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Genes within 1Mb (chr12:94128610:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000057704 TMCC3 -521947 sc-eQTL 1.42e-01 0.288 0.196 0.948 DC L1
ENSG00000120798 NR2C1 -945018 sc-eQTL 7.43e-01 0.0621 0.189 0.948 DC L1
ENSG00000136040 PLXNC1 -19967 sc-eQTL 5.68e-01 0.101 0.176 0.948 DC L1
ENSG00000169372 CRADD 451235 sc-eQTL 5.96e-01 -0.105 0.199 0.948 DC L1
ENSG00000173588 CEP83 -331378 sc-eQTL 1.16e-01 -0.246 0.156 0.948 DC L1
ENSG00000173598 NUDT4 750727 sc-eQTL 7.10e-01 -0.0609 0.163 0.948 DC L1
ENSG00000177889 UBE2N 686663 sc-eQTL 6.71e-01 0.0703 0.165 0.948 DC L1
ENSG00000184752 NDUFA12 -875138 sc-eQTL 3.22e-01 -0.146 0.147 0.948 DC L1
ENSG00000198015 MRPL42 661122 sc-eQTL 7.14e-01 0.0696 0.19 0.948 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000057704 TMCC3 -521947 sc-eQTL 4.06e-01 0.153 0.183 0.949 B_Activated L2
ENSG00000120798 NR2C1 -945018 sc-eQTL 6.17e-01 0.108 0.215 0.949 B_Activated L2
ENSG00000136040 PLXNC1 -19967 sc-eQTL 9.18e-01 0.0179 0.174 0.949 B_Activated L2
ENSG00000169372 CRADD 451235 sc-eQTL 2.83e-01 0.219 0.203 0.949 B_Activated L2
ENSG00000173588 CEP83 -331378 sc-eQTL 4.27e-01 0.172 0.216 0.949 B_Activated L2
ENSG00000173598 NUDT4 750727 sc-eQTL 7.34e-01 0.0616 0.181 0.949 B_Activated L2
ENSG00000177889 UBE2N 686663 sc-eQTL 6.33e-01 -0.108 0.225 0.949 B_Activated L2
ENSG00000184752 NDUFA12 -875138 sc-eQTL 2.14e-01 0.237 0.19 0.949 B_Activated L2
ENSG00000198015 MRPL42 661122 sc-eQTL 1.78e-01 0.294 0.217 0.949 B_Activated L2
ENSG00000120798 NR2C1 -945018 sc-eQTL 1.03e-01 -0.341 0.208 0.95 CD4_CTL L2
ENSG00000120833 SOCS2 558796 sc-eQTL 2.74e-01 -0.214 0.196 0.95 CD4_CTL L2
ENSG00000136040 PLXNC1 -19967 sc-eQTL 2.08e-01 -0.235 0.186 0.95 CD4_CTL L2
ENSG00000169372 CRADD 451235 sc-eQTL 6.83e-01 0.0775 0.19 0.95 CD4_CTL L2
ENSG00000173588 CEP83 -331378 sc-eQTL 2.26e-01 -0.231 0.19 0.95 CD4_CTL L2
ENSG00000173598 NUDT4 750727 sc-eQTL 1.30e-01 0.281 0.185 0.95 CD4_CTL L2
ENSG00000177889 UBE2N 686663 sc-eQTL 4.59e-01 -0.14 0.189 0.95 CD4_CTL L2
ENSG00000184752 NDUFA12 -875138 sc-eQTL 9.57e-01 -0.00939 0.172 0.95 CD4_CTL L2
ENSG00000198015 MRPL42 661122 sc-eQTL 6.73e-01 -0.0895 0.212 0.95 CD4_CTL L2
ENSG00000057704 TMCC3 -521947 sc-eQTL 7.13e-01 0.0636 0.172 0.95 CD8_TEM L2
ENSG00000120798 NR2C1 -945018 sc-eQTL 2.34e-01 0.244 0.204 0.95 CD8_TEM L2
