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Genes within 1Mb (chr12:95744143:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT 526397 sc-eQTL 4.96e-01 0.156 0.229 0.051 B_Activated L2
ENSG00000059758 CDK17 -656337 sc-eQTL 9.00e-01 0.0238 0.19 0.051 B_Activated L2
ENSG00000111142 METAP2 270623 sc-eQTL 4.77e-01 -0.17 0.238 0.051 B_Activated L2
ENSG00000111144 LTA4H -299377 sc-eQTL 5.07e-01 0.143 0.215 0.051 B_Activated L2
ENSG00000111145 ELK3 -450232 sc-eQTL 1.77e-01 -0.307 0.226 0.051 B_Activated L2
ENSG00000120798 NR2C1 670515 sc-eQTL 1.90e-01 -0.3 0.228 0.051 B_Activated L2
ENSG00000136014 USP44 192667 sc-eQTL 4.39e-01 -0.135 0.174 0.051 B_Activated L2
ENSG00000139343 SNRPF -114785 sc-eQTL 8.20e-02 -0.372 0.213 0.051 B_Activated L2
ENSG00000180263 FGD6 526661 sc-eQTL 8.61e-01 -0.0284 0.162 0.051 B_Activated L2
ENSG00000184752 NDUFA12 740395 sc-eQTL 2.18e-01 -0.249 0.202 0.051 B_Activated L2
ENSG00000028203 VEZT 526397 sc-eQTL 3.96e-01 0.176 0.207 0.053 CD8_TCM L2
ENSG00000059758 CDK17 -656337 sc-eQTL 7.12e-01 0.0519 0.141 0.053 CD8_TCM L2
ENSG00000111142 METAP2 270623 sc-eQTL 9.98e-01 -0.000533 0.21 0.053 CD8_TCM L2
ENSG00000111144 LTA4H -299377 sc-eQTL 3.81e-02 0.427 0.204 0.053 CD8_TCM L2
ENSG00000111145 ELK3 -450232 sc-eQTL 9.82e-01 0.00406 0.175 0.053 CD8_TCM L2
ENSG00000120798 NR2C1 670515 sc-eQTL 8.65e-01 0.036 0.211 0.053 CD8_TCM L2
ENSG00000136014 USP44 192667 sc-eQTL 5.38e-01 -0.117 0.189 0.053 CD8_TCM L2
ENSG00000139343 SNRPF -114785 sc-eQTL 6.06e-04 -0.682 0.196 0.053 CD8_TCM L2
ENSG00000184752 NDUFA12 740395 sc-eQTL 2.28e-01 -0.199 0.165 0.053 CD8_TCM L2
ENSG00000028203 VEZT 526397 sc-eQTL 9.85e-01 -0.00415 0.222 0.05 CD8_TEM L2
ENSG00000059758 CDK17 -656337 sc-eQTL 9.14e-01 0.0199 0.184 0.05 CD8_TEM L2
ENSG00000111142 METAP2 270623 sc-eQTL 6.18e-01 -0.108 0.216 0.05 CD8_TEM L2
ENSG00000111144 LTA4H -299377 sc-eQTL 2.63e-02 0.497 0.222 0.05 CD8_TEM L2
ENSG00000111145 ELK3 -450232 sc-eQTL 4.23e-01 -0.177 0.221 0.05 CD8_TEM L2
ENSG00000120798 NR2C1 670515 sc-eQTL 5.43e-01 -0.138 0.227 0.05 CD8_TEM L2
ENSG00000136014 USP44 192667 sc-eQTL 7.86e-01 -0.0513 0.188 0.05 CD8_TEM L2
ENSG00000139343 SNRPF -114785 sc-eQTL 4.51e-01 -0.155 0.205 0.05 CD8_TEM L2
ENSG00000184752 NDUFA12 740395 sc-eQTL 2.65e-02 -0.417 0.187 0.05 CD8_TEM L2
ENSG00000028203 VEZT 526397 sc-eQTL 3.72e-01 -0.218 0.243 0.056 PB L2
ENSG00000059758 CDK17 -656337 sc-eQTL 5.63e-01 0.121 0.208 0.056 PB L2
