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Genes within 1Mb (chr12:96217870:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -182610 sc-eQTL 9.40e-01 -0.00341 0.0455 0.573 B L1
ENSG00000111142 METAP2 744350 sc-eQTL 2.02e-01 0.0821 0.0641 0.573 B L1
ENSG00000111144 LTA4H 174350 sc-eQTL 4.33e-01 0.0444 0.0565 0.573 B L1
ENSG00000111145 ELK3 23495 sc-eQTL 6.74e-01 0.0253 0.0602 0.573 B L1
ENSG00000136014 USP44 666394 sc-eQTL 6.07e-01 -0.0382 0.0742 0.573 B L1
ENSG00000139343 SNRPF 358942 sc-eQTL 9.73e-01 -0.00188 0.0547 0.573 B L1
ENSG00000139350 NEDD1 -689353 sc-eQTL 6.24e-01 0.0392 0.0798 0.573 B L1
ENSG00000059758 CDK17 -182610 sc-eQTL 6.80e-01 -0.0156 0.0376 0.573 CD4T L1
ENSG00000111142 METAP2 744350 sc-eQTL 7.20e-01 0.0188 0.0525 0.573 CD4T L1
ENSG00000111144 LTA4H 174350 sc-eQTL 5.54e-03 -0.142 0.0508 0.573 CD4T L1
ENSG00000111145 ELK3 23495 sc-eQTL 1.30e-01 -0.0846 0.0557 0.573 CD4T L1
ENSG00000136014 USP44 666394 sc-eQTL 6.69e-02 -0.146 0.0792 0.573 CD4T L1
ENSG00000139343 SNRPF 358942 sc-eQTL 6.00e-01 0.0257 0.0489 0.573 CD4T L1
ENSG00000139350 NEDD1 -689353 sc-eQTL 5.36e-01 0.0374 0.0602 0.573 CD4T L1
ENSG00000059758 CDK17 -182610 sc-eQTL 1.29e-01 0.0591 0.0388 0.573 CD8T L1
ENSG00000111142 METAP2 744350 sc-eQTL 3.68e-01 0.0567 0.0628 0.573 CD8T L1
ENSG00000111144 LTA4H 174350 sc-eQTL 1.00e-01 -0.0687 0.0416 0.573 CD8T L1
ENSG00000111145 ELK3 23495 sc-eQTL 4.25e-01 -0.0503 0.0629 0.573 CD8T L1
ENSG00000136014 USP44 666394 sc-eQTL 8.63e-01 -0.0124 0.0717 0.573 CD8T L1
ENSG00000139343 SNRPF 358942 sc-eQTL 2.90e-02 0.112 0.0511 0.573 CD8T L1
ENSG00000139350 NEDD1 -689353 sc-eQTL 3.50e-01 -0.0641 0.0685 0.573 CD8T L1
ENSG00000059758 CDK17 -182610 sc-eQTL 7.86e-02 0.128 0.0726 0.568 DC L1
ENSG00000084110 HAL 221505 sc-eQTL 7.37e-01 0.028 0.0833 0.568 DC L1
ENSG00000111142 METAP2 744350 sc-eQTL 7.98e-01 -0.0235 0.0918 0.568 DC L1
ENSG00000111144 LTA4H 174350 sc-eQTL 3.39e-01 -0.0652 0.068 0.568 DC L1
ENSG00000111145 ELK3 23495 sc-eQTL 9.01e-01 0.0103 0.0835 0.568 DC L1
ENSG00000139343 SNRPF 358942 sc-eQTL 3.61e-01 0.0634 0.0693 0.568 DC L1
ENSG00000139350 NEDD1 -689353 sc-eQTL 6.76e-01 0.0373 0.0891 0.568 DC L1
ENSG00000257715 AC007298.1 192547 sc-eQTL 2.48e-01 -0.093 0.0802 0.568 DC L1
ENSG00000059758 CDK17 -182610 sc-eQTL 1.37e-01 -0.087 0.0583 0.573 Mono L1
ENSG00000084110 HAL 221505 sc-eQTL 1.95e-03 0.226 0.0722 0.573 Mono L1
ENSG00000111142 METAP2 744350 sc-eQTL 2.02e-01 0.0813 0.0636 0.573 Mono L1
ENSG00000111144 LTA4H 174350 sc-eQTL 1.62e-01 -0.116 0.083 0.573 Mono L1
ENSG00000111145 ELK3 23495 sc-eQTL 8.91e-02 -0.095 0.0556 0.573 Mono L1
ENSG00000139343 SNRPF 358942 sc-eQTL 2.99e-01 -0.0548 0.0527 0.573 Mono L1
ENSG00000139350 NEDD1 -689353 sc-eQTL 8.26e-01 -0.0178 0.0811 0.573 Mono L1
ENSG00000257715 AC007298.1 192547 sc-eQTL 7.28e-01 -0.0274 0.0786 0.573 Mono L1
ENSG00000059758 CDK17 -182610 sc-eQTL 1.12e-01 0.0684 0.0428 0.575 NK L1
ENSG00000111142 METAP2 744350 sc-eQTL 3.17e-01 0.0638 0.0636 0.575 NK L1
ENSG00000111144 LTA4H 174350 sc-eQTL 2.98e-02 -0.158 0.0723 0.575 NK L1
ENSG00000111145 ELK3 23495 sc-eQTL 2.61e-01 0.078 0.0692 0.575 NK L1
ENSG00000139343 SNRPF 358942 sc-eQTL 2.70e-01 0.0635 0.0574 0.575 NK L1
ENSG00000139350 NEDD1 -689353 sc-eQTL 2.14e-01 -0.0904 0.0726 0.575 NK L1
ENSG00000059758 CDK17 -182610 sc-eQTL 9.10e-01 0.00409 0.036 0.573 Other_T L1
ENSG00000074527 NTN4 426718 sc-eQTL 1.92e-01 -0.0867 0.0663 0.573 Other_T L1
ENSG00000111142 METAP2 744350 sc-eQTL 5.01e-01 -0.0462 0.0686 0.573 Other_T L1
ENSG00000111144 LTA4H 174350 sc-eQTL 8.31e-01 -0.0161 0.0752 0.573 Other_T L1
ENSG00000111145 ELK3 23495 sc-eQTL 9.98e-01 0.00014 0.0587 0.573 Other_T L1
ENSG00000139343 SNRPF 358942 sc-eQTL 2.53e-01 -0.0624 0.0544 0.573 Other_T L1
ENSG00000139350 NEDD1 -689353 sc-eQTL 8.69e-01 -0.0137 0.083 0.573 Other_T L1
ENSG00000188596 CFAP54 -271701 sc-eQTL 9.46e-01 -0.00581 0.086 0.573 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -182610 sc-eQTL 2.36e-01 0.0948 0.0797 0.564 B_Activated L2
ENSG00000111142 METAP2 744350 sc-eQTL 3.78e-01 0.0887 0.1 0.564 B_Activated L2
ENSG00000111144 LTA4H 174350 sc-eQTL 6.23e-01 0.0446 0.0906 0.564 B_Activated L2
ENSG00000111145 ELK3 23495 sc-eQTL 7.56e-01 -0.0298 0.096 0.564 B_Activated L2
ENSG00000136014 USP44 666394 sc-eQTL 5.60e-01 -0.043 0.0736 0.564 B_Activated L2
ENSG00000139343 SNRPF 358942 sc-eQTL 7.81e-01 -0.0252 0.0904 0.564 B_Activated L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 2.57e-02 -0.21 0.0933 0.564 B_Activated L2
ENSG00000059758 CDK17 -182610 sc-eQTL 2.83e-01 -0.0764 0.0709 0.571 B_Intermediate L2
ENSG00000111142 METAP2 744350 sc-eQTL 3.05e-01 -0.0837 0.0814 0.571 B_Intermediate L2
ENSG00000111144 LTA4H 174350 sc-eQTL 5.70e-01 0.0391 0.0688 0.571 B_Intermediate L2
ENSG00000111145 ELK3 23495 sc-eQTL 1.96e-01 -0.1 0.0774 0.571 B_Intermediate L2
ENSG00000136014 USP44 666394 sc-eQTL 9.88e-01 -0.00137 0.0916 0.571 B_Intermediate L2
ENSG00000139343 SNRPF 358942 sc-eQTL 4.06e-01 -0.0643 0.0772 0.571 B_Intermediate L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 9.68e-01 0.00363 0.0906 0.571 B_Intermediate L2
ENSG00000059758 CDK17 -182610 sc-eQTL 5.58e-01 -0.0407 0.0694 0.569 B_Memory L2
ENSG00000111142 METAP2 744350 sc-eQTL 4.31e-02 0.182 0.0894 0.569 B_Memory L2
ENSG00000111144 LTA4H 174350 sc-eQTL 2.03e-01 0.102 0.0799 0.569 B_Memory L2
ENSG00000111145 ELK3 23495 sc-eQTL 8.15e-01 -0.0185 0.0788 0.569 B_Memory L2
ENSG00000136014 USP44 666394 sc-eQTL 5.25e-01 -0.055 0.0864 0.569 B_Memory L2
ENSG00000139343 SNRPF 358942 sc-eQTL 2.52e-01 0.0956 0.0833 0.569 B_Memory L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 4.30e-01 -0.0729 0.0923 0.569 B_Memory L2
ENSG00000059758 CDK17 -182610 sc-eQTL 8.35e-01 0.0119 0.057 0.573 B_Naive1 L2
ENSG00000111142 METAP2 744350 sc-eQTL 2.38e-01 0.087 0.0735 0.573 B_Naive1 L2
ENSG00000111144 LTA4H 174350 sc-eQTL 7.72e-01 0.0173 0.0597 0.573 B_Naive1 L2