ENSG00000120833 SOCS2 558796 sc-eQTL 5.87e-01 -0.1 0.184 0.95 CD8_TEM L2
ENSG00000136040 PLXNC1 -19967 sc-eQTL 9.13e-01 0.0211 0.194 0.95 CD8_TEM L2
ENSG00000169372 CRADD 451235 sc-eQTL 5.93e-01 0.11 0.205 0.95 CD8_TEM L2
ENSG00000173588 CEP83 -331378 sc-eQTL 4.52e-01 0.15 0.2 0.95 CD8_TEM L2
ENSG00000173598 NUDT4 750727 sc-eQTL 7.55e-01 0.059 0.189 0.95 CD8_TEM L2
ENSG00000177889 UBE2N 686663 sc-eQTL 8.13e-01 -0.0428 0.18 0.95 CD8_TEM L2
ENSG00000184752 NDUFA12 -875138 sc-eQTL 2.64e-01 -0.191 0.17 0.95 CD8_TEM L2
ENSG00000198015 MRPL42 661122 sc-eQTL 9.60e-01 0.00941 0.187 0.95 CD8_TEM L2
ENSG00000057704 TMCC3 -521947 sc-eQTL 4.67e-01 0.14 0.192 0.949 NK_CD56bright L2
ENSG00000120798 NR2C1 -945018 sc-eQTL 3.18e-01 -0.208 0.207 0.949 NK_CD56bright L2
ENSG00000120833 SOCS2 558796 sc-eQTL 4.68e-01 -0.127 0.174 0.949 NK_CD56bright L2
ENSG00000136040 PLXNC1 -19967 sc-eQTL 1.80e-01 -0.228 0.169 0.949 NK_CD56bright L2
ENSG00000169372 CRADD 451235 sc-eQTL 8.83e-03 -0.538 0.203 0.949 NK_CD56bright L2
ENSG00000173588 CEP83 -331378 sc-eQTL 7.55e-01 0.0539 0.172 0.949 NK_CD56bright L2
ENSG00000173598 NUDT4 750727 sc-eQTL 9.81e-01 0.00436 0.184 0.949 NK_CD56bright L2
ENSG00000177889 UBE2N 686663 sc-eQTL 6.59e-02 -0.359 0.194 0.949 NK_CD56bright L2
ENSG00000184752 NDUFA12 -875138 sc-eQTL 1.67e-01 0.228 0.164 0.949 NK_CD56bright L2
ENSG00000198015 MRPL42 661122 sc-eQTL 5.68e-01 -0.111 0.195 0.949 NK_CD56bright L2
ENSG00000246985 SOCS2-AS1 556842 sc-eQTL 1.95e-01 -0.235 0.181 0.949 NK_CD56bright L2
ENSG00000057704 TMCC3 -521947 sc-eQTL 7.99e-01 -0.0492 0.193 0.947 NK_HLA L2
ENSG00000120798 NR2C1 -945018 sc-eQTL 4.78e-01 0.152 0.214 0.947 NK_HLA L2
ENSG00000120833 SOCS2 558796 sc-eQTL 2.22e-01 0.234 0.191 0.947 NK_HLA L2
ENSG00000136040 PLXNC1 -19967 sc-eQTL 5.53e-01 -0.104 0.175 0.947 NK_HLA L2
ENSG00000169372 CRADD 451235 sc-eQTL 2.88e-01 0.228 0.214 0.947 NK_HLA L2
ENSG00000173588 CEP83 -331378 sc-eQTL 2.94e-01 -0.211 0.2 0.947 NK_HLA L2
ENSG00000173598 NUDT4 750727 sc-eQTL 7.96e-01 0.0464 0.179 0.947 NK_HLA L2
ENSG00000177889 UBE2N 686663 sc-eQTL 5.36e-02 0.386 0.199 0.947 NK_HLA L2
ENSG00000184752 NDUFA12 -875138 sc-eQTL 4.66e-01 -0.132 0.181 0.947 NK_HLA L2
ENSG00000198015 MRPL42 661122 sc-eQTL 4.97e-01 -0.152 0.224 0.947 NK_HLA L2
ENSG00000246985 SOCS2-AS1 556842 sc-eQTL 8.06e-01 0.0446 0.181 0.947 NK_HLA L2
