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Genes within 1Mb (chr12:93838665:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000057704 TMCC3 -811892 sc-eQTL 8.38e-01 0.0437 0.214 0.052 DC L1
ENSG00000102189 EEA1 909334 sc-eQTL 9.29e-02 -0.297 0.176 0.052 DC L1
ENSG00000136040 PLXNC1 -309912 sc-eQTL 3.71e-01 0.171 0.191 0.052 DC L1
ENSG00000169372 CRADD 161290 sc-eQTL 4.84e-01 0.151 0.216 0.052 DC L1
ENSG00000173588 CEP83 -621323 sc-eQTL 5.18e-01 -0.11 0.17 0.052 DC L1
ENSG00000173598 NUDT4 460782 sc-eQTL 2.18e-01 -0.218 0.177 0.052 DC L1
ENSG00000177889 UBE2N 396718 sc-eQTL 8.34e-01 0.0375 0.179 0.052 DC L1
ENSG00000198015 MRPL42 371177 sc-eQTL 8.07e-01 0.0503 0.206 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000057704 TMCC3 -811892 sc-eQTL 2.67e-01 0.184 0.165 0.051 CD8_TCM L2
ENSG00000102189 EEA1 909334 sc-eQTL 1.30e-01 0.325 0.214 0.051 CD8_TCM L2
ENSG00000120833 SOCS2 268851 sc-eQTL 7.79e-01 0.0519 0.184 0.051 CD8_TCM L2
ENSG00000136040 PLXNC1 -309912 sc-eQTL 9.63e-01 -0.00973 0.207 0.051 CD8_TCM L2
ENSG00000169372 CRADD 161290 sc-eQTL 3.77e-01 0.193 0.219 0.051 CD8_TCM L2
ENSG00000173588 CEP83 -621323 sc-eQTL 2.02e-01 0.271 0.212 0.051 CD8_TCM L2
ENSG00000173598 NUDT4 460782 sc-eQTL 6.80e-02 -0.317 0.173 0.051 CD8_TCM L2
ENSG00000177889 UBE2N 396718 sc-eQTL 8.83e-01 -0.0305 0.207 0.051 CD8_TCM L2
ENSG00000198015 MRPL42 371177 sc-eQTL 7.41e-01 0.0701 0.212 0.051 CD8_TCM L2
ENSG00000057704 TMCC3 -811892 sc-eQTL 9.76e-01 0.00576 0.187 0.05 CD8_TEM L2
ENSG00000102189 EEA1 909334 sc-eQTL 6.00e-02 -0.403 0.213 0.05 CD8_TEM L2
ENSG00000120833 SOCS2 268851 sc-eQTL 8.25e-01 0.0444 0.2 0.05 CD8_TEM L2
ENSG00000136040 PLXNC1 -309912 sc-eQTL 6.16e-01 -0.106 0.21 0.05 CD8_TEM L2
ENSG00000169372 CRADD 161290 sc-eQTL 4.42e-01 0.172 0.223 0.05 CD8_TEM L2
ENSG00000173588 CEP83 -621323 sc-eQTL 3.18e-01 -0.217 0.217 0.05 CD8_TEM L2
ENSG00000173598 NUDT4 460782 sc-eQTL 4.37e-01 0.16 0.205 0.05 CD8_TEM L2
ENSG00000177889 UBE2N 396718 sc-eQTL 1.73e-01 -0.267 0.195 0.05 CD8_TEM L2
ENSG00000198015 MRPL42 371177 sc-eQTL 9.00e-01 -0.0256 0.203 0.05 CD8_TEM L2
ENSG00000057704 TMCC3 -811892 sc-eQTL 3.81e-01 -0.157 0.179 0.05 Pro_T L2
ENSG00000102189 EEA1 909334 sc-eQTL 3.30e-01 0.204 0.209 0.05 Pro_T L2
ENSG00000120833 SOCS2 268851 sc-eQTL 1.17e-01 -0.3 0.191 0.05 Pro_T L2