ENSG00000111145 ELK3 23495 sc-eQTL 3.32e-01 0.0684 0.0704 0.573 B_Naive1 L2
ENSG00000136014 USP44 666394 sc-eQTL 8.73e-01 -0.0141 0.0887 0.573 B_Naive1 L2
ENSG00000139343 SNRPF 358942 sc-eQTL 6.43e-01 0.0318 0.0686 0.573 B_Naive1 L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 9.64e-01 0.00394 0.088 0.573 B_Naive1 L2
ENSG00000059758 CDK17 -182610 sc-eQTL 8.90e-01 0.00989 0.0716 0.571 B_Naive2 L2
ENSG00000111142 METAP2 744350 sc-eQTL 6.68e-01 0.0372 0.0864 0.571 B_Naive2 L2
ENSG00000111144 LTA4H 174350 sc-eQTL 8.09e-01 0.0164 0.0678 0.571 B_Naive2 L2
ENSG00000111145 ELK3 23495 sc-eQTL 3.82e-01 0.07 0.0799 0.571 B_Naive2 L2
ENSG00000136014 USP44 666394 sc-eQTL 2.60e-01 -0.0974 0.0862 0.571 B_Naive2 L2
ENSG00000139343 SNRPF 358942 sc-eQTL 1.84e-01 0.105 0.0791 0.571 B_Naive2 L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 9.12e-01 0.0105 0.0945 0.571 B_Naive2 L2
ENSG00000059758 CDK17 -182610 sc-eQTL 8.36e-01 0.0138 0.0667 0.568 CD4_CTL L2
ENSG00000111142 METAP2 744350 sc-eQTL 7.22e-01 0.0339 0.0954 0.568 CD4_CTL L2
ENSG00000111144 LTA4H 174350 sc-eQTL 2.08e-02 -0.216 0.0928 0.568 CD4_CTL L2
ENSG00000111145 ELK3 23495 sc-eQTL 8.76e-01 -0.0149 0.0952 0.568 CD4_CTL L2
ENSG00000136014 USP44 666394 sc-eQTL 7.99e-01 0.0193 0.076 0.568 CD4_CTL L2
ENSG00000139343 SNRPF 358942 sc-eQTL 9.05e-01 -0.00991 0.0828 0.568 CD4_CTL L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 8.05e-01 -0.0237 0.0957 0.568 CD4_CTL L2
ENSG00000059758 CDK17 -182610 sc-eQTL 8.03e-01 0.0103 0.0414 0.573 CD4_Naive L2
ENSG00000111142 METAP2 744350 sc-eQTL 9.59e-01 -0.00307 0.0596 0.573 CD4_Naive L2
ENSG00000111144 LTA4H 174350 sc-eQTL 1.44e-02 -0.146 0.059 0.573 CD4_Naive L2
ENSG00000111145 ELK3 23495 sc-eQTL 9.41e-01 -0.00442 0.0598 0.573 CD4_Naive L2
ENSG00000136014 USP44 666394 sc-eQTL 5.81e-02 -0.158 0.0831 0.573 CD4_Naive L2
ENSG00000139343 SNRPF 358942 sc-eQTL 3.70e-01 0.0477 0.0531 0.573 CD4_Naive L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 6.30e-01 0.0316 0.0654 0.573 CD4_Naive L2
ENSG00000059758 CDK17 -182610 sc-eQTL 7.56e-01 0.0126 0.0404 0.573 CD4_TCM L2
ENSG00000111142 METAP2 744350 sc-eQTL 5.33e-01 0.0429 0.0688 0.573 CD4_TCM L2
ENSG00000111144 LTA4H 174350 sc-eQTL 3.64e-01 -0.0622 0.0684 0.573 CD4_TCM L2
ENSG00000111145 ELK3 23495 sc-eQTL 7.24e-04 -0.225 0.0656 0.573 CD4_TCM L2
ENSG00000136014 USP44 666394 sc-eQTL 5.63e-01 0.054 0.0932 0.573 CD4_TCM L2
ENSG00000139343 SNRPF 358942 sc-eQTL 7.30e-01 0.0191 0.0553 0.573 CD4_TCM L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 5.33e-01 0.0472 0.0755 0.573 CD4_TCM L2
ENSG00000059758 CDK17 -182610 sc-eQTL 2.21e-01 -0.0617 0.0502 0.573 CD4_TEM L2
ENSG00000111142 METAP2 744350 sc-eQTL 9.74e-01 -0.00279 0.0843 0.573 CD4_TEM L2
ENSG00000111144 LTA4H 174350 sc-eQTL 7.88e-01 -0.0209 0.0778 0.573 CD4_TEM L2
ENSG00000111145 ELK3 23495 sc-eQTL 1.50e-01 -0.104 0.072 0.573 CD4_TEM L2
ENSG00000136014 USP44 666394 sc-eQTL 7.39e-01 -0.0296 0.089 0.573 CD4_TEM L2