ENSG00000057704 TMCC3 -521947 sc-eQTL 6.87e-01 0.069 0.171 0.95 Pro_T L2
ENSG00000120798 NR2C1 -945018 sc-eQTL 7.75e-01 -0.0568 0.198 0.95 Pro_T L2
ENSG00000120833 SOCS2 558796 sc-eQTL 3.05e-01 0.187 0.182 0.95 Pro_T L2
ENSG00000136040 PLXNC1 -19967 sc-eQTL 5.32e-01 0.121 0.194 0.95 Pro_T L2
ENSG00000169372 CRADD 451235 sc-eQTL 9.37e-01 -0.0151 0.19 0.95 Pro_T L2
ENSG00000173588 CEP83 -331378 sc-eQTL 9.28e-01 -0.0174 0.192 0.95 Pro_T L2
ENSG00000173598 NUDT4 750727 sc-eQTL 7.85e-01 -0.0419 0.154 0.95 Pro_T L2
ENSG00000177889 UBE2N 686663 sc-eQTL 5.47e-01 -0.0856 0.142 0.95 Pro_T L2
ENSG00000184752 NDUFA12 -875138 sc-eQTL 1.32e-01 0.181 0.12 0.95 Pro_T L2
ENSG00000198015 MRPL42 661122 sc-eQTL 9.46e-01 -0.0116 0.17 0.95 Pro_T L2
ENSG00000057704 TMCC3 -521947 sc-eQTL 4.86e-02 0.395 0.199 0.944 cDC L2
ENSG00000120798 NR2C1 -945018 sc-eQTL 8.47e-01 0.0381 0.197 0.944 cDC L2
ENSG00000136040 PLXNC1 -19967 sc-eQTL 2.95e-01 0.184 0.175 0.944 cDC L2
ENSG00000169372 CRADD 451235 sc-eQTL 6.60e-01 -0.0855 0.194 0.944 cDC L2
ENSG00000173588 CEP83 -331378 sc-eQTL 3.74e-01 -0.146 0.164 0.944 cDC L2
ENSG00000173598 NUDT4 750727 sc-eQTL 5.63e-01 -0.114 0.197 0.944 cDC L2
ENSG00000177889 UBE2N 686663 sc-eQTL 5.19e-01 0.111 0.171 0.944 cDC L2
ENSG00000184752 NDUFA12 -875138 sc-eQTL 4.56e-01 -0.12 0.161 0.944 cDC L2
ENSG00000198015 MRPL42 661122 sc-eQTL 3.59e-01 0.18 0.196 0.944 cDC L2
ENSG00000057704 TMCC3 -521947 sc-eQTL 7.89e-01 -0.0499 0.186 0.945 gdT L2
ENSG00000120798 NR2C1 -945018 sc-eQTL 9.08e-01 0.0285 0.247 0.945 gdT L2
ENSG00000120833 SOCS2 558796 sc-eQTL 4.04e-01 0.187 0.223 0.945 gdT L2
ENSG00000136040 PLXNC1 -19967 sc-eQTL 5.28e-01 0.148 0.234 0.945 gdT L2
ENSG00000169372 CRADD 451235 sc-eQTL 7.22e-01 0.0819 0.229 0.945 gdT L2
ENSG00000173588 CEP83 -331378 sc-eQTL 1.02e-01 -0.373 0.227 0.945 gdT L2
ENSG00000173598 NUDT4 750727 sc-eQTL 1.47e-01 -0.316 0.217 0.945 gdT L2
ENSG00000177889 UBE2N 686663 sc-eQTL 1.07e-02 -0.604 0.233 0.945 gdT L2
ENSG00000184752 NDUFA12 -875138 sc-eQTL 7.72e-01 0.0576 0.199 0.945 gdT L2
ENSG00000198015 MRPL42 661122 sc-eQTL 8.40e-01 -0.0472 0.233 0.945 gdT L2
ENSG00000057704 TMCC3 -521947 sc-eQTL 6.07e-01 -0.103 0.199 0.949 intMono L2
ENSG00000120798 NR2C1 -945018 sc-eQTL 9.60e-01 0.00988 0.195 0.949 intMono L2
ENSG00000136040 PLXNC1 -19967 sc-eQTL 4.21e-01 0.135 0.168 0.949 intMono L2
ENSG00000169372 CRADD 451235 sc-eQTL 7.54e-01 -0.0606 0.193 0.949 intMono L2