ENSG00000111142 METAP2 270623 sc-eQTL 9.40e-01 0.0185 0.243 0.056 PB L2
ENSG00000111144 LTA4H -299377 sc-eQTL 2.05e-01 -0.233 0.182 0.056 PB L2
ENSG00000111145 ELK3 -450232 sc-eQTL 9.50e-01 0.0148 0.235 0.056 PB L2
ENSG00000120798 NR2C1 670515 sc-eQTL 2.44e-02 -0.516 0.226 0.056 PB L2
ENSG00000136014 USP44 192667 sc-eQTL 3.45e-01 0.206 0.217 0.056 PB L2
ENSG00000139343 SNRPF -114785 sc-eQTL 3.32e-02 -0.485 0.225 0.056 PB L2
ENSG00000180263 FGD6 526661 sc-eQTL 6.32e-01 0.0932 0.194 0.056 PB L2
ENSG00000184752 NDUFA12 740395 sc-eQTL 6.95e-01 -0.0537 0.137 0.056 PB L2
ENSG00000028203 VEZT 526397 sc-eQTL 4.65e-01 0.141 0.192 0.054 cDC L2
ENSG00000059758 CDK17 -656337 sc-eQTL 3.27e-01 -0.165 0.168 0.054 cDC L2
ENSG00000084110 HAL -252222 sc-eQTL 7.55e-01 -0.0545 0.175 0.054 cDC L2
ENSG00000111142 METAP2 270623 sc-eQTL 4.76e-01 0.15 0.211 0.054 cDC L2
ENSG00000111144 LTA4H -299377 sc-eQTL 2.76e-01 -0.163 0.149 0.054 cDC L2
ENSG00000111145 ELK3 -450232 sc-eQTL 8.45e-01 -0.0388 0.198 0.054 cDC L2
ENSG00000120798 NR2C1 670515 sc-eQTL 1.90e-01 -0.266 0.202 0.054 cDC L2
ENSG00000139343 SNRPF -114785 sc-eQTL 5.84e-01 0.0907 0.165 0.054 cDC L2
ENSG00000180263 FGD6 526661 sc-eQTL 3.76e-02 0.404 0.193 0.054 cDC L2
ENSG00000184752 NDUFA12 740395 sc-eQTL 5.70e-02 -0.315 0.164 0.054 cDC L2
ENSG00000257715 AC007298.1 -281180 sc-eQTL 9.22e-01 -0.0166 0.17 0.054 cDC L2
ENSG00000028203 VEZT 526397 sc-eQTL 6.84e-01 0.102 0.251 0.052 gdT L2
ENSG00000059758 CDK17 -656337 sc-eQTL 9.84e-01 -0.00325 0.166 0.052 gdT L2
ENSG00000074527 NTN4 -47009 sc-eQTL 2.12e-01 -0.238 0.19 0.052 gdT L2
ENSG00000111142 METAP2 270623 sc-eQTL 1.76e-01 -0.322 0.237 0.052 gdT L2
ENSG00000111144 LTA4H -299377 sc-eQTL 5.10e-01 -0.164 0.248 0.052 gdT L2
ENSG00000111145 ELK3 -450232 sc-eQTL 3.70e-01 0.206 0.229 0.052 gdT L2
ENSG00000120798 NR2C1 670515 sc-eQTL 4.79e-01 -0.181 0.255 0.052 gdT L2
ENSG00000139343 SNRPF -114785 sc-eQTL 8.46e-01 -0.043 0.222 0.052 gdT L2
ENSG00000184752 NDUFA12 740395 sc-eQTL 4.25e-01 0.164 0.205 0.052 gdT L2
ENSG00000188596 CFAP54 -745428 sc-eQTL 1.10e-01 -0.342 0.213 0.052 gdT L2
ENSG00000028203 VEZT 526397 sc-eQTL 2.93e-01 -0.227 0.215 0.051 intMono L2
ENSG00000059758 CDK17 -656337 sc-eQTL 9.74e-01 0.00634 0.192 0.051 intMono L2
ENSG00000084110 HAL -252222 sc-eQTL 1.44e-01 0.283 0.193 0.051 intMono L2
ENSG00000111142 METAP2 270623 sc-eQTL 6.01e-01 0.115 0.22 0.051 intMono L2
ENSG00000111144 LTA4H -299377 sc-eQTL 2.38e-01 0.235 0.198 0.051 intMono L2
