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Genes within 1Mb (chr12:95331085:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT 113339 sc-eQTL 1.14e-01 -0.345 0.217 0.05 CD8_TEM L2
ENSG00000057704 TMCC3 680528 sc-eQTL 7.55e-01 0.0586 0.188 0.05 CD8_TEM L2
ENSG00000111142 METAP2 -142435 sc-eQTL 3.51e-01 -0.198 0.211 0.05 CD8_TEM L2
ENSG00000111144 LTA4H -712435 sc-eQTL 9.59e-01 -0.0114 0.221 0.05 CD8_TEM L2
ENSG00000111145 ELK3 -863290 sc-eQTL 3.12e-01 -0.22 0.217 0.05 CD8_TEM L2
ENSG00000120798 NR2C1 257457 sc-eQTL 8.81e-01 -0.0335 0.223 0.05 CD8_TEM L2
ENSG00000136014 USP44 -220391 sc-eQTL 4.68e-01 0.134 0.185 0.05 CD8_TEM L2
ENSG00000139343 SNRPF -527843 sc-eQTL 1.33e-01 0.303 0.201 0.05 CD8_TEM L2
ENSG00000173588 CEP83 871097 sc-eQTL 6.16e-01 0.109 0.217 0.05 CD8_TEM L2
ENSG00000184752 NDUFA12 327337 sc-eQTL 5.57e-01 0.109 0.185 0.05 CD8_TEM L2
ENSG00000028203 VEZT 113339 sc-eQTL 6.81e-01 0.0864 0.21 0.051 NK_CD56bright L2
ENSG00000057704 TMCC3 680528 sc-eQTL 2.36e-01 0.238 0.2 0.051 NK_CD56bright L2
ENSG00000111142 METAP2 -142435 sc-eQTL 3.00e-01 -0.214 0.206 0.051 NK_CD56bright L2
ENSG00000111144 LTA4H -712435 sc-eQTL 4.96e-01 -0.123 0.181 0.051 NK_CD56bright L2
ENSG00000111145 ELK3 -863290 sc-eQTL 9.04e-01 0.0232 0.192 0.051 NK_CD56bright L2
ENSG00000120798 NR2C1 257457 sc-eQTL 2.45e-01 -0.252 0.216 0.051 NK_CD56bright L2
ENSG00000139343 SNRPF -527843 sc-eQTL 4.68e-01 0.146 0.201 0.051 NK_CD56bright L2
ENSG00000173588 CEP83 871097 sc-eQTL 8.06e-01 -0.0443 0.18 0.051 NK_CD56bright L2
ENSG00000184752 NDUFA12 327337 sc-eQTL 2.41e-01 0.202 0.172 0.051 NK_CD56bright L2
ENSG00000028203 VEZT 113339 sc-eQTL 3.22e-01 0.22 0.221 0.053 NK_HLA L2
ENSG00000057704 TMCC3 680528 sc-eQTL 9.65e-02 0.326 0.195 0.053 NK_HLA L2
ENSG00000111142 METAP2 -142435 sc-eQTL 3.71e-01 -0.185 0.206 0.053 NK_HLA L2
ENSG00000111144 LTA4H -712435 sc-eQTL 5.94e-01 0.115 0.215 0.053 NK_HLA L2
ENSG00000111145 ELK3 -863290 sc-eQTL 7.21e-01 0.0712 0.2 0.053 NK_HLA L2
ENSG00000120798 NR2C1 257457 sc-eQTL 7.59e-01 0.067 0.218 0.053 NK_HLA L2
ENSG00000139343 SNRPF -527843 sc-eQTL 8.26e-02 0.36 0.206 0.053 NK_HLA L2
ENSG00000173588 CEP83 871097 sc-eQTL 2.84e-02 0.446 0.202 0.053 NK_HLA L2
ENSG00000184752 NDUFA12 327337 sc-eQTL 2.17e-01 -0.227 0.183 0.053 NK_HLA L2
ENSG00000028203 VEZT 113339 sc-eQTL 2.61e-01 -0.275 0.243 0.052 PB L2
ENSG00000057704 TMCC3 680528 sc-eQTL 5.42e-01 -0.134 0.22 0.052 PB L2
ENSG00000111142 METAP2 -142435 sc-eQTL 5.17e-01 -0.158 0.243 0.052 PB L2
ENSG00000111144 LTA4H -712435 sc-eQTL 5.44e-02 -0.352 0.181 0.052 PB L2
ENSG00000111145 ELK3 -863290 sc-eQTL 3.13e-02 -0.504 0.231 0.052 PB L2
ENSG00000120798 NR2C1 257457 sc-eQTL 3.51e-01 -0.216 0.231 0.052 PB L2
ENSG00000136014 USP44 -220391 sc-eQTL 7.38e-01 -0.0732 0.218 0.052 PB L2
ENSG00000139343 SNRPF -527843 sc-eQTL 7.62e-01 -0.0698 0.23 0.052 PB L2
