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Genes within 1Mb (chr12:95290445:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT 72699 sc-eQTL 2.27e-01 0.251 0.207 0.05 CD4_CTL L2
ENSG00000111142 METAP2 -183075 sc-eQTL 5.05e-01 -0.145 0.217 0.05 CD4_CTL L2
ENSG00000111144 LTA4H -753075 sc-eQTL 1.21e-01 0.331 0.213 0.05 CD4_CTL L2
ENSG00000111145 ELK3 -903930 sc-eQTL 9.43e-01 -0.0156 0.217 0.05 CD4_CTL L2
ENSG00000120798 NR2C1 216817 sc-eQTL 4.54e-03 0.614 0.214 0.05 CD4_CTL L2
ENSG00000136014 USP44 -261031 sc-eQTL 7.46e-01 0.0561 0.173 0.05 CD4_CTL L2
ENSG00000139343 SNRPF -568483 sc-eQTL 6.97e-01 -0.0735 0.188 0.05 CD4_CTL L2
ENSG00000173588 CEP83 830457 sc-eQTL 1.25e-01 0.305 0.198 0.05 CD4_CTL L2
ENSG00000184752 NDUFA12 286697 sc-eQTL 7.39e-01 0.0598 0.179 0.05 CD4_CTL L2
ENSG00000028203 VEZT 72699 sc-eQTL 7.07e-01 0.0814 0.216 0.051 CD8_TCM L2
ENSG00000057704 TMCC3 639888 sc-eQTL 2.61e-01 0.187 0.166 0.051 CD8_TCM L2
ENSG00000111142 METAP2 -183075 sc-eQTL 6.45e-01 0.101 0.219 0.051 CD8_TCM L2
ENSG00000111144 LTA4H -753075 sc-eQTL 4.51e-01 0.163 0.215 0.051 CD8_TCM L2
ENSG00000111145 ELK3 -903930 sc-eQTL 7.12e-01 -0.0676 0.183 0.051 CD8_TCM L2
ENSG00000120798 NR2C1 216817 sc-eQTL 8.93e-01 -0.0298 0.22 0.051 CD8_TCM L2
ENSG00000136014 USP44 -261031 sc-eQTL 9.26e-01 -0.0183 0.198 0.051 CD8_TCM L2
ENSG00000139343 SNRPF -568483 sc-eQTL 3.23e-01 0.208 0.21 0.051 CD8_TCM L2
ENSG00000173588 CEP83 830457 sc-eQTL 9.27e-01 0.0197 0.214 0.051 CD8_TCM L2
ENSG00000184752 NDUFA12 286697 sc-eQTL 9.13e-01 -0.0189 0.172 0.051 CD8_TCM L2
ENSG00000028203 VEZT 72699 sc-eQTL 3.68e-01 -0.19 0.21 0.051 NK_CD56bright L2
ENSG00000057704 TMCC3 639888 sc-eQTL 6.23e-01 -0.0992 0.202 0.051 NK_CD56bright L2
ENSG00000111142 METAP2 -183075 sc-eQTL 1.70e-01 -0.284 0.206 0.051 NK_CD56bright L2
ENSG00000111144 LTA4H -753075 sc-eQTL 6.64e-02 0.333 0.18 0.051 NK_CD56bright L2
ENSG00000111145 ELK3 -903930 sc-eQTL 4.80e-01 0.136 0.193 0.051 NK_CD56bright L2
ENSG00000120798 NR2C1 216817 sc-eQTL 4.66e-01 -0.159 0.218 0.051 NK_CD56bright L2
ENSG00000139343 SNRPF -568483 sc-eQTL 6.89e-01 -0.0808 0.202 0.051 NK_CD56bright L2
ENSG00000173588 CEP83 830457 sc-eQTL 1.69e-01 0.248 0.18 0.051 NK_CD56bright L2
ENSG00000184752 NDUFA12 286697 sc-eQTL 8.26e-01 -0.038 0.173 0.051 NK_CD56bright L2
ENSG00000028203 VEZT 72699 sc-eQTL 5.43e-01 -0.134 0.221 0.053 NK_HLA L2
ENSG00000057704 TMCC3 639888 sc-eQTL 8.29e-01 0.0424 0.196 0.053 NK_HLA L2
ENSG00000111142 METAP2 -183075 sc-eQTL 6.14e-01 -0.104 0.206 0.053 NK_HLA L2
ENSG00000111144 LTA4H -753075 sc-eQTL 1.30e-01 0.324 0.213 0.053 NK_HLA L2
ENSG00000111145 ELK3 -903930 sc-eQTL 5.40e-01 -0.122 0.199 0.053 NK_HLA L2
ENSG00000120798 NR2C1 216817 sc-eQTL 2.42e-01 -0.254 0.216 0.053 NK_HLA L2
ENSG00000139343 SNRPF -568483 sc-eQTL 4.47e-01 0.158 0.207 0.053 NK_HLA L2
ENSG00000173588 CEP83 830457 sc-eQTL 6.74e-01 -0.0856 0.204 0.053 NK_HLA L2
ENSG00000184752 NDUFA12 286697 sc-eQTL 8.74e-01 -0.029 0.183 0.053 NK_HLA L2
ENSG00000028203 VEZT 72699 sc-eQTL 4.36e-01 0.196 0.251 0.052 gdT L2
ENSG00000057704 TMCC3 639888 sc-eQTL 6.04e-01 0.0999 0.192 0.052 gdT L2
ENSG00000074527 NTN4 -500707 sc-eQTL 7.97e-01 0.0493 0.191 0.052 gdT L2
