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Genes within 1Mb (chr12:95525402:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT 307656 sc-eQTL 7.76e-01 0.0596 0.209 0.05 CD4_CTL L2
ENSG00000059758 CDK17 -875078 sc-eQTL 1.15e-01 -0.24 0.152 0.05 CD4_CTL L2
ENSG00000111142 METAP2 51882 sc-eQTL 5.86e-01 -0.119 0.218 0.05 CD4_CTL L2
ENSG00000111144 LTA4H -518118 sc-eQTL 7.07e-01 -0.081 0.215 0.05 CD4_CTL L2
ENSG00000111145 ELK3 -668973 sc-eQTL 7.12e-02 0.392 0.216 0.05 CD4_CTL L2
ENSG00000120798 NR2C1 451774 sc-eQTL 1.74e-01 -0.298 0.218 0.05 CD4_CTL L2
ENSG00000136014 USP44 -26074 sc-eQTL 2.99e-01 -0.181 0.174 0.05 CD4_CTL L2
ENSG00000139343 SNRPF -333526 sc-eQTL 6.84e-01 -0.0772 0.189 0.05 CD4_CTL L2
ENSG00000184752 NDUFA12 521654 sc-eQTL 5.34e-01 0.112 0.18 0.05 CD4_CTL L2
ENSG00000028203 VEZT 307656 sc-eQTL 4.68e-02 -0.391 0.195 0.051 cDC L2
ENSG00000057704 TMCC3 874845 sc-eQTL 8.98e-01 -0.0273 0.213 0.051 cDC L2
ENSG00000059758 CDK17 -875078 sc-eQTL 9.61e-02 -0.286 0.171 0.051 cDC L2
ENSG00000084110 HAL -470963 sc-eQTL 1.60e-03 0.559 0.174 0.051 cDC L2
ENSG00000111142 METAP2 51882 sc-eQTL 8.68e-03 0.563 0.212 0.051 cDC L2
ENSG00000111144 LTA4H -518118 sc-eQTL 3.51e-01 -0.143 0.153 0.051 cDC L2
ENSG00000111145 ELK3 -668973 sc-eQTL 3.60e-01 0.186 0.202 0.051 cDC L2
ENSG00000120798 NR2C1 451774 sc-eQTL 9.44e-01 -0.0147 0.208 0.051 cDC L2
ENSG00000139343 SNRPF -333526 sc-eQTL 2.28e-01 -0.205 0.169 0.051 cDC L2
ENSG00000180263 FGD6 307920 sc-eQTL 6.41e-01 -0.0935 0.2 0.051 cDC L2
ENSG00000184752 NDUFA12 521654 sc-eQTL 1.18e-01 0.266 0.169 0.051 cDC L2
ENSG00000257715 AC007298.1 -499921 sc-eQTL 3.75e-01 -0.155 0.174 0.051 cDC L2
ENSG00000028203 VEZT 307656 sc-eQTL 8.95e-02 -0.447 0.261 0.052 gdT L2
ENSG00000057704 TMCC3 874845 sc-eQTL 1.39e-02 -0.493 0.198 0.052 gdT L2
ENSG00000059758 CDK17 -875078 sc-eQTL 2.38e-01 -0.206 0.174 0.052 gdT L2
ENSG00000074527 NTN4 -265750 sc-eQTL 5.93e-03 -0.546 0.195 0.052 gdT L2
ENSG00000111142 METAP2 51882 sc-eQTL 3.62e-01 -0.229 0.25 0.052 gdT L2
ENSG00000111144 LTA4H -518118 sc-eQTL 3.57e-01 -0.241 0.261 0.052 gdT L2
ENSG00000111145 ELK3 -668973 sc-eQTL 7.69e-01 0.0713 0.242 0.052 gdT L2
ENSG00000120798 NR2C1 451774 sc-eQTL 4.95e-01 -0.183 0.268 0.052 gdT L2
ENSG00000139343 SNRPF -333526 sc-eQTL 7.04e-01 0.0888 0.233 0.052 gdT L2
ENSG00000184752 NDUFA12 521654 sc-eQTL 2.95e-01 -0.227 0.216 0.052 gdT L2
ENSG00000188596 CFAP54 -964169 sc-eQTL 5.14e-01 0.148 0.226 0.052 gdT L2
ENSG00000028203 VEZT 307656 sc-eQTL 8.97e-01 -0.0285 0.22 0.051 pDC L2
ENSG00000057704 TMCC3 874845 sc-eQTL 4.28e-02 -0.433 0.212 0.051 pDC L2
ENSG00000059758 CDK17 -875078 sc-eQTL 7.92e-01 0.0521 0.197 0.051 pDC L2
ENSG00000084110 HAL -470963 sc-eQTL 3.56e-01 -0.154 0.166 0.051 pDC L2
ENSG00000111142 METAP2 51882 sc-eQTL 7.17e-01 -0.0818 0.225 0.051 pDC L2
ENSG00000111144 LTA4H -518118 sc-eQTL 1.28e-01 -0.283 0.185 0.051 pDC L2
ENSG00000111145 ELK3 -668973 sc-eQTL 7.51e-01 0.0726 0.228 0.051 pDC L2
ENSG00000120798 NR2C1 451774 sc-eQTL 5.80e-01 -0.123 0.222 0.051 pDC L2
ENSG00000139343 SNRPF -333526 sc-eQTL 5.79e-01 -0.111 0.199 0.051 pDC L2
ENSG00000180263 FGD6 307920 sc-eQTL 9.44e-01 -0.0137 0.193 0.051 pDC L2
ENSG00000184752 NDUFA12 521654 sc-eQTL 6.85e-01 0.0776 0.191 0.051 pDC L2
ENSG00000257715 AC007298.1 -499921 sc-eQTL 7.02e-01 -0.0722 0.188 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111142 METAP2 51882 eQTL 1.21e-17 0.215 0.0247 0.0 0.0023 0.029

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111142 METAP2 51882 7.93e-06 9.38e-06 1.34e-06 5e-06 2.45e-06 4.21e-06 1.03e-05 1.79e-06 8.38e-06 4.89e-06 1.15e-05 4.9e-06 1.39e-05 3.84e-06 2.34e-06 6.38e-06 4.13e-06 7.14e-06 2.66e-06 2.92e-06 4.98e-06 8.59e-06 7.62e-06 3.3e-06 1.3e-05 3.73e-06 4.65e-06 3.66e-06 9.94e-06 9.19e-06 5.14e-06 9.59e-07 1.17e-06 3.35e-06 3.81e-06 2.69e-06 1.84e-06 1.84e-06 2.13e-06 1.01e-06 9.49e-07 1.19e-05 1.25e-06 2.03e-07 7.9e-07 1.63e-06 1.28e-06 7.15e-07 4.86e-07
ENSG00000136014 \N -26074 1.25e-05 1.43e-05 2.86e-06 8.64e-06 2.6e-06 6.32e-06 1.98e-05 2.48e-06 1.37e-05 6.76e-06 1.82e-05 6.83e-06 2.55e-05 5.14e-06 4.35e-06 9.08e-06 8.1e-06 1.21e-05 4.12e-06 4.08e-06 7.34e-06 1.34e-05 1.39e-05 5.19e-06 2.42e-05 5.11e-06 7.43e-06 6.14e-06 1.6e-05 1.73e-05 9.59e-06 1.18e-06 1.68e-06 4.56e-06 6.28e-06 4.06e-06 2.05e-06 2.64e-06 3.24e-06 2.33e-06 1.67e-06 1.8e-05 1.97e-06 3.24e-07 1.81e-06 2.35e-06 2.18e-06 1.21e-06 9.94e-07
ENSG00000184752 \N 521654 5.37e-07 2.67e-07 7.72e-08 2.58e-07 1.05e-07 1.26e-07 3.44e-07 7.65e-08 2.53e-07 1.5e-07 3.25e-07 1.96e-07 4.27e-07 8.85e-08 9.33e-08 1.33e-07 9.3e-08 2.93e-07 9.69e-08 7.54e-08 1.48e-07 2.3e-07 2.33e-07 7.22e-08 3.98e-07 2e-07 1.72e-07 1.69e-07 1.98e-07 2.26e-07 1.86e-07 8.25e-08 5.07e-08 1.23e-07 1.39e-07 5.23e-08 6.57e-08 6.56e-08 4.82e-08 8.16e-08 4.32e-08 2.71e-07 3.26e-08 1.7e-08 8.68e-08 8.94e-09 9.25e-08 2.75e-09 5.49e-08
ENSG00000258177 \N -698571 3.02e-07 1.5e-07 5.93e-08 2.15e-07 9.94e-08 8.21e-08 1.9e-07 5.85e-08 1.54e-07 7.6e-08 1.62e-07 1.15e-07 1.95e-07 8.13e-08 5.94e-08 7.89e-08 4.18e-08 1.72e-07 7.12e-08 5.2e-08 1.27e-07 1.39e-07 1.62e-07 3.4e-08 1.98e-07 1.26e-07 1.17e-07 1.12e-07 1.31e-07 1.06e-07 1.09e-07 4.32e-08 3.13e-08 9.76e-08 3.12e-08 2.68e-08 5.51e-08 8.25e-08 6.76e-08 3.99e-08 6.07e-08 1.5e-07 5.39e-08 1.09e-08 3.36e-08 1.55e-08 9.29e-08 1.96e-09 4.85e-08