ENSG00000111145 ELK3 -450232 sc-eQTL 5.33e-01 -0.111 0.177 0.051 intMono L2
ENSG00000120798 NR2C1 670515 sc-eQTL 5.14e-01 -0.134 0.205 0.051 intMono L2
ENSG00000139343 SNRPF -114785 sc-eQTL 9.77e-01 0.00542 0.189 0.051 intMono L2
ENSG00000180263 FGD6 526661 sc-eQTL 6.04e-01 0.0991 0.191 0.051 intMono L2
ENSG00000184752 NDUFA12 740395 sc-eQTL 4.61e-01 -0.1 0.136 0.051 intMono L2
ENSG00000257715 AC007298.1 -281180 sc-eQTL 2.37e-01 0.234 0.197 0.051 intMono L2
ENSG00000028203 VEZT 526397 sc-eQTL 9.12e-01 0.0221 0.2 0.052 ncMono L2
ENSG00000059758 CDK17 -656337 sc-eQTL 6.75e-01 0.0651 0.155 0.052 ncMono L2
ENSG00000084110 HAL -252222 sc-eQTL 1.32e-01 0.261 0.172 0.052 ncMono L2
ENSG00000111142 METAP2 270623 sc-eQTL 6.72e-01 0.0887 0.21 0.052 ncMono L2
ENSG00000111144 LTA4H -299377 sc-eQTL 1.25e-01 0.296 0.192 0.052 ncMono L2
ENSG00000111145 ELK3 -450232 sc-eQTL 1.29e-01 -0.251 0.165 0.052 ncMono L2
ENSG00000120798 NR2C1 670515 sc-eQTL 7.73e-01 0.06 0.208 0.052 ncMono L2
ENSG00000139343 SNRPF -114785 sc-eQTL 2.21e-01 -0.208 0.169 0.052 ncMono L2
ENSG00000180263 FGD6 526661 sc-eQTL 4.83e-01 0.138 0.197 0.052 ncMono L2
ENSG00000184752 NDUFA12 740395 sc-eQTL 2.42e-01 -0.205 0.175 0.052 ncMono L2
ENSG00000257715 AC007298.1 -281180 sc-eQTL 6.11e-02 0.384 0.204 0.052 ncMono L2
ENSG00000028203 VEZT 526397 sc-eQTL 9.03e-01 0.0269 0.219 0.054 pDC L2
ENSG00000059758 CDK17 -656337 sc-eQTL 2.02e-01 -0.25 0.195 0.054 pDC L2
ENSG00000084110 HAL -252222 sc-eQTL 9.51e-01 0.0101 0.166 0.054 pDC L2
ENSG00000111142 METAP2 270623 sc-eQTL 2.48e-01 -0.258 0.223 0.054 pDC L2
ENSG00000111144 LTA4H -299377 sc-eQTL 7.78e-01 -0.0525 0.186 0.054 pDC L2
ENSG00000111145 ELK3 -450232 sc-eQTL 2.94e-02 -0.492 0.224 0.054 pDC L2
ENSG00000120798 NR2C1 670515 sc-eQTL 4.93e-01 0.152 0.221 0.054 pDC L2
ENSG00000139343 SNRPF -114785 sc-eQTL 8.60e-02 -0.339 0.196 0.054 pDC L2
ENSG00000180263 FGD6 526661 sc-eQTL 3.86e-02 -0.396 0.19 0.054 pDC L2
ENSG00000184752 NDUFA12 740395 sc-eQTL 2.89e-01 -0.201 0.189 0.054 pDC L2
ENSG00000257715 AC007298.1 -281180 sc-eQTL 3.69e-01 0.169 0.187 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111144 LTA4H -299377 eQTL 0.0143 0.103 0.042 0.0 0.0 0.0559
ENSG00000257715 AC007298.1 -281180 eQTL 0.0193 -0.0925 0.0394 0.0 0.0 0.0559
ENSG00000257878 AC007298.2 -252378 eQTL 0.00409 -0.0689 0.0239 0.0 0.0 0.0559

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina