Genes within 1Mb (chr12:95718655:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT 500909 sc-eQTL 3.89e-01 -0.199 0.231 0.051 B_Activated L2
ENSG00000059758 CDK17 -681825 sc-eQTL 2.91e-01 -0.203 0.191 0.051 B_Activated L2
ENSG00000111142 METAP2 245135 sc-eQTL 5.90e-01 -0.13 0.241 0.051 B_Activated L2
ENSG00000111144 LTA4H -324865 sc-eQTL 5.67e-01 0.124 0.217 0.051 B_Activated L2
ENSG00000111145 ELK3 -475720 sc-eQTL 8.19e-01 -0.0526 0.23 0.051 B_Activated L2
ENSG00000120798 NR2C1 645027 sc-eQTL 2.16e-01 -0.286 0.23 0.051 B_Activated L2
ENSG00000136014 USP44 167179 sc-eQTL 3.24e-01 0.174 0.176 0.051 B_Activated L2
ENSG00000139343 SNRPF -140273 sc-eQTL 4.01e-01 0.182 0.216 0.051 B_Activated L2
ENSG00000180263 FGD6 501173 sc-eQTL 4.69e-01 0.118 0.163 0.051 B_Activated L2
ENSG00000184752 NDUFA12 714907 sc-eQTL 1.95e-01 -0.265 0.203 0.051 B_Activated L2
ENSG00000028203 VEZT 500909 sc-eQTL 5.77e-01 0.137 0.246 0.056 PB L2
ENSG00000059758 CDK17 -681825 sc-eQTL 4.07e-01 0.174 0.21 0.056 PB L2
ENSG00000111142 METAP2 245135 sc-eQTL 9.74e-01 -0.00792 0.246 0.056 PB L2
ENSG00000111144 LTA4H -324865 sc-eQTL 5.71e-01 -0.105 0.185 0.056 PB L2
ENSG00000111145 ELK3 -475720 sc-eQTL 6.33e-01 0.114 0.237 0.056 PB L2
ENSG00000120798 NR2C1 645027 sc-eQTL 8.56e-01 0.0424 0.234 0.056 PB L2
ENSG00000136014 USP44 167179 sc-eQTL 4.64e-01 0.161 0.219 0.056 PB L2
ENSG00000139343 SNRPF -140273 sc-eQTL 3.61e-01 0.212 0.231 0.056 PB L2
ENSG00000180263 FGD6 501173 sc-eQTL 6.95e-01 0.0771 0.196 0.056 PB L2
ENSG00000184752 NDUFA12 714907 sc-eQTL 3.26e-01 0.136 0.137 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000074527 NTN4 -72497 eQTL 1.99e-06 0.313 0.0654 0.0 0.0 0.0535
ENSG00000084110 HAL -277710 eQTL 2.68e-08 0.15 0.0268 0.0 0.0 0.0535
ENSG00000111144 LTA4H -324865 pQTL 0.0296 -0.0805 0.037 0.0 0.0 0.0477
ENSG00000111144 LTA4H -324865 eQTL 0.0048 0.113 0.04 0.0 0.0 0.0535
ENSG00000120798 NR2C1 645027 eQTL 0.0192 -0.0537 0.0229 0.00143 0.0 0.0535


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000074527 NTN4 -72497 5.13e-06 9.48e-06 8.72e-07 3.42e-06 1.08e-06 1.53e-06 9.67e-06 2.22e-06 1.48e-05 5.41e-06 2.91e-05 3.05e-06 1.8e-05 2.7e-06 9.95e-07 4.51e-06 3.19e-06 3.84e-06 1.13e-06 9.54e-07 2.77e-06 8.03e-06 4.72e-06 1.68e-06 1.31e-05 1.3e-06 2.49e-06 3.44e-06 6.21e-06 7.05e-06 1.73e-05 2.83e-07 5.72e-07 1.28e-06 2.09e-06 1e-06 6.72e-07 3.15e-07 1.18e-06 2.76e-07 2.73e-07 1.29e-05 5.88e-07 1.63e-07 3.69e-07 1.14e-06 4.12e-07 2.4e-07 1.18e-07
ENSG00000084110 HAL -277710 9.14e-07 9.48e-07 1.02e-07 9.36e-07 9.86e-08 3.24e-07 1.08e-06 4.37e-07 1.65e-06 7.11e-07 3.01e-06 5.79e-07 2.54e-06 2.92e-07 5.42e-07 5.7e-07 7.39e-07 5.27e-07 9.97e-08 9.01e-08 2.43e-07 1.36e-06 5.77e-07 1.21e-07 2.25e-06 1.71e-07 4.62e-07 7.14e-07 6.84e-07 9.73e-07 2.01e-06 4.43e-08 3.74e-08 1.71e-07 3.35e-07 1.18e-07 6.39e-08 8.2e-08 5.28e-08 6.92e-08 5.13e-08 1.65e-06 2.32e-08 1.99e-08 1.08e-07 9.85e-08 1e-07 3.25e-09 4.8e-08