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Genes within 1Mb (chr12:94930320:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT -287426 sc-eQTL 4.46e-01 0.161 0.211 0.051 CD8_TCM L2
ENSG00000057704 TMCC3 279763 sc-eQTL 7.41e-01 -0.0539 0.163 0.051 CD8_TCM L2
ENSG00000111142 METAP2 -543200 sc-eQTL 5.26e-01 0.136 0.214 0.051 CD8_TCM L2
ENSG00000120798 NR2C1 -143308 sc-eQTL 8.92e-01 0.0294 0.215 0.051 CD8_TCM L2
ENSG00000136014 USP44 -621156 sc-eQTL 4.44e-01 -0.148 0.193 0.051 CD8_TCM L2
ENSG00000136040 PLXNC1 781743 sc-eQTL 7.01e-01 -0.0783 0.204 0.051 CD8_TCM L2
ENSG00000139343 SNRPF -928608 sc-eQTL 6.54e-01 -0.092 0.205 0.051 CD8_TCM L2
ENSG00000173588 CEP83 470332 sc-eQTL 8.86e-01 -0.0301 0.209 0.051 CD8_TCM L2
ENSG00000184752 NDUFA12 -73428 sc-eQTL 6.36e-01 -0.0798 0.168 0.051 CD8_TCM L2
ENSG00000028203 VEZT -287426 sc-eQTL 5.65e-01 -0.131 0.227 0.05 NK_HLA L2
ENSG00000057704 TMCC3 279763 sc-eQTL 8.85e-01 -0.0292 0.202 0.05 NK_HLA L2
ENSG00000111142 METAP2 -543200 sc-eQTL 2.97e-01 -0.221 0.212 0.05 NK_HLA L2
ENSG00000120798 NR2C1 -143308 sc-eQTL 4.00e-01 -0.188 0.223 0.05 NK_HLA L2
ENSG00000136040 PLXNC1 781743 sc-eQTL 8.23e-01 -0.0409 0.183 0.05 NK_HLA L2
ENSG00000139343 SNRPF -928608 sc-eQTL 9.47e-01 0.0142 0.213 0.05 NK_HLA L2
ENSG00000173588 CEP83 470332 sc-eQTL 3.70e-01 0.188 0.209 0.05 NK_HLA L2
ENSG00000184752 NDUFA12 -73428 sc-eQTL 5.94e-01 -0.101 0.189 0.05 NK_HLA L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000136014 USP44 -621156 eQTL 0.00303 0.251 0.0845 0.0 0.0 0.0275
ENSG00000184752 NDUFA12 -73428 eQTL 0.0331 -0.114 0.0534 0.0 0.0 0.0275
ENSG00000258357 AC023161.2 408451 eQTL 0.0444 -0.192 0.0953 0.0 0.0 0.0275

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000057704 \N 279763 1.31e-06 1.01e-06 6.52e-07 4.32e-07 1.08e-07 2.46e-07 7.1e-07 5.37e-08 3.17e-07 1.03e-07 6.88e-07 1.96e-07 8.6e-07 1.54e-07 2.48e-07 2.18e-07 3.52e-07 5.26e-07 2.65e-07 1.3e-07 2.3e-07 5.5e-07 3.69e-07 4.37e-08 9.15e-07 2.01e-07 2.22e-07 1.95e-07 2.76e-07 5.56e-07 1.93e-07 3.95e-08 4.37e-08 1.37e-07 3.05e-07 3.18e-08 1.05e-07 8.72e-08 5.59e-08 4.55e-08 3.82e-08 8.45e-07 3.19e-08 1.23e-08 4.92e-08 8.07e-09 8.74e-08 4.41e-09 5.04e-08