ENSG00000139343 SNRPF 358942 sc-eQTL 5.14e-01 -0.0494 0.0757 0.573 CD4_TEM L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 1.29e-01 0.136 0.0893 0.573 CD4_TEM L2
ENSG00000059758 CDK17 -182610 sc-eQTL 5.07e-01 0.0323 0.0485 0.573 CD8_CTL L2
ENSG00000111142 METAP2 744350 sc-eQTL 7.04e-01 0.0319 0.084 0.573 CD8_CTL L2
ENSG00000111144 LTA4H 174350 sc-eQTL 3.67e-01 -0.0792 0.0876 0.573 CD8_CTL L2
ENSG00000111145 ELK3 23495 sc-eQTL 8.42e-01 0.0159 0.0799 0.573 CD8_CTL L2
ENSG00000136014 USP44 666394 sc-eQTL 7.91e-01 0.0237 0.089 0.573 CD8_CTL L2
ENSG00000139343 SNRPF 358942 sc-eQTL 2.74e-01 0.0803 0.0732 0.573 CD8_CTL L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 8.15e-01 0.0193 0.0824 0.573 CD8_CTL L2
ENSG00000059758 CDK17 -182610 sc-eQTL 2.98e-01 0.0604 0.0579 0.573 CD8_Naive L2
ENSG00000111142 METAP2 744350 sc-eQTL 2.52e-01 0.0884 0.0769 0.573 CD8_Naive L2
ENSG00000111144 LTA4H 174350 sc-eQTL 7.47e-01 -0.0224 0.0696 0.573 CD8_Naive L2
ENSG00000111145 ELK3 23495 sc-eQTL 8.56e-01 -0.0134 0.0736 0.573 CD8_Naive L2
ENSG00000136014 USP44 666394 sc-eQTL 4.52e-01 -0.0581 0.0772 0.573 CD8_Naive L2
ENSG00000139343 SNRPF 358942 sc-eQTL 7.24e-01 0.0234 0.0662 0.573 CD8_Naive L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 8.04e-01 -0.0196 0.0788 0.573 CD8_Naive L2
ENSG00000059758 CDK17 -182610 sc-eQTL 3.27e-01 0.0637 0.0648 0.562 CD8_TCM L2
ENSG00000111142 METAP2 744350 sc-eQTL 3.27e-01 -0.095 0.0967 0.562 CD8_TCM L2
ENSG00000111144 LTA4H 174350 sc-eQTL 5.86e-01 -0.0521 0.0954 0.562 CD8_TCM L2
ENSG00000111145 ELK3 23495 sc-eQTL 3.16e-01 0.081 0.0806 0.562 CD8_TCM L2
ENSG00000136014 USP44 666394 sc-eQTL 5.59e-01 -0.0512 0.0875 0.562 CD8_TCM L2
ENSG00000139343 SNRPF 358942 sc-eQTL 4.61e-01 -0.0687 0.0929 0.562 CD8_TCM L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 1.66e-01 -0.126 0.0907 0.562 CD8_TCM L2
ENSG00000059758 CDK17 -182610 sc-eQTL 7.33e-02 0.139 0.0772 0.582 CD8_TEM L2
ENSG00000111142 METAP2 744350 sc-eQTL 8.45e-02 -0.157 0.0907 0.582 CD8_TEM L2
ENSG00000111144 LTA4H 174350 sc-eQTL 6.49e-01 0.0435 0.0953 0.582 CD8_TEM L2
ENSG00000111145 ELK3 23495 sc-eQTL 7.86e-01 -0.0255 0.0937 0.582 CD8_TEM L2
ENSG00000136014 USP44 666394 sc-eQTL 9.06e-02 0.135 0.0792 0.582 CD8_TEM L2
ENSG00000139343 SNRPF 358942 sc-eQTL 6.66e-01 -0.0376 0.087 0.582 CD8_TEM L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 2.73e-01 -0.104 0.0942 0.582 CD8_TEM L2
ENSG00000059758 CDK17 -182610 sc-eQTL 1.91e-02 -0.125 0.0529 0.574 MAIT L2
ENSG00000074527 NTN4 426718 sc-eQTL 6.16e-01 -0.0362 0.0722 0.574 MAIT L2
ENSG00000111142 METAP2 744350 sc-eQTL 3.89e-01 -0.0784 0.0908 0.574 MAIT L2
ENSG00000111144 LTA4H 174350 sc-eQTL 9.77e-01 -0.00242 0.0828 0.574 MAIT L2
ENSG00000111145 ELK3 23495 sc-eQTL 8.29e-01 -0.015 0.0694 0.574 MAIT L2
ENSG00000139343 SNRPF 358942 sc-eQTL 5.84e-01 -0.0442 0.0804 0.574 MAIT L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 2.21e-01 -0.111 0.09 0.574 MAIT L2
