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Genes within 1Mb (chr12:94934234:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT -283512 sc-eQTL 7.50e-01 -0.0613 0.193 0.052 DC L1
ENSG00000057704 TMCC3 283677 sc-eQTL 8.56e-01 -0.0372 0.204 0.052 DC L1
ENSG00000111142 METAP2 -539286 sc-eQTL 2.94e-01 0.212 0.201 0.052 DC L1
ENSG00000120798 NR2C1 -139394 sc-eQTL 2.21e-01 -0.24 0.195 0.052 DC L1
ENSG00000136040 PLXNC1 785657 sc-eQTL 3.72e-01 -0.163 0.182 0.052 DC L1
ENSG00000139343 SNRPF -924694 sc-eQTL 9.94e-01 0.00125 0.153 0.052 DC L1
ENSG00000173588 CEP83 474246 sc-eQTL 9.42e-01 -0.0119 0.163 0.052 DC L1
ENSG00000180263 FGD6 -283248 sc-eQTL 5.88e-01 0.0982 0.181 0.052 DC L1
ENSG00000184752 NDUFA12 -69514 sc-eQTL 2.29e-01 -0.183 0.152 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT -283512 sc-eQTL 8.06e-01 -0.0555 0.226 0.051 B_Activated L2
ENSG00000057704 TMCC3 283677 sc-eQTL 4.21e-01 0.155 0.192 0.051 B_Activated L2
ENSG00000111142 METAP2 -539286 sc-eQTL 3.55e-01 -0.218 0.235 0.051 B_Activated L2
ENSG00000120798 NR2C1 -139394 sc-eQTL 9.19e-01 0.0229 0.226 0.051 B_Activated L2
ENSG00000136014 USP44 -617242 sc-eQTL 4.56e-01 -0.129 0.172 0.051 B_Activated L2
ENSG00000136040 PLXNC1 785657 sc-eQTL 4.68e-01 0.132 0.182 0.051 B_Activated L2
ENSG00000139343 SNRPF -924694 sc-eQTL 8.32e-01 -0.045 0.212 0.051 B_Activated L2
ENSG00000173588 CEP83 474246 sc-eQTL 3.34e-02 -0.48 0.224 0.051 B_Activated L2
ENSG00000180263 FGD6 -283248 sc-eQTL 8.80e-01 0.0241 0.16 0.051 B_Activated L2
ENSG00000184752 NDUFA12 -69514 sc-eQTL 3.36e-01 -0.192 0.199 0.051 B_Activated L2
ENSG00000028203 VEZT -283512 sc-eQTL 4.68e-02 0.418 0.209 0.051 CD8_TCM L2
ENSG00000057704 TMCC3 283677 sc-eQTL 3.74e-01 0.145 0.162 0.051 CD8_TCM L2
ENSG00000111142 METAP2 -539286 sc-eQTL 9.82e-01 0.00494 0.214 0.051 CD8_TCM L2
ENSG00000120798 NR2C1 -139394 sc-eQTL 1.19e-01 -0.335 0.214 0.051 CD8_TCM L2
ENSG00000136014 USP44 -617242 sc-eQTL 9.17e-01 0.0202 0.193 0.051 CD8_TCM L2
ENSG00000136040 PLXNC1 785657 sc-eQTL 3.87e-01 0.176 0.203 0.051 CD8_TCM L2
ENSG00000139343 SNRPF -924694 sc-eQTL 4.39e-01 -0.159 0.205 0.051 CD8_TCM L2
ENSG00000173588 CEP83 474246 sc-eQTL 4.93e-01 -0.143 0.209 0.051 CD8_TCM L2
ENSG00000184752 NDUFA12 -69514 sc-eQTL 2.42e-02 0.377 0.166 0.051 CD8_TCM L2
ENSG00000028203 VEZT -283512 sc-eQTL 4.61e-01 0.156 0.211 0.051 NK_CD56bright L2
ENSG00000057704 TMCC3 283677 sc-eQTL 9.42e-01 -0.0148 0.202 0.051 NK_CD56bright L2
ENSG00000111142 METAP2 -539286 sc-eQTL 2.50e-01 -0.239 0.207 0.051 NK_CD56bright L2
