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Genes within 1Mb (chr12:94459807:G:GGGC):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028203 VEZT -757939 sc-eQTL 9.80e-01 -0.00506 0.205 0.052 CD4_CTL L2
ENSG00000120798 NR2C1 -613821 sc-eQTL 3.99e-02 0.441 0.213 0.052 CD4_CTL L2
ENSG00000120833 SOCS2 889993 sc-eQTL 2.10e-01 -0.252 0.201 0.052 CD4_CTL L2
ENSG00000136040 PLXNC1 311230 sc-eQTL 7.37e-01 -0.0645 0.192 0.052 CD4_CTL L2
ENSG00000169372 CRADD 782432 sc-eQTL 7.53e-01 0.0614 0.195 0.052 CD4_CTL L2
ENSG00000173588 CEP83 -181 sc-eQTL 9.26e-01 -0.0183 0.196 0.052 CD4_CTL L2
ENSG00000184752 NDUFA12 -543941 sc-eQTL 3.35e-01 0.17 0.176 0.052 CD4_CTL L2
ENSG00000198015 MRPL42 992319 sc-eQTL 8.93e-01 0.0292 0.218 0.052 CD4_CTL L2
ENSG00000028203 VEZT -757939 sc-eQTL 3.19e-01 0.208 0.208 0.053 CD8_TCM L2
ENSG00000057704 TMCC3 -190750 sc-eQTL 9.51e-01 0.00996 0.161 0.053 CD8_TCM L2
ENSG00000120798 NR2C1 -613821 sc-eQTL 9.95e-01 -0.00142 0.213 0.053 CD8_TCM L2
ENSG00000120833 SOCS2 889993 sc-eQTL 6.61e-01 -0.0789 0.179 0.053 CD8_TCM L2
ENSG00000136040 PLXNC1 311230 sc-eQTL 2.92e-01 0.212 0.201 0.053 CD8_TCM L2
ENSG00000169372 CRADD 782432 sc-eQTL 7.80e-01 0.0597 0.213 0.053 CD8_TCM L2
ENSG00000173588 CEP83 -181 sc-eQTL 3.98e-01 -0.175 0.207 0.053 CD8_TCM L2
ENSG00000184752 NDUFA12 -543941 sc-eQTL 4.01e-01 0.14 0.166 0.053 CD8_TCM L2
ENSG00000198015 MRPL42 992319 sc-eQTL 1.45e-01 -0.301 0.205 0.053 CD8_TCM L2
ENSG00000028203 VEZT -757939 sc-eQTL 9.55e-01 0.0118 0.21 0.053 CD8_TEM L2
ENSG00000057704 TMCC3 -190750 sc-eQTL 5.22e-01 -0.116 0.18 0.053 CD8_TEM L2
ENSG00000120798 NR2C1 -613821 sc-eQTL 2.72e-01 -0.236 0.214 0.053 CD8_TEM L2
ENSG00000120833 SOCS2 889993 sc-eQTL 6.69e-01 -0.0825 0.192 0.053 CD8_TEM L2
ENSG00000136040 PLXNC1 311230 sc-eQTL 5.36e-01 -0.126 0.202 0.053 CD8_TEM L2
ENSG00000169372 CRADD 782432 sc-eQTL 7.55e-01 -0.0672 0.215 0.053 CD8_TEM L2
ENSG00000173588 CEP83 -181 sc-eQTL 7.93e-01 -0.0549 0.209 0.053 CD8_TEM L2
ENSG00000184752 NDUFA12 -543941 sc-eQTL 3.13e-01 0.18 0.178 0.053 CD8_TEM L2
ENSG00000198015 MRPL42 992319 sc-eQTL 5.26e-01 0.124 0.195 0.053 CD8_TEM L2
ENSG00000028203 VEZT -757939 sc-eQTL 7.06e-01 -0.0793 0.21 0.051 NK_CD56bright L2
ENSG00000057704 TMCC3 -190750 sc-eQTL 5.51e-01 -0.12 0.201 0.051 NK_CD56bright L2
ENSG00000120798 NR2C1 -613821 sc-eQTL 3.11e-01 -0.22 0.217 0.051 NK_CD56bright L2
ENSG00000120833 SOCS2 889993 sc-eQTL 4.65e-01 -0.133 0.182 0.051 NK_CD56bright L2
ENSG00000136040 PLXNC1 311230 sc-eQTL 3.75e-01 -0.158 0.177 0.051 NK_CD56bright L2
ENSG00000169372 CRADD 782432 sc-eQTL 2.92e-01 0.228 0.216 0.051 NK_CD56bright L2
ENSG00000173588 CEP83 -181 sc-eQTL 2.08e-01 -0.227 0.179 0.051 NK_CD56bright L2
ENSG00000184752 NDUFA12 -543941 sc-eQTL 3.74e-01 -0.153 0.172 0.051 NK_CD56bright L2
ENSG00000198015 MRPL42 992319 sc-eQTL 8.78e-01 -0.0313 0.204 0.051 NK_CD56bright L2
ENSG00000246985 SOCS2-AS1 888039 sc-eQTL 3.81e-01 -0.166 0.189 0.051 NK_CD56bright L2
ENSG00000028203 VEZT -757939 sc-eQTL 1.25e-01 -0.342 0.222 0.053 NK_HLA L2
ENSG00000057704 TMCC3 -190750 sc-eQTL 6.23e-01 -0.0972 0.198 0.053 NK_HLA L2
ENSG00000120798 NR2C1 -613821 sc-eQTL 6.89e-01 -0.0878 0.219 0.053 NK_HLA L2
ENSG00000120833 SOCS2 889993 sc-eQTL 9.53e-02 0.326 0.195 0.053 NK_HLA L2
ENSG00000136040 PLXNC1 311230 sc-eQTL 1.96e-01 0.231 0.178 0.053 NK_HLA L2
ENSG00000169372 CRADD 782432 sc-eQTL 8.21e-01 0.0498 0.219 0.053 NK_HLA L2
ENSG00000173588 CEP83 -181 sc-eQTL 4.08e-01 -0.17 0.205 0.053 NK_HLA L2
ENSG00000184752 NDUFA12 -543941 sc-eQTL 4.49e-02 0.37 0.183 0.053 NK_HLA L2
ENSG00000198015 MRPL42 992319 sc-eQTL 6.18e-01 -0.115 0.229 0.053 NK_HLA L2
ENSG00000246985 SOCS2-AS1 888039 sc-eQTL 5.31e-01 -0.116 0.185 0.053 NK_HLA L2
ENSG00000028203 VEZT -757939 sc-eQTL 6.42e-01 0.0965 0.207 0.05 Pro_T L2
ENSG00000057704 TMCC3 -190750 sc-eQTL 3.06e-01 -0.189 0.184 0.05 Pro_T L2
ENSG00000120798 NR2C1 -613821 sc-eQTL 1.62e-01 -0.3 0.214 0.05 Pro_T L2
ENSG00000120833 SOCS2 889993 sc-eQTL 9.73e-01 -0.0066 0.197 0.05 Pro_T L2
ENSG00000136040 PLXNC1 311230 sc-eQTL 6.81e-01 -0.0864 0.21 0.05 Pro_T L2
ENSG00000169372 CRADD 782432 sc-eQTL 3.96e-01 0.174 0.205 0.05 Pro_T L2
ENSG00000173588 CEP83 -181 sc-eQTL 3.96e-01 -0.177 0.208 0.05 Pro_T L2
ENSG00000184752 NDUFA12 -543941 sc-eQTL 2.36e-01 0.154 0.129 0.05 Pro_T L2
ENSG00000198015 MRPL42 992319 sc-eQTL 7.46e-01 -0.0597 0.184 0.05 Pro_T L2
ENSG00000028203 VEZT -757939 sc-eQTL 9.89e-01 -0.00286 0.2 0.051 cDC L2
ENSG00000057704 TMCC3 -190750 sc-eQTL 8.21e-01 -0.049 0.216 0.051 cDC L2
ENSG00000120798 NR2C1 -613821 sc-eQTL 9.18e-01 -0.0218 0.211 0.051 cDC L2
ENSG00000136040 PLXNC1 311230 sc-eQTL 7.68e-01 -0.0556 0.188 0.051 cDC L2
ENSG00000169372 CRADD 782432 sc-eQTL 8.57e-01 -0.0376 0.208 0.051 cDC L2
ENSG00000173588 CEP83 -181 sc-eQTL 9.43e-01 -0.0127 0.177 0.051 cDC L2
ENSG00000180263 FGD6 -757675 sc-eQTL 4.76e-01 -0.145 0.203 0.051 cDC L2
ENSG00000184752 NDUFA12 -543941 sc-eQTL 1.49e-01 0.249 0.172 0.051 cDC L2
ENSG00000198015 MRPL42 992319 sc-eQTL 7.60e-01 0.0647 0.211 0.051 cDC L2
ENSG00000028203 VEZT -757939 sc-eQTL 5.94e-01 -0.124 0.232 0.064 gdT L2
ENSG00000057704 TMCC3 -190750 sc-eQTL 9.13e-01 -0.0195 0.178 0.064 gdT L2
ENSG00000120798 NR2C1 -613821 sc-eQTL 6.87e-01 0.0952 0.236 0.064 gdT L2
ENSG00000120833 SOCS2 889993 sc-eQTL 4.30e-01 0.169 0.214 0.064 gdT L2
ENSG00000136040 PLXNC1 311230 sc-eQTL 9.15e-01 -0.0239 0.224 0.064 gdT L2
ENSG00000169372 CRADD 782432 sc-eQTL 7.67e-01 -0.0652 0.22 0.064 gdT L2
ENSG00000173588 CEP83 -181 sc-eQTL 3.83e-01 0.191 0.218 0.064 gdT L2
ENSG00000184752 NDUFA12 -543941 sc-eQTL 2.06e-01 0.241 0.189 0.064 gdT L2
ENSG00000198015 MRPL42 992319 sc-eQTL 9.49e-01 0.0143 0.223 0.064 gdT L2
ENSG00000028203 VEZT -757939 sc-eQTL 9.84e-01 0.00407 0.199 0.052 ncMono L2
ENSG00000057704 TMCC3 -190750 sc-eQTL 1.71e-02 -0.456 0.19 0.052 ncMono L2
ENSG00000120798 NR2C1 -613821 sc-eQTL 5.05e-01 -0.139 0.208 0.052 ncMono L2
ENSG00000136040 PLXNC1 311230 sc-eQTL 6.55e-01 0.0593 0.133 0.052 ncMono L2
ENSG00000169372 CRADD 782432 sc-eQTL 8.98e-01 -0.0264 0.207 0.052 ncMono L2
ENSG00000173588 CEP83 -181 sc-eQTL 5.70e-01 -0.118 0.207 0.052 ncMono L2
ENSG00000180263 FGD6 -757675 sc-eQTL 4.39e-01 -0.153 0.197 0.052 ncMono L2
ENSG00000184752 NDUFA12 -543941 sc-eQTL 5.57e-02 0.334 0.174 0.052 ncMono L2
ENSG00000198015 MRPL42 992319 sc-eQTL 4.29e-01 -0.145 0.183 0.052 ncMono L2
ENSG00000028203 VEZT -757939 sc-eQTL 1.08e-01 -0.343 0.212 0.056 pDC L2
ENSG00000057704 TMCC3 -190750 sc-eQTL 6.36e-01 -0.0987 0.208 0.056 pDC L2
ENSG00000120798 NR2C1 -613821 sc-eQTL 1.04e-01 -0.35 0.214 0.056 pDC L2
ENSG00000136040 PLXNC1 311230 sc-eQTL 5.33e-01 0.129 0.207 0.056 pDC L2
ENSG00000169372 CRADD 782432 sc-eQTL 3.44e-01 -0.199 0.209 0.056 pDC L2
ENSG00000173588 CEP83 -181 sc-eQTL 1.42e-01 0.327 0.222 0.056 pDC L2
ENSG00000180263 FGD6 -757675 sc-eQTL 1.49e-01 0.27 0.187 0.056 pDC L2
ENSG00000184752 NDUFA12 -543941 sc-eQTL 2.24e-01 0.225 0.184 0.056 pDC L2
ENSG00000198015 MRPL42 992319 sc-eQTL 8.31e-01 0.0474 0.222 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000028203 VEZT -757939 eQTL 0.0112 0.0791 0.0311 0.00158 0.0 0.0535
ENSG00000136040 PLXNC1 311230 eQTL 0.00206 0.0558 0.0181 0.0 0.0 0.0535
ENSG00000173588 CEP83 -181 eQTL 0.00875 -0.144 0.0547 0.00646 0.00177 0.0535
ENSG00000258365 AC073655.2 176963 eQTL 0.000996 -0.241 0.0731 0.0 0.0 0.0535

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000173588 CEP83 -181 0.000399 0.000452 6.06e-05 0.000121 7.6e-05 0.000153 0.000413 7.33e-05 0.000348 0.000161 0.000428 0.000208 0.000497 0.000185 9.17e-05 0.000259 0.000183 0.000253 0.000101 7.21e-05 0.000191 0.000405 0.000326 0.000104 0.000425 0.000149 0.000205 0.000159 0.000325 0.000198 0.000241 3.09e-05 3.64e-05 6.98e-05 8.93e-05 5.77e-05 3.25e-05 3.18e-05 5.4e-05 2.79e-05 2.19e-05 0.000486 5.76e-05 3.62e-06 5.3e-05 5.19e-05 4.94e-05 2.37e-05 1.75e-05
ENSG00000258365 AC073655.2 176963 1.6e-06 1.3e-06 3e-07 1.02e-06 3.75e-07 5.63e-07 2.24e-06 1.91e-07 1.77e-06 4.78e-07 1.82e-06 7.32e-07 2.46e-06 3.07e-07 4.36e-07 9.97e-07 1.11e-06 1.13e-06 5.34e-07 1.89e-07 6.57e-07 1.6e-06 1.42e-06 4.59e-07 2.37e-06 8.55e-07 9.37e-07 4.71e-07 1.31e-06 1.59e-06 6.04e-07 5.22e-08 4.35e-08 2.29e-07 3.42e-07 1.52e-07 5.7e-08 1.09e-07 1.41e-07 8.59e-09 5.34e-08 1.49e-06 6.21e-08 1.58e-07 1.48e-07 1.2e-07 2.21e-07 8.34e-08 5.69e-08