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Genes within 1Mb (chr12:95212777:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT -4969 sc-eQTL 2.27e-01 0.251 0.207 0.05 CD4_CTL L2
ENSG00000111142 METAP2 -260743 sc-eQTL 5.05e-01 -0.145 0.217 0.05 CD4_CTL L2
ENSG00000111144 LTA4H -830743 sc-eQTL 1.21e-01 0.331 0.213 0.05 CD4_CTL L2
ENSG00000111145 ELK3 -981598 sc-eQTL 9.43e-01 -0.0156 0.217 0.05 CD4_CTL L2
ENSG00000120798 NR2C1 139149 sc-eQTL 4.54e-03 0.614 0.214 0.05 CD4_CTL L2
ENSG00000136014 USP44 -338699 sc-eQTL 7.46e-01 0.0561 0.173 0.05 CD4_CTL L2
ENSG00000139343 SNRPF -646151 sc-eQTL 6.97e-01 -0.0735 0.188 0.05 CD4_CTL L2
ENSG00000173588 CEP83 752789 sc-eQTL 1.25e-01 0.305 0.198 0.05 CD4_CTL L2
ENSG00000184752 NDUFA12 209029 sc-eQTL 7.39e-01 0.0598 0.179 0.05 CD4_CTL L2
ENSG00000028203 VEZT -4969 sc-eQTL 7.07e-01 0.0814 0.216 0.051 CD8_TCM L2
ENSG00000057704 TMCC3 562220 sc-eQTL 2.61e-01 0.187 0.166 0.051 CD8_TCM L2
ENSG00000111142 METAP2 -260743 sc-eQTL 6.45e-01 0.101 0.219 0.051 CD8_TCM L2
ENSG00000111144 LTA4H -830743 sc-eQTL 4.51e-01 0.163 0.215 0.051 CD8_TCM L2
ENSG00000111145 ELK3 -981598 sc-eQTL 7.12e-01 -0.0676 0.183 0.051 CD8_TCM L2
ENSG00000120798 NR2C1 139149 sc-eQTL 8.93e-01 -0.0298 0.22 0.051 CD8_TCM L2
ENSG00000136014 USP44 -338699 sc-eQTL 9.26e-01 -0.0183 0.198 0.051 CD8_TCM L2
ENSG00000139343 SNRPF -646151 sc-eQTL 3.23e-01 0.208 0.21 0.051 CD8_TCM L2
ENSG00000173588 CEP83 752789 sc-eQTL 9.27e-01 0.0197 0.214 0.051 CD8_TCM L2
ENSG00000184752 NDUFA12 209029 sc-eQTL 9.13e-01 -0.0189 0.172 0.051 CD8_TCM L2
ENSG00000028203 VEZT -4969 sc-eQTL 3.68e-01 -0.19 0.21 0.051 NK_CD56bright L2
ENSG00000057704 TMCC3 562220 sc-eQTL 6.23e-01 -0.0992 0.202 0.051 NK_CD56bright L2
ENSG00000111142 METAP2 -260743 sc-eQTL 1.70e-01 -0.284 0.206 0.051 NK_CD56bright L2
ENSG00000111144 LTA4H -830743 sc-eQTL 6.64e-02 0.333 0.18 0.051 NK_CD56bright L2
ENSG00000111145 ELK3 -981598 sc-eQTL 4.80e-01 0.136 0.193 0.051 NK_CD56bright L2
ENSG00000120798 NR2C1 139149 sc-eQTL 4.66e-01 -0.159 0.218 0.051 NK_CD56bright L2
ENSG00000139343 SNRPF -646151 sc-eQTL 6.89e-01 -0.0808 0.202 0.051 NK_CD56bright L2
ENSG00000173588 CEP83 752789 sc-eQTL 1.69e-01 0.248 0.18 0.051 NK_CD56bright L2
ENSG00000184752 NDUFA12 209029 sc-eQTL 8.26e-01 -0.038 0.173 0.051 NK_CD56bright L2
ENSG00000028203 VEZT -4969 sc-eQTL 5.43e-01 -0.134 0.221 0.053 NK_HLA L2
ENSG00000057704 TMCC3 562220 sc-eQTL 8.29e-01 0.0424 0.196 0.053 NK_HLA L2
ENSG00000111142 METAP2 -260743 sc-eQTL 6.14e-01 -0.104 0.206 0.053 NK_HLA L2
ENSG00000111144 LTA4H -830743 sc-eQTL 1.30e-01 0.324 0.213 0.053 NK_HLA L2
ENSG00000111145 ELK3 -981598 sc-eQTL 5.40e-01 -0.122 0.199 0.053 NK_HLA L2
ENSG00000120798 NR2C1 139149 sc-eQTL 2.42e-01 -0.254 0.216 0.053 NK_HLA L2
ENSG00000139343 SNRPF -646151 sc-eQTL 4.47e-01 0.158 0.207 0.053 NK_HLA L2
ENSG00000173588 CEP83 752789 sc-eQTL 6.74e-01 -0.0856 0.204 0.053 NK_HLA L2
ENSG00000184752 NDUFA12 209029 sc-eQTL 8.74e-01 -0.029 0.183 0.053 NK_HLA L2
ENSG00000028203 VEZT -4969 sc-eQTL 4.36e-01 0.196 0.251 0.052 gdT L2
ENSG00000057704 TMCC3 562220 sc-eQTL 6.04e-01 0.0999 0.192 0.052 gdT L2
ENSG00000074527 NTN4 -578375 sc-eQTL 7.97e-01 0.0493 0.191 0.052 gdT L2
