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Genes within 1Mb (chr12:94528127:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT -689619 sc-eQTL 3.34e-01 0.21 0.217 0.054 B_Activated L2
ENSG00000057704 TMCC3 -122430 sc-eQTL 1.99e-01 0.238 0.185 0.054 B_Activated L2
ENSG00000111142 METAP2 -945393 sc-eQTL 3.42e-02 0.478 0.224 0.054 B_Activated L2
ENSG00000120798 NR2C1 -545501 sc-eQTL 1.85e-01 0.288 0.217 0.054 B_Activated L2
ENSG00000136040 PLXNC1 379550 sc-eQTL 9.25e-01 -0.0165 0.175 0.054 B_Activated L2
ENSG00000169372 CRADD 850752 sc-eQTL 4.34e-01 0.161 0.205 0.054 B_Activated L2
ENSG00000173588 CEP83 68139 sc-eQTL 5.07e-01 -0.145 0.218 0.054 B_Activated L2
ENSG00000180263 FGD6 -689355 sc-eQTL 5.31e-01 -0.0965 0.154 0.054 B_Activated L2
ENSG00000184752 NDUFA12 -475621 sc-eQTL 7.81e-01 0.0537 0.192 0.054 B_Activated L2
ENSG00000028203 VEZT -689619 sc-eQTL 5.95e-02 -0.39 0.206 0.05 CD4_CTL L2
ENSG00000111142 METAP2 -945393 sc-eQTL 6.53e-01 -0.0976 0.217 0.05 CD4_CTL L2
ENSG00000120798 NR2C1 -545501 sc-eQTL 2.00e-01 0.279 0.217 0.05 CD4_CTL L2
ENSG00000120833 SOCS2 958313 sc-eQTL 1.35e-01 0.304 0.203 0.05 CD4_CTL L2
ENSG00000136040 PLXNC1 379550 sc-eQTL 6.14e-01 -0.0982 0.194 0.05 CD4_CTL L2
ENSG00000169372 CRADD 850752 sc-eQTL 8.88e-01 0.0277 0.197 0.05 CD4_CTL L2
ENSG00000173588 CEP83 68139 sc-eQTL 3.90e-01 -0.171 0.198 0.05 CD4_CTL L2
ENSG00000184752 NDUFA12 -475621 sc-eQTL 5.61e-01 0.104 0.179 0.05 CD4_CTL L2
ENSG00000028203 VEZT -689619 sc-eQTL 6.68e-01 0.0887 0.207 0.051 NK_CD56bright L2
ENSG00000057704 TMCC3 -122430 sc-eQTL 9.91e-01 -0.00213 0.198 0.051 NK_CD56bright L2
ENSG00000111142 METAP2 -945393 sc-eQTL 2.68e-01 -0.225 0.203 0.051 NK_CD56bright L2
ENSG00000120798 NR2C1 -545501 sc-eQTL 7.60e-01 -0.0653 0.214 0.051 NK_CD56bright L2
ENSG00000120833 SOCS2 958313 sc-eQTL 4.40e-01 0.139 0.18 0.051 NK_CD56bright L2
ENSG00000136040 PLXNC1 379550 sc-eQTL 9.83e-01 -0.00364 0.175 0.051 NK_CD56bright L2
ENSG00000169372 CRADD 850752 sc-eQTL 8.81e-01 -0.032 0.213 0.051 NK_CD56bright L2
ENSG00000173588 CEP83 68139 sc-eQTL 3.68e-01 -0.16 0.177 0.051 NK_CD56bright L2
ENSG00000184752 NDUFA12 -475621 sc-eQTL 9.53e-02 -0.283 0.169 0.051 NK_CD56bright L2
ENSG00000246985 SOCS2-AS1 956359 sc-eQTL 8.45e-01 -0.0367 0.187 0.051 NK_CD56bright L2
ENSG00000028203 VEZT -689619 sc-eQTL 9.42e-01 0.0163 0.223 0.05 NK_HLA L2
ENSG00000057704 TMCC3 -122430 sc-eQTL 1.88e-01 -0.26 0.197 0.05 NK_HLA L2
ENSG00000111142 METAP2 -945393 sc-eQTL 3.15e-01 0.209 0.207 0.05 NK_HLA L2
ENSG00000120798 NR2C1 -545501 sc-eQTL 9.76e-02 -0.362 0.218 0.05 NK_HLA L2
ENSG00000120833 SOCS2 958313 sc-eQTL 3.71e-01 0.175 0.196 0.05 NK_HLA L2
ENSG00000136040 PLXNC1 379550 sc-eQTL 2.27e-01 -0.216 0.178 0.05 NK_HLA L2
ENSG00000169372 CRADD 850752 sc-eQTL 7.09e-01 0.082 0.219 0.05 NK_HLA L2
ENSG00000173588 CEP83 68139 sc-eQTL 1.71e-01 0.281 0.205 0.05 NK_HLA L2
ENSG00000184752 NDUFA12 -475621 sc-eQTL 4.23e-01 0.148 0.185 0.05 NK_HLA L2
ENSG00000246985 SOCS2-AS1 956359 sc-eQTL 9.86e-01 -0.00326 0.185 0.05 NK_HLA L2
ENSG00000028203 VEZT -689619 sc-eQTL 4.57e-01 0.188 0.251 0.056 PB L2
ENSG00000057704 TMCC3 -122430 sc-eQTL 8.53e-01 0.0421 0.227 0.056 PB L2
ENSG00000111142 METAP2 -945393 sc-eQTL 7.02e-01 0.0963 0.251 0.056 PB L2
ENSG00000120798 NR2C1 -545501 sc-eQTL 2.45e-02 -0.533 0.234 0.056 PB L2
ENSG00000136040 PLXNC1 379550 sc-eQTL 6.47e-01 0.107 0.232 0.056 PB L2
ENSG00000169372 CRADD 850752 sc-eQTL 8.14e-01 0.0505 0.214 0.056 PB L2
ENSG00000173588 CEP83 68139 sc-eQTL 1.65e-01 -0.335 0.24 0.056 PB L2
ENSG00000180263 FGD6 -689355 sc-eQTL 1.50e-01 0.289 0.199 0.056 PB L2
ENSG00000184752 NDUFA12 -475621 sc-eQTL 1.27e-01 0.215 0.14 0.056 PB L2
ENSG00000028203 VEZT -689619 sc-eQTL 2.59e-01 -0.224 0.198 0.05 Pro_T L2
ENSG00000057704 TMCC3 -122430 sc-eQTL 8.50e-01 0.0335 0.177 0.05 Pro_T L2
ENSG00000111142 METAP2 -945393 sc-eQTL 9.62e-01 -0.00815 0.171 0.05 Pro_T L2
ENSG00000120798 NR2C1 -545501 sc-eQTL 4.13e-01 -0.169 0.206 0.05 Pro_T L2
ENSG00000120833 SOCS2 958313 sc-eQTL 9.64e-01 0.00858 0.19 0.05 Pro_T L2
ENSG00000136040 PLXNC1 379550 sc-eQTL 1.25e-01 0.309 0.201 0.05 Pro_T L2
ENSG00000169372 CRADD 850752 sc-eQTL 2.34e-02 0.444 0.195 0.05 Pro_T L2
ENSG00000173588 CEP83 68139 sc-eQTL 6.56e-01 -0.0889 0.2 0.05 Pro_T L2
ENSG00000184752 NDUFA12 -475621 sc-eQTL 7.45e-01 -0.0406 0.125 0.05 Pro_T L2
ENSG00000028203 VEZT -689619 sc-eQTL 4.90e-01 0.171 0.248 0.052 gdT L2
ENSG00000057704 TMCC3 -122430 sc-eQTL 8.84e-01 -0.0277 0.19 0.052 gdT L2
ENSG00000111142 METAP2 -945393 sc-eQTL 4.72e-02 -0.466 0.233 0.052 gdT L2
ENSG00000120798 NR2C1 -545501 sc-eQTL 3.41e-01 -0.24 0.251 0.052 gdT L2
ENSG00000120833 SOCS2 958313 sc-eQTL 8.19e-01 -0.0523 0.229 0.052 gdT L2
ENSG00000136040 PLXNC1 379550 sc-eQTL 4.49e-01 0.181 0.239 0.052 gdT L2
ENSG00000169372 CRADD 850752 sc-eQTL 6.37e-01 -0.111 0.235 0.052 gdT L2
ENSG00000173588 CEP83 68139 sc-eQTL 2.98e-01 0.243 0.233 0.052 gdT L2
ENSG00000184752 NDUFA12 -475621 sc-eQTL 2.89e-01 0.215 0.203 0.052 gdT L2
ENSG00000028203 VEZT -689619 sc-eQTL 9.41e-01 -0.0163 0.22 0.051 pDC L2
ENSG00000057704 TMCC3 -122430 sc-eQTL 4.16e-01 -0.175 0.214 0.051 pDC L2
ENSG00000111142 METAP2 -945393 sc-eQTL 8.96e-01 -0.0295 0.225 0.051 pDC L2
ENSG00000120798 NR2C1 -545501 sc-eQTL 9.15e-01 0.0237 0.222 0.051 pDC L2
ENSG00000136040 PLXNC1 379550 sc-eQTL 8.82e-01 0.0316 0.214 0.051 pDC L2
ENSG00000169372 CRADD 850752 sc-eQTL 4.77e-01 0.154 0.216 0.051 pDC L2
ENSG00000173588 CEP83 68139 sc-eQTL 5.24e-01 -0.147 0.23 0.051 pDC L2
ENSG00000180263 FGD6 -689355 sc-eQTL 4.50e-01 -0.146 0.193 0.051 pDC L2
ENSG00000184752 NDUFA12 -475621 sc-eQTL 7.94e-01 0.0498 0.191 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000057704 TMCC3 -122430 eQTL 0.0441 -0.0672 0.0333 0.0 0.0 0.0447
ENSG00000111142 METAP2 -945393 eQTL 4.13e-05 -0.0927 0.0225 0.058 0.0252 0.0447

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000258303 \N 691960 3.02e-07 1.5e-07 6.26e-08 2.15e-07 1.01e-07 8.37e-08 1.99e-07 5.78e-08 1.59e-07 9.35e-08 1.61e-07 1.22e-07 2.05e-07 8.13e-08 5.43e-08 8.71e-08 4.31e-08 1.77e-07 7.16e-08 5.46e-08 1.18e-07 1.47e-07 1.58e-07 3.42e-08 1.98e-07 1.31e-07 1.19e-07 1.12e-07 1.31e-07 1.17e-07 1.14e-07 3.66e-08 3.46e-08 9.8e-08 3.57e-08 2.79e-08 4.62e-08 8.17e-08 6.28e-08 5.24e-08 5.71e-08 1.52e-07 4.87e-08 1.43e-08 3.55e-08 1.19e-08 7.92e-08 1.98e-09 4.98e-08