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Genes within 1Mb (chr12:95751667:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT 533921 sc-eQTL 8.72e-01 0.0338 0.21 0.05 CD4_CTL L2
ENSG00000059758 CDK17 -648813 sc-eQTL 4.27e-01 -0.122 0.153 0.05 CD4_CTL L2
ENSG00000111142 METAP2 278147 sc-eQTL 1.63e-01 -0.306 0.219 0.05 CD4_CTL L2
ENSG00000111144 LTA4H -291853 sc-eQTL 4.71e-01 0.156 0.216 0.05 CD4_CTL L2
ENSG00000111145 ELK3 -442708 sc-eQTL 5.82e-01 0.121 0.219 0.05 CD4_CTL L2
ENSG00000120798 NR2C1 678039 sc-eQTL 1.52e-01 0.316 0.219 0.05 CD4_CTL L2
ENSG00000136014 USP44 200191 sc-eQTL 3.17e-01 0.175 0.174 0.05 CD4_CTL L2
ENSG00000139343 SNRPF -107261 sc-eQTL 4.91e-01 0.131 0.19 0.05 CD4_CTL L2
ENSG00000184752 NDUFA12 747919 sc-eQTL 1.20e-01 0.28 0.18 0.05 CD4_CTL L2
ENSG00000028203 VEZT 533921 sc-eQTL 1.38e-01 -0.312 0.21 0.051 NK_CD56bright L2
ENSG00000059758 CDK17 -648813 sc-eQTL 8.03e-01 -0.0307 0.123 0.051 NK_CD56bright L2
ENSG00000111142 METAP2 278147 sc-eQTL 8.65e-01 -0.0352 0.207 0.051 NK_CD56bright L2
ENSG00000111144 LTA4H -291853 sc-eQTL 6.67e-01 0.0783 0.182 0.051 NK_CD56bright L2
ENSG00000111145 ELK3 -442708 sc-eQTL 2.29e-01 0.232 0.192 0.051 NK_CD56bright L2
ENSG00000120798 NR2C1 678039 sc-eQTL 7.82e-01 -0.0603 0.218 0.051 NK_CD56bright L2
ENSG00000139343 SNRPF -107261 sc-eQTL 2.96e-01 0.211 0.201 0.051 NK_CD56bright L2
ENSG00000184752 NDUFA12 747919 sc-eQTL 8.34e-01 -0.0364 0.173 0.051 NK_CD56bright L2
ENSG00000028203 VEZT 533921 sc-eQTL 2.59e-01 -0.257 0.227 0.05 NK_HLA L2
ENSG00000059758 CDK17 -648813 sc-eQTL 7.72e-01 -0.049 0.169 0.05 NK_HLA L2
ENSG00000111142 METAP2 278147 sc-eQTL 4.63e-01 -0.156 0.212 0.05 NK_HLA L2
ENSG00000111144 LTA4H -291853 sc-eQTL 5.10e-01 0.146 0.221 0.05 NK_HLA L2
ENSG00000111145 ELK3 -442708 sc-eQTL 2.99e-02 -0.443 0.203 0.05 NK_HLA L2
ENSG00000120798 NR2C1 678039 sc-eQTL 3.25e-02 -0.477 0.221 0.05 NK_HLA L2
ENSG00000139343 SNRPF -107261 sc-eQTL 9.76e-01 0.00644 0.214 0.05 NK_HLA L2
ENSG00000184752 NDUFA12 747919 sc-eQTL 2.98e-01 0.197 0.189 0.05 NK_HLA L2
ENSG00000028203 VEZT 533921 sc-eQTL 3.43e-01 -0.191 0.201 0.05 Pro_T L2
ENSG00000059758 CDK17 -648813 sc-eQTL 8.41e-01 0.0262 0.131 0.05 Pro_T L2
ENSG00000074527 NTN4 -39485 sc-eQTL 4.66e-01 0.107 0.147 0.05 Pro_T L2
ENSG00000111142 METAP2 278147 sc-eQTL 2.48e-01 -0.2 0.173 0.05 Pro_T L2
ENSG00000111144 LTA4H -291853 sc-eQTL 5.68e-01 -0.0986 0.172 0.05 Pro_T L2
ENSG00000111145 ELK3 -442708 sc-eQTL 9.60e-01 -0.0105 0.209 0.05 Pro_T L2
ENSG00000120798 NR2C1 678039 sc-eQTL 4.94e-01 -0.143 0.209 0.05 Pro_T L2
ENSG00000139343 SNRPF -107261 sc-eQTL 2.08e-01 0.166 0.131 0.05 Pro_T L2
ENSG00000184752 NDUFA12 747919 sc-eQTL 8.87e-01 0.0179 0.127 0.05 Pro_T L2
ENSG00000188596 CFAP54 -737904 sc-eQTL 2.38e-01 -0.182 0.154 0.05 Pro_T L2