ENSG00000173588 CEP83 871097 sc-eQTL 8.55e-01 0.043 0.234 0.052 PB L2
ENSG00000180263 FGD6 113603 sc-eQTL 9.95e-02 -0.32 0.193 0.052 PB L2
ENSG00000184752 NDUFA12 327337 sc-eQTL 9.02e-02 -0.231 0.135 0.052 PB L2
ENSG00000028203 VEZT 113339 sc-eQTL 1.76e-01 0.272 0.201 0.05 Pro_T L2
ENSG00000057704 TMCC3 680528 sc-eQTL 5.21e-01 -0.115 0.179 0.05 Pro_T L2
ENSG00000074527 NTN4 -460067 sc-eQTL 5.88e-01 -0.0794 0.146 0.05 Pro_T L2
ENSG00000111142 METAP2 -142435 sc-eQTL 1.55e-01 -0.246 0.172 0.05 Pro_T L2
ENSG00000111144 LTA4H -712435 sc-eQTL 2.28e-01 -0.208 0.172 0.05 Pro_T L2
ENSG00000111145 ELK3 -863290 sc-eQTL 6.25e-01 -0.102 0.208 0.05 Pro_T L2
ENSG00000120798 NR2C1 257457 sc-eQTL 5.83e-01 0.115 0.208 0.05 Pro_T L2
ENSG00000139343 SNRPF -527843 sc-eQTL 6.15e-01 0.066 0.131 0.05 Pro_T L2
ENSG00000173588 CEP83 871097 sc-eQTL 7.21e-01 -0.0722 0.202 0.05 Pro_T L2
ENSG00000184752 NDUFA12 327337 sc-eQTL 2.47e-01 0.146 0.126 0.05 Pro_T L2
ENSG00000028203 VEZT 113339 sc-eQTL 2.50e-01 -0.276 0.239 0.055 gdT L2
ENSG00000057704 TMCC3 680528 sc-eQTL 3.96e-01 0.156 0.184 0.055 gdT L2
ENSG00000074527 NTN4 -460067 sc-eQTL 9.07e-01 -0.0214 0.183 0.055 gdT L2
ENSG00000111142 METAP2 -142435 sc-eQTL 1.48e-01 -0.33 0.227 0.055 gdT L2
ENSG00000111144 LTA4H -712435 sc-eQTL 8.49e-01 0.0453 0.238 0.055 gdT L2
ENSG00000111145 ELK3 -863290 sc-eQTL 3.83e-01 0.192 0.22 0.055 gdT L2
ENSG00000120798 NR2C1 257457 sc-eQTL 3.79e-01 -0.215 0.244 0.055 gdT L2
ENSG00000139343 SNRPF -527843 sc-eQTL 3.15e-01 -0.214 0.212 0.055 gdT L2
ENSG00000173588 CEP83 871097 sc-eQTL 5.31e-01 0.142 0.226 0.055 gdT L2
ENSG00000184752 NDUFA12 327337 sc-eQTL 6.74e-01 -0.0831 0.197 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111142 METAP2 -142435 eQTL 0.0205 0.042 0.0181 0.00171 0.0 0.0667
ENSG00000111144 LTA4H -712435 eQTL 0.0034 0.118 0.0401 0.0 0.0 0.0667

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000184752 \N 327337 1.29e-06 9.33e-07 3.21e-07 7.39e-07 3.75e-07 4.69e-07 1.47e-06 3.85e-07 1.48e-06 4.78e-07 1.57e-06 6.61e-07 2.02e-06 2.88e-07 5.34e-07 9.24e-07 8.37e-07 6.91e-07 8.01e-07 6.33e-07 6.81e-07 1.42e-06 8.93e-07 6.39e-07 2.26e-06 6.01e-07 9.09e-07 8.37e-07 1.43e-06 1.25e-06 6.14e-07 2.06e-07 2.42e-07 7.11e-07 5.63e-07 4.63e-07 5.58e-07 1.67e-07 4.2e-07 2.97e-07 2.58e-07 1.53e-06 5.58e-08 2.71e-08 2.25e-07 1.27e-07 2.33e-07 8.31e-08 1.57e-07
ENSG00000258177 \N -892888 2.77e-07 1.33e-07 6.04e-08 2.01e-07 1.02e-07 8.45e-08 1.9e-07 5.62e-08 1.59e-07 7.6e-08 1.59e-07 1.22e-07 1.87e-07 7.95e-08 5.36e-08 8.08e-08 4.31e-08 1.64e-07 7.12e-08 5.2e-08 1.27e-07 1.39e-07 1.58e-07 3.22e-08 1.85e-07 1.31e-07 1.17e-07 1.1e-07 1.31e-07 1.03e-07 1.06e-07 3.99e-08 3.68e-08 8.89e-08 2.97e-08 3.07e-08 5.74e-08 8.68e-08 6.42e-08 5.24e-08 6.28e-08 1.46e-07 5.22e-08 1.55e-08 3.2e-08 1.68e-08 1.11e-07 1.89e-09 4.81e-08