Genes within 1Mb (chr12:95717340:A:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT 499594 sc-eQTL 3.89e-01 -0.199 0.231 0.051 B_Activated L2
ENSG00000059758 CDK17 -683140 sc-eQTL 2.91e-01 -0.203 0.191 0.051 B_Activated L2
ENSG00000111142 METAP2 243820 sc-eQTL 5.90e-01 -0.13 0.241 0.051 B_Activated L2
ENSG00000111144 LTA4H -326180 sc-eQTL 5.67e-01 0.124 0.217 0.051 B_Activated L2
ENSG00000111145 ELK3 -477035 sc-eQTL 8.19e-01 -0.0526 0.23 0.051 B_Activated L2
ENSG00000120798 NR2C1 643712 sc-eQTL 2.16e-01 -0.286 0.23 0.051 B_Activated L2
ENSG00000136014 USP44 165864 sc-eQTL 3.24e-01 0.174 0.176 0.051 B_Activated L2
ENSG00000139343 SNRPF -141588 sc-eQTL 4.01e-01 0.182 0.216 0.051 B_Activated L2
ENSG00000180263 FGD6 499858 sc-eQTL 4.69e-01 0.118 0.163 0.051 B_Activated L2
ENSG00000184752 NDUFA12 713592 sc-eQTL 1.95e-01 -0.265 0.203 0.051 B_Activated L2
ENSG00000028203 VEZT 499594 sc-eQTL 5.77e-01 0.137 0.246 0.056 PB L2
ENSG00000059758 CDK17 -683140 sc-eQTL 4.07e-01 0.174 0.21 0.056 PB L2
ENSG00000111142 METAP2 243820 sc-eQTL 9.74e-01 -0.00792 0.246 0.056 PB L2
ENSG00000111144 LTA4H -326180 sc-eQTL 5.71e-01 -0.105 0.185 0.056 PB L2
ENSG00000111145 ELK3 -477035 sc-eQTL 6.33e-01 0.114 0.237 0.056 PB L2
ENSG00000120798 NR2C1 643712 sc-eQTL 8.56e-01 0.0424 0.234 0.056 PB L2
ENSG00000136014 USP44 165864 sc-eQTL 4.64e-01 0.161 0.219 0.056 PB L2
ENSG00000139343 SNRPF -141588 sc-eQTL 3.61e-01 0.212 0.231 0.056 PB L2
ENSG00000180263 FGD6 499858 sc-eQTL 6.95e-01 0.0771 0.196 0.056 PB L2
ENSG00000184752 NDUFA12 713592 sc-eQTL 3.26e-01 0.136 0.137 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000074527 NTN4 -73812 eQTL 1.27e-06 0.316 0.0649 0.0 0.0 0.0545
ENSG00000084110 HAL -279025 eQTL 3.5e-08 0.148 0.0266 0.0 0.0 0.0545
ENSG00000111144 LTA4H -326180 pQTL 0.0259 -0.0817 0.0366 0.0 0.0 0.0488
ENSG00000111144 LTA4H -326180 eQTL 0.00331 0.117 0.0397 0.0 0.0 0.0545
ENSG00000120798 NR2C1 643712 eQTL 0.0235 -0.0516 0.0227 0.00124 0.0 0.0545


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000074527 NTN4 -73812 7.83e-06 9.51e-06 7.79e-07 3.95e-06 1.49e-06 3.26e-06 9.67e-06 1.18e-06 6.09e-06 3.86e-06 1.04e-05 3.57e-06 1.15e-05 3.23e-06 1.3e-06 3.9e-06 3.69e-06 3.99e-06 2.19e-06 1.7e-06 3.15e-06 7.69e-06 5.82e-06 1.91e-06 1.16e-05 2.29e-06 2.88e-06 1.78e-06 7.05e-06 7.74e-06 4.49e-06 4.46e-07 7.6e-07 2.26e-06 2.4e-06 1.25e-06 1.05e-06 5.43e-07 1.2e-06 7.4e-07 5.7e-07 1.04e-05 7.85e-07 1.59e-07 6.98e-07 1.08e-06 1.15e-06 7.06e-07 3.9e-07
ENSG00000084110 HAL -279025 1.26e-06 1.18e-06 3.18e-07 1.14e-06 2.31e-07 4.81e-07 1.58e-06 3.46e-07 1.49e-06 4.44e-07 1.85e-06 5.86e-07 2.29e-06 3.03e-07 5.65e-07 7e-07 9.15e-07 7.08e-07 7.4e-07 6.87e-07 4.48e-07 1.38e-06 8.68e-07 6.2e-07 2.19e-06 3.75e-07 6.91e-07 6.51e-07 1.25e-06 1.19e-06 7.64e-07 1.85e-07 1.95e-07 6.19e-07 4.49e-07 3.71e-07 4.68e-07 1.47e-07 3.87e-07 2.42e-07 2.17e-07 1.63e-06 8.31e-08 8.08e-08 1.7e-07 1.22e-07 1.86e-07 8.96e-08 5.62e-08