 USP44 668971 sc-eQTL 5.55e-01 -0.0466 0.0789 0.579 B_Naive LOneK1K
ENSG00000139343 SNRPF 361519 sc-eQTL 6.52e-01 0.0293 0.065 0.579 B_Naive LOneK1K
ENSG00000139350 NEDD1 -686776 sc-eQTL 3.52e-01 0.0801 0.0859 0.579 B_Naive LOneK1K
ENSG00000059758 CDK17 -180033 sc-eQTL 6.79e-02 -0.109 0.0594 0.579 CD14_Mono LOneK1K
ENSG00000084110 HAL 224082 sc-eQTL 6.34e-03 0.197 0.0713 0.579 CD14_Mono LOneK1K
ENSG00000111142 METAP2 746927 sc-eQTL 4.54e-01 0.0512 0.0682 0.579 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 176927 sc-eQTL 2.18e-01 -0.0979 0.0793 0.579 CD14_Mono LOneK1K
ENSG00000111145 ELK3 26072 sc-eQTL 1.39e-01 -0.085 0.0572 0.579 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 361519 sc-eQTL 5.13e-01 -0.0363 0.0555 0.579 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -686776 sc-eQTL 6.20e-01 -0.0432 0.087 0.579 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 195124 sc-eQTL 7.05e-01 -0.0306 0.0806 0.579 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -180033 sc-eQTL 3.25e-01 0.0606 0.0614 0.584 CD16_Mono LOneK1K
ENSG00000084110 HAL 224082 sc-eQTL 9.03e-01 0.00887 0.0728 0.584 CD16_Mono LOneK1K
ENSG00000111142 METAP2 746927 sc-eQTL 1.73e-01 0.112 0.0822 0.584 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 176927 sc-eQTL 4.69e-01 -0.0585 0.0806 0.584 CD16_Mono LOneK1K
ENSG00000111145 ELK3 26072 sc-eQTL 3.55e-01 -0.0553 0.0596 0.584 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 361519 sc-eQTL 7.09e-02 -0.111 0.0611 0.584 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -686776 sc-eQTL 8.73e-01 -0.0127 0.079 0.584 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 195124 sc-eQTL 6.66e-01 0.0362 0.0836 0.584 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -180033 sc-eQTL 5.28e-02 0.0827 0.0425 0.582 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 746927 sc-eQTL 1.44e-01 0.0951 0.0649 0.582 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 176927 sc-eQTL 5.29e-02 -0.144 0.0739 0.582 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 26072 sc-eQTL 5.89e-01 0.0369 0.0682 0.582 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 361519 sc-eQTL 4.90e-01 0.0403 0.0583 0.582 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -686776 sc-eQTL 6.29e-02 -0.135 0.0722 0.582 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 \N 26072 3.39e-05 3.25e-05 5.66e-06 1.51e-05 5.29e-06 1.29e-05 4.36e-05 4.2e-06 2.88e-05 1.34e-05 3.55e-05 1.48e-05 4.65e-05 1.28e-05 6.45e-06 1.67e-05 1.58e-05 2.35e-05 7.46e-06 6.18e-06 1.32e-05 3.08e-05 2.96e-05 8.13e-06 4.15e-05 7.28e-06 1.25e-05 1.16e-05 3.11e-05 2.4e-05 1.78e-05 1.63e-06 2.41e-06 6.67e-06 1.08e-05 5.17e-06 2.77e-06 2.96e-06 4.35e-06 3.01e-06 1.67e-06 3.81e-05 3.34e-06 3.55e-07 2.18e-06 3.36e-06 3.77e-06 1.41e-06 1.52e-06