ENSG00000111142 METAP2 -260743 sc-eQTL 3.88e-01 -0.206 0.238 0.052 gdT L2
ENSG00000111144 LTA4H -830743 sc-eQTL 2.19e-01 -0.306 0.248 0.052 gdT L2
ENSG00000111145 ELK3 -981598 sc-eQTL 5.35e-01 0.143 0.23 0.052 gdT L2
ENSG00000120798 NR2C1 139149 sc-eQTL 8.96e-01 -0.0333 0.255 0.052 gdT L2
ENSG00000139343 SNRPF -646151 sc-eQTL 4.65e-01 0.163 0.222 0.052 gdT L2
ENSG00000173588 CEP83 752789 sc-eQTL 2.59e-01 0.267 0.236 0.052 gdT L2
ENSG00000184752 NDUFA12 209029 sc-eQTL 7.11e-01 -0.0765 0.206 0.052 gdT L2
ENSG00000028203 VEZT -4969 sc-eQTL 5.51e-01 -0.136 0.228 0.054 pDC L2
ENSG00000057704 TMCC3 562220 sc-eQTL 1.45e-01 0.324 0.221 0.054 pDC L2
ENSG00000084110 HAL -783588 sc-eQTL 2.56e-01 -0.196 0.172 0.054 pDC L2
ENSG00000111142 METAP2 -260743 sc-eQTL 6.77e-01 -0.0974 0.233 0.054 pDC L2
ENSG00000111144 LTA4H -830743 sc-eQTL 8.45e-01 -0.0378 0.193 0.054 pDC L2
ENSG00000111145 ELK3 -981598 sc-eQTL 1.72e-01 0.322 0.235 0.054 pDC L2
ENSG00000120798 NR2C1 139149 sc-eQTL 4.52e-01 0.173 0.23 0.054 pDC L2
ENSG00000139343 SNRPF -646151 sc-eQTL 5.65e-01 0.119 0.206 0.054 pDC L2
ENSG00000173588 CEP83 752789 sc-eQTL 6.00e-01 -0.125 0.238 0.054 pDC L2
ENSG00000180263 FGD6 -4705 sc-eQTL 1.61e-01 -0.281 0.199 0.054 pDC L2
ENSG00000184752 NDUFA12 209029 sc-eQTL 6.02e-01 0.103 0.197 0.054 pDC L2
ENSG00000257715 AC007298.1 -812546 sc-eQTL 8.91e-01 0.0268 0.195 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 -981598 eQTL 0.0234 0.103 0.0453 0.0 0.0 0.0304
ENSG00000139344 AMDHD1 -730554 eQTL 0.00718 0.235 0.0871 0.0 0.0 0.0304
ENSG00000180263 FGD6 -4705 eQTL 0.00027 0.19 0.0521 0.0 0.0 0.0304
ENSG00000184752 NDUFA12 209029 eQTL 7.29e-05 0.191 0.048 0.0 0.0 0.0304
ENSG00000236349 SUCLG2P2 664536 eQTL 0.0205 0.141 0.0608 0.00104 0.0 0.0304

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 ELK3 -981598 2.76e-07 1.5e-07 3.71e-08 1.9e-07 9.21e-08 9.8e-08 1.67e-07 5.48e-08 1.45e-07 4.4e-08 1.52e-07 8.59e-08 1.52e-07 8.13e-08 5.91e-08 7.53e-08 4.01e-08 1.33e-07 5.97e-08 4.04e-08 1.25e-07 1.24e-07 1.44e-07 4.16e-08 1.68e-07 1.14e-07 1.1e-07 9.74e-08 1.09e-07 1.07e-07 9.92e-08 3.64e-08 3.3e-08 8.23e-08 4.84e-08 3.6e-08 5.59e-08 9.68e-08 6.55e-08 5.24e-08 4.36e-08 1.33e-07 2.94e-08 6.41e-08 5.43e-08 1.84e-08 1.24e-07 3.81e-09 4.85e-08
ENSG00000184752 NDUFA12 209029 5.93e-06 9.48e-06 8.35e-07 4.4e-06 1.43e-06 1.56e-06 6.63e-06 1.07e-06 4.67e-06 2.44e-06 6.85e-06 2.95e-06 7.74e-06 3.13e-06 1.04e-06 3.85e-06 2.75e-06 3.74e-06 1.57e-06 1.09e-06 3.15e-06 4.91e-06 4.62e-06 1.4e-06 1.03e-05 1.98e-06 2.24e-06 1.71e-06 4.51e-06 4.18e-06 2.8e-06 4.18e-07 7.75e-07 1.9e-06 2.6e-06 9e-07 9.28e-07 4.77e-07 1.06e-06 7.55e-07 2.08e-07 7.87e-06 8.18e-07 2.03e-07 4.86e-07 1.32e-06 9.78e-07 4.27e-07 2.1e-07
ENSG00000236349 SUCLG2P2 664536 6.8e-07 6.42e-07 6.57e-08 3.58e-07 1.07e-07 1.5e-07 4.42e-07 8.86e-08 2.53e-07 9.72e-08 3.92e-07 1.82e-07 4.34e-07 1.41e-07 1.24e-07 1.17e-07 2.34e-07 3.04e-07 1.5e-07 7.49e-08 1.91e-07 2.45e-07 2.33e-07 4.07e-08 7.42e-07 1.94e-07 1.97e-07 1.88e-07 1.76e-07 2.02e-07 1.88e-07 5.08e-08 4.74e-08 1.17e-07 3e-07 5.14e-08 8.07e-08 7.63e-08 5.27e-08 2.17e-08 5.3e-08 2.91e-07 5.37e-08 1.9e-07 4.36e-08 9.12e-09 7.66e-08 0.0 4.94e-08