ENSG00000111142 METAP2 -183075 sc-eQTL 3.88e-01 -0.206 0.238 0.052 gdT L2
ENSG00000111144 LTA4H -753075 sc-eQTL 2.19e-01 -0.306 0.248 0.052 gdT L2
ENSG00000111145 ELK3 -903930 sc-eQTL 5.35e-01 0.143 0.23 0.052 gdT L2
ENSG00000120798 NR2C1 216817 sc-eQTL 8.96e-01 -0.0333 0.255 0.052 gdT L2
ENSG00000139343 SNRPF -568483 sc-eQTL 4.65e-01 0.163 0.222 0.052 gdT L2
ENSG00000173588 CEP83 830457 sc-eQTL 2.59e-01 0.267 0.236 0.052 gdT L2
ENSG00000184752 NDUFA12 286697 sc-eQTL 7.11e-01 -0.0765 0.206 0.052 gdT L2
ENSG00000028203 VEZT 72699 sc-eQTL 5.51e-01 -0.136 0.228 0.054 pDC L2
ENSG00000057704 TMCC3 639888 sc-eQTL 1.45e-01 0.324 0.221 0.054 pDC L2
ENSG00000084110 HAL -705920 sc-eQTL 2.56e-01 -0.196 0.172 0.054 pDC L2
ENSG00000111142 METAP2 -183075 sc-eQTL 6.77e-01 -0.0974 0.233 0.054 pDC L2
ENSG00000111144 LTA4H -753075 sc-eQTL 8.45e-01 -0.0378 0.193 0.054 pDC L2
ENSG00000111145 ELK3 -903930 sc-eQTL 1.72e-01 0.322 0.235 0.054 pDC L2
ENSG00000120798 NR2C1 216817 sc-eQTL 4.52e-01 0.173 0.23 0.054 pDC L2
ENSG00000139343 SNRPF -568483 sc-eQTL 5.65e-01 0.119 0.206 0.054 pDC L2
ENSG00000173588 CEP83 830457 sc-eQTL 6.00e-01 -0.125 0.238 0.054 pDC L2
ENSG00000180263 FGD6 72963 sc-eQTL 1.61e-01 -0.281 0.199 0.054 pDC L2
ENSG00000184752 NDUFA12 286697 sc-eQTL 6.02e-01 0.103 0.197 0.054 pDC L2
ENSG00000257715 AC007298.1 -734878 sc-eQTL 8.91e-01 0.0268 0.195 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 -903930 eQTL 0.037 0.0963 0.0461 0.0 0.0 0.0299
ENSG00000139344 AMDHD1 -652886 eQTL 0.00445 0.252 0.0885 0.0 0.0 0.0299
ENSG00000180263 FGD6 72963 eQTL 0.000105 0.206 0.0529 0.0016 0.00124 0.0299
ENSG00000184752 NDUFA12 286697 eQTL 7.16e-05 0.195 0.0488 0.0 0.0 0.0299
ENSG00000236349 SUCLG2P2 742204 eQTL 0.0214 0.142 0.0618 0.001 0.0 0.0299

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 ELK3 -903930 2.77e-07 1.34e-07 5.03e-08 1.82e-07 9.87e-08 9.91e-08 1.6e-07 5.48e-08 1.45e-07 5.67e-08 1.57e-07 1.08e-07 1.59e-07 7.13e-08 6.25e-08 7.23e-08 4.09e-08 1.4e-07 6.07e-08 4.78e-08 1.21e-07 1.24e-07 1.45e-07 2.64e-08 1.63e-07 1.25e-07 1.13e-07 9.92e-08 1.2e-07 1.07e-07 1.06e-07 3.59e-08 4.02e-08 8.11e-08 4.84e-08 3.14e-08 5.04e-08 8.93e-08 6.37e-08 4.47e-08 5.39e-08 1.46e-07 5.22e-08 1.26e-08 3.81e-08 1.89e-08 1.19e-07 1.88e-09 5.02e-08
ENSG00000184752 NDUFA12 286697 1.29e-06 1.07e-06 2.57e-07 1.07e-06 3.71e-07 6.01e-07 1.59e-06 3.56e-07 1.45e-06 5.15e-07 1.87e-06 7.85e-07 2.34e-06 2.89e-07 5.42e-07 9.78e-07 8.95e-07 7.78e-07 8.36e-07 6.16e-07 6.81e-07 1.7e-06 8.66e-07 6.23e-07 2.21e-06 5.53e-07 9.55e-07 8.53e-07 1.48e-06 1.31e-06 7.41e-07 2.58e-07 2.51e-07 6.69e-07 5.28e-07 4.28e-07 5.31e-07 2.38e-07 3.95e-07 3.11e-07 2.88e-07 1.6e-06 8.31e-08 5.71e-08 2.98e-07 1.2e-07 2.28e-07 3.66e-08 1.68e-07
ENSG00000236349 SUCLG2P2 742204 3.27e-07 1.51e-07 6.28e-08 2.15e-07 1.01e-07 8.33e-08 2.1e-07 5.62e-08 1.66e-07 8.53e-08 1.66e-07 1.37e-07 2.24e-07 8e-08 5.62e-08 9.11e-08 4.18e-08 1.77e-07 7.09e-08 5.87e-08 1.22e-07 1.47e-07 1.62e-07 3.49e-08 2.09e-07 1.31e-07 1.22e-07 1.17e-07 1.32e-07 1.06e-07 1.21e-07 4.69e-08 3.38e-08 9.76e-08 3.36e-08 3.05e-08 5.42e-08 8.37e-08 6.3e-08 5.35e-08 5.36e-08 1.59e-07 5.39e-08 1.17e-08 3.87e-08 1.01e-08 8.81e-08 1.98e-09 4.85e-08