ENSG00000188596 CFAP54 -271701 sc-eQTL 7.18e-01 -0.0323 0.0895 0.574 MAIT L2
ENSG00000059758 CDK17 -182610 sc-eQTL 5.88e-01 -0.0299 0.0551 0.58 NK_CD56bright L2
ENSG00000111142 METAP2 744350 sc-eQTL 3.13e-01 -0.094 0.0929 0.58 NK_CD56bright L2
ENSG00000111144 LTA4H 174350 sc-eQTL 1.80e-02 -0.192 0.0805 0.58 NK_CD56bright L2
ENSG00000111145 ELK3 23495 sc-eQTL 1.80e-01 0.116 0.0862 0.58 NK_CD56bright L2
ENSG00000139343 SNRPF 358942 sc-eQTL 2.38e-01 0.107 0.0903 0.58 NK_CD56bright L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 5.07e-01 0.0607 0.0913 0.58 NK_CD56bright L2
ENSG00000059758 CDK17 -182610 sc-eQTL 9.98e-02 0.0764 0.0462 0.575 NK_CD56dim L2
ENSG00000111142 METAP2 744350 sc-eQTL 6.34e-01 0.0388 0.0815 0.575 NK_CD56dim L2
ENSG00000111144 LTA4H 174350 sc-eQTL 2.38e-01 -0.0991 0.0838 0.575 NK_CD56dim L2
ENSG00000111145 ELK3 23495 sc-eQTL 9.37e-01 0.00586 0.0744 0.575 NK_CD56dim L2
ENSG00000139343 SNRPF 358942 sc-eQTL 9.90e-01 -0.00091 0.0708 0.575 NK_CD56dim L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 6.87e-01 -0.0329 0.0815 0.575 NK_CD56dim L2
ENSG00000059758 CDK17 -182610 sc-eQTL 6.70e-01 -0.0317 0.0744 0.573 NK_HLA L2
ENSG00000111142 METAP2 744350 sc-eQTL 2.54e-01 0.107 0.0934 0.573 NK_HLA L2
ENSG00000111144 LTA4H 174350 sc-eQTL 1.02e-02 -0.249 0.0959 0.573 NK_HLA L2
ENSG00000111145 ELK3 23495 sc-eQTL 7.63e-01 0.0273 0.0905 0.573 NK_HLA L2
ENSG00000139343 SNRPF 358942 sc-eQTL 8.02e-01 0.0237 0.0943 0.573 NK_HLA L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 3.70e-01 -0.08 0.089 0.573 NK_HLA L2
ENSG00000059758 CDK17 -182610 sc-eQTL 1.89e-01 0.0672 0.0511 0.575 NK_cytokine L2
ENSG00000111142 METAP2 744350 sc-eQTL 2.16e-01 0.105 0.0848 0.575 NK_cytokine L2
ENSG00000111144 LTA4H 174350 sc-eQTL 9.30e-02 -0.145 0.0861 0.575 NK_cytokine L2
ENSG00000111145 ELK3 23495 sc-eQTL 7.75e-01 0.0238 0.083 0.575 NK_cytokine L2
ENSG00000139343 SNRPF 358942 sc-eQTL 7.99e-01 0.0179 0.0703 0.575 NK_cytokine L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 1.84e-01 -0.115 0.0865 0.575 NK_cytokine L2
ENSG00000059758 CDK17 -182610 sc-eQTL 2.48e-01 0.108 0.0931 0.593 PB L2
ENSG00000111142 METAP2 744350 sc-eQTL 1.92e-01 0.143 0.109 0.593 PB L2
ENSG00000111144 LTA4H 174350 sc-eQTL 3.90e-01 -0.0711 0.0823 0.593 PB L2
ENSG00000111145 ELK3 23495 sc-eQTL 2.97e-01 0.11 0.105 0.593 PB L2
ENSG00000136014 USP44 666394 sc-eQTL 3.51e-01 0.0913 0.0976 0.593 PB L2
ENSG00000139343 SNRPF 358942 sc-eQTL 5.98e-02 -0.193 0.102 0.593 PB L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 7.78e-01 -0.0348 0.123 0.593 PB L2
ENSG00000059758 CDK17 -182610 sc-eQTL 8.41e-01 0.0113 0.0565 0.567 Pro_T L2
ENSG00000074527 NTN4 426718 sc-eQTL 2.14e-01 0.0789 0.0632 0.567 Pro_T L2
ENSG00000111142 METAP2 744350 sc-eQTL 5.29e-01 0.0472 0.0749 0.567 Pro_T L2
ENSG00000111144 LTA4H 174350 sc-eQTL 3.86e-01 -0.0647 0.0745 0.567 Pro_T L2
ENSG00000111145 ELK3 23495 sc-eQTL 8.65e-01 0.0154 0.0903 0.567 Pro_T L2
