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Genes within 1Mb (chr12:93560003:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000102189 EEA1 630672 sc-eQTL 6.29e-01 -0.0843 0.174 0.052 DC L1
ENSG00000136040 PLXNC1 -588574 sc-eQTL 4.87e-01 -0.131 0.188 0.052 DC L1
ENSG00000169372 CRADD -117372 sc-eQTL 2.56e-01 0.242 0.212 0.052 DC L1
ENSG00000173588 CEP83 -899985 sc-eQTL 2.14e-01 -0.209 0.167 0.052 DC L1
ENSG00000173598 NUDT4 182120 sc-eQTL 9.68e-01 0.00702 0.175 0.052 DC L1
ENSG00000177889 UBE2N 118056 sc-eQTL 4.01e-02 -0.361 0.175 0.052 DC L1
ENSG00000198015 MRPL42 92515 sc-eQTL 7.82e-01 0.0564 0.203 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000102189 EEA1 630672 sc-eQTL 7.33e-01 -0.0706 0.207 0.052 CD4_CTL L2
ENSG00000120833 SOCS2 -9811 sc-eQTL 8.25e-01 -0.0462 0.208 0.052 CD4_CTL L2
ENSG00000136040 PLXNC1 -588574 sc-eQTL 9.18e-01 -0.0204 0.198 0.052 CD4_CTL L2
ENSG00000169372 CRADD -117372 sc-eQTL 1.86e-01 0.266 0.201 0.052 CD4_CTL L2
ENSG00000173588 CEP83 -899985 sc-eQTL 6.57e-01 0.0901 0.203 0.052 CD4_CTL L2
ENSG00000173598 NUDT4 182120 sc-eQTL 3.77e-01 0.174 0.197 0.052 CD4_CTL L2
ENSG00000177889 UBE2N 118056 sc-eQTL 4.95e-01 0.137 0.201 0.052 CD4_CTL L2
ENSG00000198015 MRPL42 92515 sc-eQTL 1.43e-02 -0.547 0.222 0.052 CD4_CTL L2
ENSG00000102189 EEA1 630672 sc-eQTL 6.30e-01 -0.101 0.209 0.051 CD8_TCM L2
ENSG00000120833 SOCS2 -9811 sc-eQTL 5.13e-01 0.118 0.18 0.051 CD8_TCM L2
ENSG00000136040 PLXNC1 -588574 sc-eQTL 6.51e-01 -0.0917 0.202 0.051 CD8_TCM L2
ENSG00000169372 CRADD -117372 sc-eQTL 1.73e-01 -0.291 0.213 0.051 CD8_TCM L2
ENSG00000173588 CEP83 -899985 sc-eQTL 4.75e-01 0.148 0.207 0.051 CD8_TCM L2
ENSG00000173598 NUDT4 182120 sc-eQTL 6.31e-01 0.0815 0.17 0.051 CD8_TCM L2
ENSG00000177889 UBE2N 118056 sc-eQTL 6.54e-01 -0.0906 0.202 0.051 CD8_TCM L2
ENSG00000198015 MRPL42 92515 sc-eQTL 1.32e-01 -0.311 0.206 0.051 CD8_TCM L2
ENSG00000102189 EEA1 630672 sc-eQTL 4.94e-01 -0.141 0.205 0.05 NK_HLA L2
ENSG00000120833 SOCS2 -9811 sc-eQTL 5.27e-01 -0.128 0.203 0.05 NK_HLA L2
ENSG00000136040 PLXNC1 -588574 sc-eQTL 6.70e-01 -0.0793 0.185 0.05 NK_HLA L2
ENSG00000169372 CRADD -117372 sc-eQTL 3.09e-01 0.231 0.227 0.05 NK_HLA L2
ENSG00000173588 CEP83 -899985 sc-eQTL 9.73e-01 0.00723 0.213 0.05 NK_HLA L2
ENSG00000173598 NUDT4 182120 sc-eQTL 6.34e-01 -0.0904 0.19 0.05 NK_HLA L2
ENSG00000177889 UBE2N 118056 sc-eQTL 7.27e-01 0.0743 0.213 0.05 NK_HLA L2
ENSG00000198015 MRPL42 92515 sc-eQTL 7.58e-01 0.0731 0.237 0.05 NK_HLA L2
ENSG00000246985 SOCS2-AS1 -11765 sc-eQTL 6.60e-01 -0.0845 0.192 0.05 NK_HLA L2
ENSG00000102189 EEA1 630672 sc-eQTL 5.06e-01 -0.167 0.25 0.058 gdT L2
ENSG00000120833 SOCS2 -9811 sc-eQTL 7.87e-01 0.0629 0.232 0.058 gdT L2
ENSG00000136040 PLXNC1 -588574 sc-eQTL 5.42e-01 0.149 0.243 0.058 gdT L2
ENSG00000169372 CRADD -117372 sc-eQTL 1.83e-01 0.317 0.237 0.058 gdT L2
ENSG00000173588 CEP83 -899985 sc-eQTL 4.43e-02 -0.475 0.234 0.058 gdT L2
ENSG00000173598 NUDT4 182120 sc-eQTL 2.51e-01 0.26 0.226 0.058 gdT L2
ENSG00000177889 UBE2N 118056 sc-eQTL 4.41e-01 -0.191 0.248 0.058 gdT L2
ENSG00000198015 MRPL42 92515 sc-eQTL 8.53e-01 -0.045 0.242 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000177889 \N 118056 5.46e-06 5.78e-06 6.91e-07 3.15e-06 1.59e-06 1.53e-06 5.49e-06 1.09e-06 5.03e-06 2.46e-06 6.15e-06 2.9e-06 7.37e-06 1.79e-06 1.35e-06 3.69e-06 1.99e-06 3.81e-06 1.47e-06 1.37e-06 2.88e-06 4.98e-06 4.61e-06 1.36e-06 7.74e-06 1.87e-06 2.35e-06 1.74e-06 4.24e-06 4.43e-06 2.62e-06 4.17e-07 7.34e-07 1.73e-06 2.13e-06 9.86e-07 1e-06 4.24e-07 1.05e-06 4.27e-07 4.26e-07 6.25e-06 8.46e-07 1.74e-07 5.95e-07 1.1e-06 7.44e-07 5.2e-07 3.35e-07
ENSG00000187510 \N 857160 2.64e-07 1.1e-07 3.88e-08 1.8e-07 8.92e-08 9.71e-08 1.41e-07 5.49e-08 1.41e-07 4.38e-08 1.62e-07 7.88e-08 1.26e-07 6.21e-08 5.55e-08 7.26e-08 4.94e-08 1.14e-07 5.19e-08 4.07e-08 1.04e-07 1.28e-07 1.3e-07 4.54e-08 1.31e-07 1.19e-07 1.11e-07 9.15e-08 9.88e-08 1.09e-07 9.58e-08 2.99e-08 3.35e-08 8.65e-08 8.82e-08 3.76e-08 5.02e-08 9.23e-08 6.55e-08 3.76e-08 5.13e-08 1.37e-07 5.24e-08 1.52e-08 4.7e-08 1.83e-08 1.25e-07 3.8e-09 5.04e-08