ENSG00000136040 PLXNC1 -309912 sc-eQTL 9.78e-01 -0.00557 0.204 0.05 Pro_T L2
ENSG00000169372 CRADD 161290 sc-eQTL 4.14e-01 -0.163 0.199 0.05 Pro_T L2
ENSG00000173588 CEP83 -621323 sc-eQTL 4.37e-01 -0.157 0.202 0.05 Pro_T L2
ENSG00000173598 NUDT4 460782 sc-eQTL 1.33e-01 -0.243 0.161 0.05 Pro_T L2
ENSG00000177889 UBE2N 396718 sc-eQTL 2.12e-01 -0.186 0.148 0.05 Pro_T L2
ENSG00000198015 MRPL42 371177 sc-eQTL 5.83e-01 0.0984 0.179 0.05 Pro_T L2
ENSG00000057704 TMCC3 -811892 sc-eQTL 2.80e-01 0.197 0.182 0.058 gdT L2
ENSG00000102189 EEA1 909334 sc-eQTL 1.31e-01 -0.358 0.235 0.058 gdT L2
ENSG00000120833 SOCS2 268851 sc-eQTL 9.78e-01 0.00598 0.22 0.058 gdT L2
ENSG00000136040 PLXNC1 -309912 sc-eQTL 1.94e-01 -0.298 0.229 0.058 gdT L2
ENSG00000169372 CRADD 161290 sc-eQTL 1.36e-02 -0.551 0.221 0.058 gdT L2
ENSG00000173588 CEP83 -621323 sc-eQTL 4.60e-02 -0.446 0.221 0.058 gdT L2
ENSG00000173598 NUDT4 460782 sc-eQTL 7.21e-01 -0.0768 0.214 0.058 gdT L2
ENSG00000177889 UBE2N 396718 sc-eQTL 4.08e-01 -0.194 0.234 0.058 gdT L2
ENSG00000198015 MRPL42 371177 sc-eQTL 9.16e-02 0.385 0.226 0.058 gdT L2
ENSG00000057704 TMCC3 -811892 sc-eQTL 9.00e-01 0.0287 0.227 0.051 pDC L2
ENSG00000102189 EEA1 909334 sc-eQTL 6.96e-01 -0.0917 0.234 0.051 pDC L2
ENSG00000136040 PLXNC1 -309912 sc-eQTL 1.90e-01 0.296 0.225 0.051 pDC L2
ENSG00000169372 CRADD 161290 sc-eQTL 5.54e-01 0.136 0.228 0.051 pDC L2
ENSG00000173588 CEP83 -621323 sc-eQTL 1.91e-01 -0.318 0.242 0.051 pDC L2
ENSG00000173598 NUDT4 460782 sc-eQTL 3.37e-02 -0.415 0.194 0.051 pDC L2
ENSG00000177889 UBE2N 396718 sc-eQTL 6.50e-01 -0.106 0.233 0.051 pDC L2
ENSG00000198015 MRPL42 371177 sc-eQTL 6.55e-01 -0.108 0.241 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000186076 AC012085.1 197079 eQTL 4.64e-02 0.169 0.0849 0.0 0.0 0.0427
ENSG00000257345 LINC02413 839447 eQTL 0.0733 0.164 0.0917 0.00106 0.0 0.0427

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000278916 \N -621338 3.1e-07 1.53e-07 5.72e-08 2.09e-07 1.03e-07 8.45e-08 1.9e-07 5.85e-08 1.54e-07 7.6e-08 1.63e-07 1.22e-07 2.13e-07 8.13e-08 5.36e-08 8.71e-08 4.31e-08 1.64e-07 7.18e-08 5.33e-08 1.27e-07 1.42e-07 1.58e-07 3.22e-08 2.02e-07 1.26e-07 1.17e-07 1.12e-07 1.31e-07 1.06e-07 1.14e-07 3.59e-08 3.59e-08 9.76e-08 3.4e-08 2.74e-08 5.42e-08 8.61e-08 6.76e-08 3.99e-08 5.24e-08 1.59e-07 5.12e-08 7.35e-09 2.82e-08 1.8e-08 1.2e-07 1.92e-09 4.81e-08