ENSG00000120798 NR2C1 -139394 sc-eQTL 1.16e-01 -0.343 0.217 0.051 NK_CD56bright L2
ENSG00000136040 PLXNC1 785657 sc-eQTL 7.24e-01 0.0633 0.179 0.051 NK_CD56bright L2
ENSG00000139343 SNRPF -924694 sc-eQTL 6.02e-01 0.106 0.202 0.051 NK_CD56bright L2
ENSG00000173588 CEP83 474246 sc-eQTL 3.10e-01 -0.184 0.181 0.051 NK_CD56bright L2
ENSG00000184752 NDUFA12 -69514 sc-eQTL 6.74e-01 -0.0732 0.174 0.051 NK_CD56bright L2
ENSG00000028203 VEZT -283512 sc-eQTL 8.75e-01 -0.0386 0.245 0.056 PB L2
ENSG00000057704 TMCC3 283677 sc-eQTL 9.71e-01 0.00815 0.221 0.056 PB L2
ENSG00000111142 METAP2 -539286 sc-eQTL 1.96e-01 0.316 0.243 0.056 PB L2
ENSG00000120798 NR2C1 -139394 sc-eQTL 6.51e-01 0.105 0.232 0.056 PB L2
ENSG00000136014 USP44 -617242 sc-eQTL 3.32e-01 0.212 0.218 0.056 PB L2
ENSG00000136040 PLXNC1 785657 sc-eQTL 9.07e-01 0.0265 0.226 0.056 PB L2
ENSG00000139343 SNRPF -924694 sc-eQTL 6.42e-01 -0.107 0.23 0.056 PB L2
ENSG00000173588 CEP83 474246 sc-eQTL 8.61e-02 -0.402 0.232 0.056 PB L2
ENSG00000180263 FGD6 -283248 sc-eQTL 4.23e-01 -0.157 0.195 0.056 PB L2
ENSG00000184752 NDUFA12 -69514 sc-eQTL 9.26e-01 0.0128 0.137 0.056 PB L2
ENSG00000028203 VEZT -283512 sc-eQTL 9.76e-01 -0.00621 0.205 0.05 Pro_T L2
ENSG00000057704 TMCC3 283677 sc-eQTL 3.34e-01 0.177 0.183 0.05 Pro_T L2
ENSG00000074527 NTN4 -856918 sc-eQTL 5.06e-01 0.0994 0.149 0.05 Pro_T L2
ENSG00000111142 METAP2 -539286 sc-eQTL 4.61e-01 0.13 0.176 0.05 Pro_T L2
ENSG00000120798 NR2C1 -139394 sc-eQTL 3.89e-01 0.183 0.212 0.05 Pro_T L2
ENSG00000136040 PLXNC1 785657 sc-eQTL 8.46e-01 0.0404 0.208 0.05 Pro_T L2
ENSG00000139343 SNRPF -924694 sc-eQTL 7.74e-01 -0.0385 0.134 0.05 Pro_T L2
ENSG00000173588 CEP83 474246 sc-eQTL 9.27e-01 -0.0188 0.206 0.05 Pro_T L2
ENSG00000184752 NDUFA12 -69514 sc-eQTL 3.98e-01 0.109 0.128 0.05 Pro_T L2
ENSG00000028203 VEZT -283512 sc-eQTL 7.16e-01 -0.0707 0.194 0.054 cDC L2
ENSG00000057704 TMCC3 283677 sc-eQTL 8.09e-01 0.0505 0.209 0.054 cDC L2
ENSG00000111142 METAP2 -539286 sc-eQTL 6.71e-01 -0.0902 0.212 0.054 cDC L2
ENSG00000120798 NR2C1 -139394 sc-eQTL 2.01e-01 -0.262 0.204 0.054 cDC L2
ENSG00000136040 PLXNC1 785657 sc-eQTL 8.42e-01 -0.0363 0.182 0.054 cDC L2
ENSG00000139343 SNRPF -924694 sc-eQTL 7.46e-01 0.054 0.167 0.054 cDC L2
ENSG00000173588 CEP83 474246 sc-eQTL 1.22e-01 0.264 0.17 0.054 cDC L2
ENSG00000180263 FGD6 -283248 sc-eQTL 8.50e-01 0.0372 0.197 0.054 cDC L2
ENSG00000184752 NDUFA12 -69514 sc-eQTL 1.16e-01 -0.263 0.166 0.054 cDC L2
ENSG00000028203 VEZT -283512 sc-eQTL 9.61e-01 -0.0101 0.207 0.052 ncMono L2
ENSG00000057704 TMCC3 283677 sc-eQTL 8.56e-01 0.0363 0.199 0.052 ncMono L2
ENSG00000111142 METAP2 -539286 sc-eQTL 1.83e-01 0.288 0.216 0.052 ncMono L2
ENSG00000120798 NR2C1 -139394 sc-eQTL 3.75e-01 -0.191 0.215 0.052 ncMono L2
ENSG00000136040 PLXNC1 785657 sc-eQTL 4.89e-01 -0.095 0.137 0.052 ncMono L2
ENSG00000139343 SNRPF -924694 sc-eQTL 2.19e-01 -0.216 0.175 0.052 ncMono L2
ENSG00000173588 CEP83 474246 sc-eQTL 3.25e-01 -0.211 0.214 0.052 ncMono L2
ENSG00000180263 FGD6 -283248 sc-eQTL 4.18e-01 0.165 0.204 0.052 ncMono L2
ENSG00000184752 NDUFA12 -69514 sc-eQTL 4.94e-01 -0.124 0.181 0.052 ncMono L2
ENSG00000028203 VEZT -283512 sc-eQTL 8.95e-01 -0.0308 0.232 0.054 pDC L2
ENSG00000057704 TMCC3 283677 sc-eQTL 5.08e-01 -0.15 0.226 0.054 pDC L2
ENSG00000111142 METAP2 -539286 sc-eQTL 6.16e-01 -0.119 0.237 0.054 pDC L2
ENSG00000120798 NR2C1 -139394 sc-eQTL 9.53e-01 -0.0138 0.234 0.054 pDC L2
ENSG00000136040 PLXNC1 785657 sc-eQTL 3.91e-01 -0.193 0.225 0.054 pDC L2
ENSG00000139343 SNRPF -924694 sc-eQTL 4.64e-01 -0.154 0.209 0.054 pDC L2
ENSG00000173588 CEP83 474246 sc-eQTL 7.93e-02 -0.424 0.24 0.054 pDC L2
ENSG00000180263 FGD6 -283248 sc-eQTL 1.20e-01 -0.316 0.202 0.054 pDC L2
ENSG00000184752 NDUFA12 -69514 sc-eQTL 4.12e-01 -0.165 0.2 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000139343 SNRPF -924694 eQTL 0.0214 -0.0388 0.0168 0.00151 0.0 0.0662
ENSG00000180263 FGD6 -283248 eQTL 9.72e-06 -0.165 0.0372 0.0 0.0 0.0662
ENSG00000184752 NDUFA12 -69514 eQTL 1.56e-05 -0.149 0.0343 0.0 0.0 0.0662

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000180263 FGD6 -283248 1.4e-06 2.06e-06 2.29e-07 1.25e-06 3.58e-07 6.48e-07 1.36e-06 4.04e-07 1.75e-06 6.69e-07 2.02e-06 1.3e-06 2.63e-06 5.86e-07 3.44e-07 9.55e-07 9.41e-07 1.05e-06 5.81e-07 4.51e-07 7.41e-07 1.92e-06 1.17e-06 6.2e-07 2.32e-06 6.57e-07 1.06e-06 9.81e-07 1.63e-06 1.3e-06 8.43e-07 2.44e-07 2.88e-07 7.02e-07 7.08e-07 5.24e-07 6.99e-07 3.42e-07 5.05e-07 1.85e-07 2.84e-07 2.41e-06 2.91e-07 1.32e-07 1.65e-07 2.36e-07 3.5e-07 1.38e-07 1.9e-07
ENSG00000184752 NDUFA12 -69514 1.11e-05 1.29e-05 1.92e-06 8.21e-06 2.41e-06 5.43e-06 1.55e-05 2.14e-06 1.18e-05 6.2e-06 1.6e-05 6.72e-06 2.02e-05 4.76e-06 4.13e-06 8.04e-06 6.37e-06 9.78e-06 3.32e-06 3.14e-06 6.79e-06 1.12e-05 1.13e-05 3.69e-06 2.27e-05 4.35e-06 6.97e-06 5.42e-06 1.37e-05 9.87e-06 7.81e-06 1.06e-06 1.2e-06 3.78e-06 5.84e-06 2.82e-06 1.84e-06 2.03e-06 2.06e-06 1.56e-06 9.63e-07 1.68e-05 1.61e-06 1.97e-07 8.04e-07 2.02e-06 2.05e-06 6.16e-07 4.55e-07