ENSG00000139343 SNRPF 358942 sc-eQTL 1.67e-01 -0.0786 0.0567 0.567 Pro_T L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 5.83e-01 -0.0455 0.0826 0.567 Pro_T L2
ENSG00000188596 CFAP54 -271701 sc-eQTL 8.02e-01 0.0168 0.0669 0.567 Pro_T L2
ENSG00000059758 CDK17 -182610 sc-eQTL 2.62e-01 -0.0711 0.0632 0.573 Treg L2
ENSG00000111142 METAP2 744350 sc-eQTL 3.51e-01 0.0804 0.086 0.573 Treg L2
ENSG00000111144 LTA4H 174350 sc-eQTL 1.25e-01 -0.123 0.0798 0.573 Treg L2
ENSG00000111145 ELK3 23495 sc-eQTL 5.67e-01 0.0417 0.0726 0.573 Treg L2
ENSG00000136014 USP44 666394 sc-eQTL 9.50e-01 0.0051 0.0816 0.573 Treg L2
ENSG00000139343 SNRPF 358942 sc-eQTL 6.73e-01 -0.0356 0.0841 0.573 Treg L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 3.83e-01 -0.082 0.0938 0.573 Treg L2
ENSG00000059758 CDK17 -182610 sc-eQTL 2.39e-01 0.093 0.0788 0.559 cDC L2
ENSG00000084110 HAL 221505 sc-eQTL 3.58e-01 -0.0755 0.082 0.559 cDC L2
ENSG00000111142 METAP2 744350 sc-eQTL 8.04e-01 0.0246 0.0992 0.559 cDC L2
ENSG00000111144 LTA4H 174350 sc-eQTL 6.47e-01 -0.0323 0.0704 0.559 cDC L2
ENSG00000111145 ELK3 23495 sc-eQTL 9.14e-01 0.0101 0.093 0.559 cDC L2
ENSG00000139343 SNRPF 358942 sc-eQTL 6.05e-01 0.0403 0.0778 0.559 cDC L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 2.54e-01 -0.108 0.0945 0.559 cDC L2
ENSG00000257715 AC007298.1 192547 sc-eQTL 1.98e-01 -0.103 0.0796 0.559 cDC L2
ENSG00000059758 CDK17 -182610 sc-eQTL 2.55e-01 -0.0775 0.0679 0.573 cMono_IL1B L2
ENSG00000084110 HAL 221505 sc-eQTL 3.11e-03 0.218 0.0727 0.573 cMono_IL1B L2
ENSG00000111142 METAP2 744350 sc-eQTL 7.93e-01 -0.0203 0.077 0.573 cMono_IL1B L2
ENSG00000111144 LTA4H 174350 sc-eQTL 5.85e-02 -0.151 0.0795 0.573 cMono_IL1B L2
ENSG00000111145 ELK3 23495 sc-eQTL 8.92e-02 -0.105 0.0614 0.573 cMono_IL1B L2
ENSG00000139343 SNRPF 358942 sc-eQTL 7.88e-01 -0.0172 0.0637 0.573 cMono_IL1B L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 3.89e-01 -0.0757 0.0876 0.573 cMono_IL1B L2
ENSG00000257715 AC007298.1 192547 sc-eQTL 6.36e-01 -0.0388 0.0819 0.573 cMono_IL1B L2
ENSG00000059758 CDK17 -182610 sc-eQTL 3.02e-01 -0.0798 0.0771 0.573 cMono_S100A L2
ENSG00000084110 HAL 221505 sc-eQTL 2.27e-02 0.197 0.0857 0.573 cMono_S100A L2
ENSG00000111142 METAP2 744350 sc-eQTL 6.09e-02 0.164 0.0871 0.573 cMono_S100A L2
ENSG00000111144 LTA4H 174350 sc-eQTL 5.69e-02 -0.165 0.0859 0.573 cMono_S100A L2
ENSG00000111145 ELK3 23495 sc-eQTL 9.51e-01 0.00435 0.0706 0.573 cMono_S100A L2
ENSG00000139343 SNRPF 358942 sc-eQTL 3.89e-01 -0.0601 0.0696 0.573 cMono_S100A L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 9.92e-01 0.00098 0.0942 0.573 cMono_S100A L2
ENSG00000257715 AC007298.1 192547 sc-eQTL 3.60e-01 -0.0812 0.0885 0.573 cMono_S100A L2
ENSG00000059758 CDK17 -182610 sc-eQTL 4.46e-01 0.0598 0.0782 0.564 gdT L2
ENSG00000074527 NTN4 426718 sc-eQTL 7.75e-01 0.0258 0.0899 0.564 gdT L2
ENSG00000111142 METAP2 744350 sc-eQTL 3.53e-01 -0.105 0.112 0.564 gdT L2