ENSG00000173588 CEP83 -331378 sc-eQTL 5.28e-02 -0.39 0.2 0.949 intMono L2
ENSG00000173598 NUDT4 750727 sc-eQTL 2.59e-01 -0.199 0.176 0.949 intMono L2
ENSG00000177889 UBE2N 686663 sc-eQTL 6.12e-02 -0.313 0.166 0.949 intMono L2
ENSG00000184752 NDUFA12 -875138 sc-eQTL 1.61e-01 -0.182 0.129 0.949 intMono L2
ENSG00000198015 MRPL42 661122 sc-eQTL 7.04e-01 -0.0687 0.181 0.949 intMono L2
ENSG00000057704 TMCC3 -521947 sc-eQTL 9.29e-01 -0.0164 0.183 0.948 ncMono L2
ENSG00000120798 NR2C1 -945018 sc-eQTL 8.72e-02 -0.337 0.196 0.948 ncMono L2
ENSG00000136040 PLXNC1 -19967 sc-eQTL 4.48e-01 -0.0956 0.126 0.948 ncMono L2
ENSG00000169372 CRADD 451235 sc-eQTL 6.87e-01 -0.0792 0.196 0.948 ncMono L2
ENSG00000173588 CEP83 -331378 sc-eQTL 2.09e-01 -0.247 0.196 0.948 ncMono L2
ENSG00000173598 NUDT4 750727 sc-eQTL 6.69e-01 0.0736 0.172 0.948 ncMono L2
ENSG00000177889 UBE2N 686663 sc-eQTL 1.48e-01 0.242 0.167 0.948 ncMono L2
ENSG00000184752 NDUFA12 -875138 sc-eQTL 7.44e-01 -0.0543 0.166 0.948 ncMono L2
ENSG00000198015 MRPL42 661122 sc-eQTL 2.35e-01 0.207 0.174 0.948 ncMono L2
ENSG00000057704 TMCC3 -521947 sc-eQTL 4.66e-01 -0.149 0.204 0.949 pDC L2
ENSG00000120798 NR2C1 -945018 sc-eQTL 5.02e-01 -0.142 0.211 0.949 pDC L2
ENSG00000136040 PLXNC1 -19967 sc-eQTL 5.90e-01 -0.11 0.203 0.949 pDC L2
ENSG00000169372 CRADD 451235 sc-eQTL 2.74e-01 -0.224 0.205 0.949 pDC L2
ENSG00000173588 CEP83 -331378 sc-eQTL 2.44e-01 -0.254 0.217 0.949 pDC L2
ENSG00000173598 NUDT4 750727 sc-eQTL 5.06e-01 0.118 0.176 0.949 pDC L2
ENSG00000177889 UBE2N 686663 sc-eQTL 8.82e-01 0.031 0.209 0.949 pDC L2
ENSG00000184752 NDUFA12 -875138 sc-eQTL 8.29e-01 -0.0393 0.181 0.949 pDC L2
ENSG00000198015 MRPL42 661122 sc-eQTL 1.74e-01 -0.294 0.215 0.949 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000278916 CEP83-DT -331393 eQTL 0.011 0.225 0.0885 0.00161 0.0 0.0417

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000186076 \N 487024 2.8e-07 1.5e-07 5.64e-08 2.41e-07 1.03e-07 8.45e-08 1.99e-07 5.68e-08 1.47e-07 6.75e-08 1.66e-07 1.05e-07 2.05e-07 7.95e-08 5.82e-08 7.5e-08 4.45e-08 1.64e-07 7.16e-08 5.48e-08 1.27e-07 1.26e-07 1.58e-07 3.22e-08 1.98e-07 1.22e-07 1.17e-07 1.04e-07 1.31e-07 1.05e-07 1.09e-07 5.22e-08 3.29e-08 9.58e-08 4.78e-08 2.85e-08 6.29e-08 8.51e-08 5.27e-08 7.9e-08 5.81e-08 1.59e-07 5.08e-08 1.05e-08 3.66e-08 1.89e-08 1e-07 2.13e-09 4.72e-08