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Genes within 1Mb (chr12:95922700:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT 704954 sc-eQTL 3.24e-01 0.231 0.233 0.949 B_Activated L2
ENSG00000059758 CDK17 -477780 sc-eQTL 6.74e-01 -0.0818 0.194 0.949 B_Activated L2
ENSG00000111142 METAP2 449180 sc-eQTL 9.00e-01 -0.0306 0.244 0.949 B_Activated L2
ENSG00000111144 LTA4H -120820 sc-eQTL 5.15e-01 -0.143 0.219 0.949 B_Activated L2
ENSG00000111145 ELK3 -271675 sc-eQTL 3.15e-01 -0.234 0.232 0.949 B_Activated L2
ENSG00000120798 NR2C1 849072 sc-eQTL 8.37e-01 -0.0481 0.234 0.949 B_Activated L2
ENSG00000136014 USP44 371224 sc-eQTL 1.19e-01 -0.278 0.177 0.949 B_Activated L2
ENSG00000139343 SNRPF 63772 sc-eQTL 5.05e-01 0.146 0.219 0.949 B_Activated L2
ENSG00000139350 NEDD1 -984523 sc-eQTL 6.45e-01 -0.106 0.229 0.949 B_Activated L2
ENSG00000180263 FGD6 705218 sc-eQTL 4.22e-01 -0.133 0.165 0.949 B_Activated L2
ENSG00000184752 NDUFA12 918952 sc-eQTL 6.08e-01 -0.106 0.207 0.949 B_Activated L2
ENSG00000028203 VEZT 704954 sc-eQTL 1.09e-01 -0.362 0.224 0.946 pDC L2
ENSG00000059758 CDK17 -477780 sc-eQTL 2.27e-01 0.244 0.201 0.946 pDC L2
ENSG00000084110 HAL -73665 sc-eQTL 8.47e-01 -0.033 0.171 0.946 pDC L2
ENSG00000111142 METAP2 449180 sc-eQTL 2.76e-01 0.251 0.23 0.946 pDC L2
ENSG00000111144 LTA4H -120820 sc-eQTL 9.89e-01 -0.00258 0.191 0.946 pDC L2
ENSG00000111145 ELK3 -271675 sc-eQTL 7.52e-01 0.0741 0.234 0.946 pDC L2
ENSG00000120798 NR2C1 849072 sc-eQTL 9.98e-01 -0.00059 0.228 0.946 pDC L2
ENSG00000139343 SNRPF 63772 sc-eQTL 6.08e-01 -0.105 0.204 0.946 pDC L2
ENSG00000139350 NEDD1 -984523 sc-eQTL 5.99e-02 -0.422 0.223 0.946 pDC L2
ENSG00000180263 FGD6 705218 sc-eQTL 2.77e-01 -0.216 0.198 0.946 pDC L2
ENSG00000184752 NDUFA12 918952 sc-eQTL 9.70e-01 0.00732 0.196 0.946 pDC L2
ENSG00000257715 AC007298.1 -102623 sc-eQTL 3.74e-01 0.172 0.193 0.946 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000139343 SNRPF 63772 eQTL 0.0198 -0.04 0.0171 0.00141 0.0 0.0682
ENSG00000139344 AMDHD1 -20631 eQTL 2.26e-37 0.78 0.0585 0.0 0.0 0.0682
ENSG00000188596 CFAP54 -566875 eQTL 0.00786 -0.102 0.0382 0.00298 0.0 0.0682

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000139344 AMDHD1 -20631 1.92e-05 2.16e-05 4.31e-06 1.28e-05 3.8e-06 9.68e-06 2.91e-05 3.76e-06 2.01e-05 1.05e-05 2.74e-05 1.05e-05 3.65e-05 8.97e-06 5.36e-06 1.18e-05 1.17e-05 1.87e-05 6.26e-06 5.3e-06 1.01e-05 2.16e-05 2.17e-05 7.43e-06 3.32e-05 5.78e-06 8.89e-06 8.79e-06 2.34e-05 2.17e-05 1.31e-05 1.65e-06 2.23e-06 6.01e-06 8.76e-06 4.59e-06 2.68e-06 2.99e-06 3.98e-06 2.88e-06 1.72e-06 2.7e-05 2.66e-06 3.62e-07 2.06e-06 2.98e-06 3.59e-06 1.42e-06 1.38e-06