ENSG00000111144 LTA4H 174350 sc-eQTL 9.53e-01 0.00699 0.117 0.564 gdT L2
ENSG00000111145 ELK3 23495 sc-eQTL 6.08e-01 0.0557 0.108 0.564 gdT L2
ENSG00000139343 SNRPF 358942 sc-eQTL 6.14e-01 0.0528 0.105 0.564 gdT L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 4.48e-01 -0.0877 0.115 0.564 gdT L2
ENSG00000188596 CFAP54 -271701 sc-eQTL 6.97e-01 0.0395 0.101 0.564 gdT L2
ENSG00000059758 CDK17 -182610 sc-eQTL 2.65e-02 0.194 0.087 0.58 intMono L2
ENSG00000084110 HAL 221505 sc-eQTL 8.47e-01 -0.0171 0.089 0.58 intMono L2
ENSG00000111142 METAP2 744350 sc-eQTL 8.99e-01 0.0129 0.101 0.58 intMono L2
ENSG00000111144 LTA4H 174350 sc-eQTL 2.75e-01 -0.0996 0.091 0.58 intMono L2
ENSG00000111145 ELK3 23495 sc-eQTL 7.49e-01 -0.0261 0.0813 0.58 intMono L2
ENSG00000139343 SNRPF 358942 sc-eQTL 2.66e-01 -0.0967 0.0866 0.58 intMono L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 8.44e-01 -0.0177 0.0903 0.58 intMono L2
ENSG00000257715 AC007298.1 192547 sc-eQTL 1.34e-01 0.136 0.0903 0.58 intMono L2
ENSG00000059758 CDK17 -182610 sc-eQTL 5.24e-01 0.0438 0.0686 0.575 ncMono L2
ENSG00000084110 HAL 221505 sc-eQTL 5.41e-01 0.0468 0.0766 0.575 ncMono L2
ENSG00000111142 METAP2 744350 sc-eQTL 4.49e-01 0.0701 0.0925 0.575 ncMono L2
ENSG00000111144 LTA4H 174350 sc-eQTL 2.81e-01 -0.092 0.0852 0.575 ncMono L2
ENSG00000111145 ELK3 23495 sc-eQTL 9.94e-01 0.000557 0.0733 0.575 ncMono L2
ENSG00000139343 SNRPF 358942 sc-eQTL 4.68e-02 -0.148 0.0742 0.575 ncMono L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 9.32e-01 -0.00677 0.0796 0.575 ncMono L2
ENSG00000257715 AC007298.1 192547 sc-eQTL 9.79e-01 -0.00244 0.0908 0.575 ncMono L2
ENSG00000059758 CDK17 -182610 sc-eQTL 1.54e-01 0.133 0.0927 0.551 pDC L2
ENSG00000084110 HAL 221505 sc-eQTL 8.27e-01 -0.0172 0.0788 0.551 pDC L2
ENSG00000111142 METAP2 744350 sc-eQTL 3.40e-01 -0.101 0.106 0.551 pDC L2
ENSG00000111144 LTA4H 174350 sc-eQTL 3.47e-01 -0.0829 0.0879 0.551 pDC L2
ENSG00000111145 ELK3 23495 sc-eQTL 2.43e-01 -0.126 0.107 0.551 pDC L2
ENSG00000139343 SNRPF 358942 sc-eQTL 7.25e-01 0.0331 0.0941 0.551 pDC L2
ENSG00000139350 NEDD1 -689353 sc-eQTL 1.76e-01 0.14 0.103 0.551 pDC L2
ENSG00000257715 AC007298.1 192547 sc-eQTL 4.78e-01 -0.0632 0.0889 0.551 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 -182610 sc-eQTL 5.50e-01 -0.0357 0.0596 0.573 B_Memory LOneK1K
ENSG00000111142 METAP2 744350 sc-eQTL 5.09e-01 0.0548 0.0829 0.573 B_Memory LOneK1K
ENSG00000111144 LTA4H 174350 sc-eQTL 1.75e-01 0.0839 0.0617 0.573 B_Memory LOneK1K
ENSG00000111145 ELK3 23495 sc-eQTL 1.85e-01 -0.0939 0.0705 0.573 B_Memory LOneK1K
ENSG00000136014 USP44 666394 sc-eQTL 5.20e-01 -0.0569 0.0882 0.573 B_Memory LOneK1K
ENSG00000139343 SNRPF 358942 sc-eQTL 4.41e-01 0.0529 0.0685 0.573 B_Memory LOneK1K
ENSG00000139350 NEDD1 -689353 sc-eQTL 1.08e-01 -0.144 0.0895 0.573 B_Memory LOneK1K
ENSG00000059758 CDK17 -182610 sc-eQTL 9.99e-01 3.93e-05 0.0513 0.573 B_Naive LOneK1K
ENSG00000111142 METAP2 744350 sc-eQTL 1.66e-01 0.096 0.0692 0.573 B_Naive LOneK1K
ENSG00000111144 LTA4H 174350 sc-eQTL 5.69e-01 0.0328 0.0576 0.573 B_Naive LOneK1K
ENSG00000111145 ELK3 23495 sc-eQTL 3.95e-01 0.0558 0.0655 0.573 B_Naive LOneK1K
ENSG00000136014 USP44 666394 sc-eQTL 7.80e-01 -0.0224 0.0802 0.573 B_Naive LOneK1K
ENSG00000139343 SNRPF 358942 sc-eQTL 5.42e-01 0.0403 0.066 0.573 B_Naive LOneK1K
ENSG00000139350 NEDD1 -689353 sc-eQTL 4.04e-01 0.0729 0.0873 0.573 B_Naive LOneK1K
ENSG00000059758 CDK17 -182610 sc-eQTL 9.96e-02 -0.1 0.0605 0.573 CD14_Mono LOneK1K
ENSG00000084110 HAL 221505 sc-eQTL 7.51e-03 0.196 0.0724 0.573 CD14_Mono LOneK1K
ENSG00000111142 METAP2 744350 sc-eQTL 1.89e-01 0.091 0.0691 0.573 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 174350 sc-eQTL 1.08e-01 -0.13 0.0804 0.573 CD14_Mono LOneK1K
ENSG00000111145 ELK3 23495 sc-eQTL 1.28e-01 -0.0888 0.0581 0.573 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 358942 sc-eQTL 4.44e-01 -0.0432 0.0563 0.573 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -689353 sc-eQTL 5.47e-01 -0.0534 0.0884 0.573 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 192547 sc-eQTL 4.67e-01 -0.0596 0.0818 0.573 CD14_Mono LOneK1K
ENSG00000059758 CDK17 -182610 sc-eQTL 2.98e-01 0.0654 0.0627 0.578 CD16_Mono LOneK1K
ENSG00000084110 HAL 221505 sc-eQTL 6.43e-01 0.0344 0.0742 0.578 CD16_Mono LOneK1K
ENSG00000111142 METAP2 744350 sc-eQTL 1.48e-01 0.122 0.0838 0.578 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 174350 sc-eQTL 2.40e-01 -0.0967 0.0821 0.578 CD16_Mono LOneK1K
ENSG00000111145 ELK3 23495 sc-eQTL 3.62e-01 -0.0555 0.0608 0.578 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 358942 sc-eQTL 1.16e-01 -0.0985 0.0625 0.578 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -689353 sc-eQTL 7.71e-01 -0.0235 0.0805 0.578 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 192547 sc-eQTL 7.42e-01 0.0281 0.0852 0.578 CD16_Mono LOneK1K
ENSG00000059758 CDK17 -182610 sc-eQTL 1.10e-01 0.0697 0.0434 0.575 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 744350 sc-eQTL 1.54e-01 0.0946 0.0661 0.575 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 174350 sc-eQTL 5.31e-02 -0.146 0.0753 0.575 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 23495 sc-eQTL 5.45e-01 0.0421 0.0694 0.575 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 358942 sc-eQTL 4.68e-01 0.0431 0.0594 0.575 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -689353 sc-eQTL 1.14e-01 -0.117 0.0737 0.575 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 \N 23495 1.86e-05 1.71e-05 2.86e-06 9.98e-06 2.69e-06 7.99e-06 2.26e-05 2.48e-06 1.62e-05 7.59e-06 2.08e-05 8.18e-06 2.88e-05 7.19e-06 5.07e-06 9.57e-06 9.2e-06 1.46e-05 4.18e-06 4.04e-06 7.92e-06 1.6e-05 1.69e-05 4.94e-06 2.82e-05 5.09e-06 7.74e-06 6.3e-06 1.77e-05 1.73e-05 1.08e-05 9.89e-07 1.42e-06 4.26e-06 7.16e-06 3.63e-06 1.78e-06 2.39e-06 2.84e-06 2.03e-06 1.14e-06 2.28e-05 2.64e-06 1.97e-07 1.27e-06 2.35e-06 2.84e-06 7.89e-07 4.9e-07