ENSG00000028203 VEZT 533921 sc-eQTL 4.55e-01 0.147 0.196 0.052 ncMono L2
ENSG00000059758 CDK17 -648813 sc-eQTL 5.87e-01 0.0831 0.153 0.052 ncMono L2
ENSG00000084110 HAL -244698 sc-eQTL 9.23e-01 -0.0165 0.171 0.052 ncMono L2
ENSG00000111142 METAP2 278147 sc-eQTL 2.29e-02 -0.467 0.204 0.052 ncMono L2
ENSG00000111144 LTA4H -291853 sc-eQTL 1.21e-02 -0.474 0.187 0.052 ncMono L2
ENSG00000111145 ELK3 -442708 sc-eQTL 5.20e-01 0.105 0.163 0.052 ncMono L2
ENSG00000120798 NR2C1 678039 sc-eQTL 8.83e-01 0.0301 0.205 0.052 ncMono L2
ENSG00000139343 SNRPF -107261 sc-eQTL 2.44e-02 0.374 0.165 0.052 ncMono L2
ENSG00000180263 FGD6 534185 sc-eQTL 9.69e-01 0.00765 0.194 0.052 ncMono L2
ENSG00000184752 NDUFA12 747919 sc-eQTL 4.10e-02 0.351 0.171 0.052 ncMono L2
ENSG00000257715 AC007298.1 -273656 sc-eQTL 3.49e-01 -0.189 0.202 0.052 ncMono L2
ENSG00000028203 VEZT 533921 sc-eQTL 6.57e-01 -0.101 0.226 0.054 pDC L2
ENSG00000059758 CDK17 -648813 sc-eQTL 6.24e-01 -0.0996 0.203 0.054 pDC L2
ENSG00000084110 HAL -244698 sc-eQTL 7.90e-01 -0.0458 0.171 0.054 pDC L2
ENSG00000111142 METAP2 278147 sc-eQTL 3.56e-01 -0.213 0.231 0.054 pDC L2
ENSG00000111144 LTA4H -291853 sc-eQTL 5.58e-01 -0.112 0.192 0.054 pDC L2
ENSG00000111145 ELK3 -442708 sc-eQTL 1.92e-01 -0.306 0.233 0.054 pDC L2
ENSG00000120798 NR2C1 678039 sc-eQTL 8.02e-01 0.0574 0.229 0.054 pDC L2
ENSG00000139343 SNRPF -107261 sc-eQTL 9.12e-01 -0.0226 0.205 0.054 pDC L2
ENSG00000180263 FGD6 534185 sc-eQTL 7.95e-01 -0.0518 0.199 0.054 pDC L2
ENSG00000184752 NDUFA12 747919 sc-eQTL 7.39e-01 0.0655 0.196 0.054 pDC L2
ENSG00000257715 AC007298.1 -273656 sc-eQTL 3.65e-01 -0.175 0.193 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111144 LTA4H -291853 eQTL 0.00481 -0.11 0.0389 0.0 0.0 0.0687
ENSG00000139344 AMDHD1 -191664 eQTL 1.38e-07 -0.332 0.0626 0.0 0.0 0.0687

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111144 LTA4H -291853 1.32e-06 9.3e-07 2.1e-07 5.51e-07 1.78e-07 4.11e-07 1.1e-06 2.71e-07 1.13e-06 3.89e-07 1.35e-06 6.06e-07 1.73e-06 2.61e-07 4.41e-07 6.36e-07 7.62e-07 5.65e-07 3.95e-07 3.96e-07 2.89e-07 9.57e-07 6.63e-07 4.66e-07 1.94e-06 2.37e-07 6.21e-07 5.29e-07 8.24e-07 9.3e-07 5.45e-07 3.77e-08 1.48e-07 3.79e-07 4.17e-07 2.91e-07 3.1e-07 1.15e-07 1.33e-07 1.98e-08 2.18e-07 1.43e-06 7.66e-08 2.71e-08 1.69e-07 7.09e-08 1.78e-07 8.57e-08 4.9e-08
ENSG00000139344 AMDHD1 -191664 2.08e-06 2.42e-06 2.16e-07 1.41e-06 4.65e-07 6.44e-07 1.29e-06 3.83e-07 1.76e-06 7.98e-07 1.97e-06 1.49e-06 3.04e-06 7.47e-07 3.68e-07 1.1e-06 1.1e-06 1.34e-06 5.38e-07 4.92e-07 6.15e-07 2e-06 1.56e-06 8.07e-07 2.61e-06 7.73e-07 1.13e-06 1.07e-06 1.66e-06 1.37e-06 9.97e-07 2.81e-07 3.47e-07 6.23e-07 9.17e-07 5.42e-07 7.24e-07 3.37e-07 5.12e-07 2.05e-07 3.57e-07 2.68e-06 4.26e-07 1.74e-07 3.65e-07 3.05e-07 3.2e-07 1.45e-07 2.41e-07