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Genes within 1Mb (chr12:94561809:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT -655937 sc-eQTL 6.56e-01 0.0825 0.185 0.052 DC L1
ENSG00000057704 TMCC3 -88748 sc-eQTL 4.09e-01 0.162 0.196 0.052 DC L1
ENSG00000111142 METAP2 -911711 sc-eQTL 8.08e-01 0.0472 0.194 0.052 DC L1
ENSG00000120798 NR2C1 -511819 sc-eQTL 5.18e-01 -0.122 0.188 0.052 DC L1
ENSG00000136040 PLXNC1 413232 sc-eQTL 9.91e-01 0.00199 0.175 0.052 DC L1
ENSG00000169372 CRADD 884434 sc-eQTL 1.22e-01 -0.306 0.197 0.052 DC L1
ENSG00000173588 CEP83 101821 sc-eQTL 7.88e-01 -0.0421 0.156 0.052 DC L1
ENSG00000180263 FGD6 -655673 sc-eQTL 8.33e-01 -0.0366 0.174 0.052 DC L1
ENSG00000184752 NDUFA12 -441939 sc-eQTL 4.40e-01 -0.113 0.146 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT -655937 sc-eQTL 7.71e-01 0.0598 0.205 0.05 CD4_CTL L2
ENSG00000111142 METAP2 -911711 sc-eQTL 6.77e-01 -0.0893 0.214 0.05 CD4_CTL L2
ENSG00000120798 NR2C1 -511819 sc-eQTL 9.72e-01 -0.00754 0.215 0.05 CD4_CTL L2
ENSG00000120833 SOCS2 991995 sc-eQTL 7.19e-01 0.0724 0.201 0.05 CD4_CTL L2
ENSG00000136014 USP44 -989667 sc-eQTL 6.06e-01 0.088 0.17 0.05 CD4_CTL L2
ENSG00000136040 PLXNC1 413232 sc-eQTL 1.15e-01 0.301 0.19 0.05 CD4_CTL L2
ENSG00000169372 CRADD 884434 sc-eQTL 6.36e-01 0.092 0.194 0.05 CD4_CTL L2
ENSG00000173588 CEP83 101821 sc-eQTL 7.18e-01 0.0706 0.196 0.05 CD4_CTL L2
ENSG00000184752 NDUFA12 -441939 sc-eQTL 6.83e-01 0.072 0.176 0.05 CD4_CTL L2
ENSG00000028203 VEZT -655937 sc-eQTL 3.75e-01 -0.186 0.209 0.053 CD8_TEM L2
ENSG00000057704 TMCC3 -88748 sc-eQTL 4.87e-01 -0.125 0.18 0.053 CD8_TEM L2
ENSG00000111142 METAP2 -911711 sc-eQTL 5.82e-01 0.112 0.203 0.053 CD8_TEM L2
ENSG00000120798 NR2C1 -511819 sc-eQTL 2.80e-01 -0.23 0.213 0.053 CD8_TEM L2
ENSG00000120833 SOCS2 991995 sc-eQTL 8.91e-01 -0.0262 0.192 0.053 CD8_TEM L2
ENSG00000136014 USP44 -989667 sc-eQTL 7.36e-01 -0.0599 0.177 0.053 CD8_TEM L2
ENSG00000136040 PLXNC1 413232 sc-eQTL 3.26e-01 0.198 0.201 0.053 CD8_TEM L2
ENSG00000169372 CRADD 884434 sc-eQTL 1.81e-02 0.502 0.211 0.053 CD8_TEM L2
ENSG00000173588 CEP83 101821 sc-eQTL 1.58e-01 0.294 0.207 0.053 CD8_TEM L2
ENSG00000184752 NDUFA12 -441939 sc-eQTL 5.47e-01 -0.107 0.178 0.053 CD8_TEM L2
ENSG00000028203 VEZT -655937 sc-eQTL 7.04e-01 -0.0769 0.202 0.051 NK_CD56bright L2
ENSG00000057704 TMCC3 -88748 sc-eQTL 3.55e-01 0.179 0.193 0.051 NK_CD56bright L2
ENSG00000111142 METAP2 -911711 sc-eQTL 1.21e-01 0.307 0.197 0.051 NK_CD56bright L2
ENSG00000120798 NR2C1 -511819 sc-eQTL 4.52e-01 -0.157 0.208 0.051 NK_CD56bright L2
ENSG00000120833 SOCS2 991995 sc-eQTL 2.27e-01 0.212 0.175 0.051 NK_CD56bright L2
ENSG00000136040 PLXNC1 413232 sc-eQTL 6.38e-01 -0.0806 0.171 0.051 NK_CD56bright L2
ENSG00000169372 CRADD 884434 sc-eQTL 8.58e-01 -0.0374 0.208 0.051 NK_CD56bright L2
ENSG00000173588 CEP83 101821 sc-eQTL 3.08e-01 -0.177 0.173 0.051 NK_CD56bright L2
ENSG00000184752 NDUFA12 -441939 sc-eQTL 4.00e-01 0.14 0.166 0.051 NK_CD56bright L2
ENSG00000246985 SOCS2-AS1 990041 sc-eQTL 5.79e-01 0.101 0.182 0.051 NK_CD56bright L2
ENSG00000028203 VEZT -655937 sc-eQTL 4.57e-01 0.137 0.184 0.056 cDC L2
ENSG00000057704 TMCC3 -88748 sc-eQTL 2.25e-01 0.241 0.198 0.056 cDC L2
ENSG00000111142 METAP2 -911711 sc-eQTL 5.52e-01 0.12 0.202 0.056 cDC L2
ENSG00000120798 NR2C1 -511819 sc-eQTL 9.50e-01 -0.0123 0.195 0.056 cDC L2
ENSG00000136040 PLXNC1 413232 sc-eQTL 6.36e-01 0.0823 0.174 0.056 cDC L2
ENSG00000169372 CRADD 884434 sc-eQTL 1.05e-01 -0.311 0.191 0.056 cDC L2
ENSG00000173588 CEP83 101821 sc-eQTL 8.52e-01 -0.0304 0.163 0.056 cDC L2
ENSG00000180263 FGD6 -655673 sc-eQTL 9.48e-01 -0.0123 0.187 0.056 cDC L2
ENSG00000184752 NDUFA12 -441939 sc-eQTL 1.82e-01 -0.212 0.158 0.056 cDC L2
ENSG00000028203 VEZT -655937 sc-eQTL 2.69e-02 0.417 0.187 0.052 ncMono L2
ENSG00000057704 TMCC3 -88748 sc-eQTL 7.04e-01 0.0694 0.183 0.052 ncMono L2
ENSG00000111142 METAP2 -911711 sc-eQTL 9.06e-01 0.0234 0.199 0.052 ncMono L2
ENSG00000120798 NR2C1 -511819 sc-eQTL 8.89e-01 -0.0276 0.197 0.052 ncMono L2
ENSG00000136040 PLXNC1 413232 sc-eQTL 9.37e-01 -0.00995 0.126 0.052 ncMono L2
ENSG00000169372 CRADD 884434 sc-eQTL 5.72e-01 -0.111 0.196 0.052 ncMono L2
ENSG00000173588 CEP83 101821 sc-eQTL 8.45e-01 0.0386 0.197 0.052 ncMono L2
ENSG00000180263 FGD6 -655673 sc-eQTL 2.61e-01 0.21 0.186 0.052 ncMono L2
ENSG00000184752 NDUFA12 -441939 sc-eQTL 9.59e-01 0.00854 0.166 0.052 ncMono L2
ENSG00000028203 VEZT -655937 sc-eQTL 9.40e-01 0.0166 0.218 0.065 pDC L2
ENSG00000057704 TMCC3 -88748 sc-eQTL 8.55e-01 -0.0389 0.212 0.065 pDC L2
ENSG00000111142 METAP2 -911711 sc-eQTL 6.35e-01 0.106 0.222 0.065 pDC L2
ENSG00000120798 NR2C1 -511819 sc-eQTL 3.03e-01 -0.227 0.219 0.065 pDC L2
ENSG00000136040 PLXNC1 413232 sc-eQTL 7.28e-01 -0.0735 0.211 0.065 pDC L2
ENSG00000169372 CRADD 884434 sc-eQTL 6.90e-01 -0.0853 0.214 0.065 pDC L2
ENSG00000173588 CEP83 101821 sc-eQTL 9.34e-01 -0.0189 0.227 0.065 pDC L2
ENSG00000180263 FGD6 -655673 sc-eQTL 9.23e-01 0.0185 0.191 0.065 pDC L2
ENSG00000184752 NDUFA12 -441939 sc-eQTL 4.20e-01 -0.152 0.188 0.065 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000057704 TMCC3 -88748 eQTL 0.0132 0.065 0.0262 0.0 0.0 0.0638
ENSG00000173588 CEP83 101821 eQTL 0.0115 0.126 0.0499 0.00172 0.0 0.0638
ENSG00000186076 AC012085.1 920223 eQTL 2.64e-02 -0.157 0.0704 0.0 0.0 0.0638
ENSG00000236349 SUCLG2P2 13568 eQTL 0.0545 -0.0865 0.0449 0.00145 0.0 0.0638

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina