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Genes within 1Mb (chr12:93990783:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000057704 TMCC3 -659774 sc-eQTL 1.58e-01 0.266 0.188 0.05 CD8_TEM L2
ENSG00000120833 SOCS2 420969 sc-eQTL 9.77e-01 0.00584 0.201 0.05 CD8_TEM L2
ENSG00000136040 PLXNC1 -157794 sc-eQTL 6.18e-01 0.106 0.212 0.05 CD8_TEM L2
ENSG00000169372 CRADD 313408 sc-eQTL 2.91e-01 0.237 0.224 0.05 CD8_TEM L2
ENSG00000173588 CEP83 -469205 sc-eQTL 9.27e-01 -0.02 0.218 0.05 CD8_TEM L2
ENSG00000173598 NUDT4 612900 sc-eQTL 2.40e-01 0.243 0.206 0.05 CD8_TEM L2
ENSG00000177889 UBE2N 548836 sc-eQTL 9.29e-01 0.0176 0.197 0.05 CD8_TEM L2
ENSG00000198015 MRPL42 523295 sc-eQTL 7.42e-01 0.0674 0.204 0.05 CD8_TEM L2
ENSG00000057704 TMCC3 -659774 sc-eQTL 5.41e-01 0.129 0.212 0.052 gdT L2
ENSG00000120833 SOCS2 420969 sc-eQTL 5.08e-01 -0.169 0.255 0.052 gdT L2
ENSG00000136040 PLXNC1 -157794 sc-eQTL 6.03e-01 -0.139 0.267 0.052 gdT L2
ENSG00000169372 CRADD 313408 sc-eQTL 5.87e-01 0.143 0.262 0.052 gdT L2
ENSG00000173588 CEP83 -469205 sc-eQTL 5.83e-01 0.143 0.261 0.052 gdT L2
ENSG00000173598 NUDT4 612900 sc-eQTL 5.58e-01 0.146 0.249 0.052 gdT L2
ENSG00000177889 UBE2N 548836 sc-eQTL 6.47e-01 -0.125 0.272 0.052 gdT L2
ENSG00000198015 MRPL42 523295 sc-eQTL 6.49e-02 0.488 0.262 0.052 gdT L2
ENSG00000057704 TMCC3 -659774 sc-eQTL 1.26e-01 -0.335 0.218 0.051 pDC L2
ENSG00000136040 PLXNC1 -157794 sc-eQTL 5.36e-01 -0.135 0.218 0.051 pDC L2
ENSG00000169372 CRADD 313408 sc-eQTL 3.01e-01 0.229 0.22 0.051 pDC L2
ENSG00000173588 CEP83 -469205 sc-eQTL 2.46e-01 0.272 0.234 0.051 pDC L2
ENSG00000173598 NUDT4 612900 sc-eQTL 6.11e-01 -0.0969 0.19 0.051 pDC L2
ENSG00000177889 UBE2N 548836 sc-eQTL 2.77e-01 -0.245 0.224 0.051 pDC L2
ENSG00000198015 MRPL42 523295 sc-eQTL 4.73e-01 -0.167 0.233 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000257345 LINC02413 991565 eQTL 0.00328 0.235 0.0796 0.00503 0.00219 0.0599
ENSG00000258357 AC023161.2 -531086 eQTL 0.0484 0.132 0.0667 0.0 0.0 0.0599
ENSG00000278916 CEP83-DT -469220 eQTL 0.00112 0.241 0.0737 0.00414 0.0022 0.0599

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina