logo

Genes within 1Mb (chr12:113610545:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089060 SLC8B1 251052 sc-eQTL 1.99e-02 -0.424 0.181 0.05 CD4_CTL L2
ENSG00000089127 OAS1 703762 sc-eQTL 1.72e-01 0.223 0.163 0.05 CD4_CTL L2
ENSG00000111331 OAS3 672101 sc-eQTL 7.01e-01 -0.0708 0.184 0.05 CD4_CTL L2
ENSG00000111335 OAS2 632150 sc-eQTL 5.24e-01 0.115 0.18 0.05 CD4_CTL L2
ENSG00000122965 RBM19 -355780 sc-eQTL 6.19e-01 -0.0939 0.189 0.05 CD4_CTL L2
ENSG00000123064 DDX54 425066 sc-eQTL 8.86e-01 0.0265 0.185 0.05 CD4_CTL L2
ENSG00000135144 DTX1 553836 sc-eQTL 8.41e-01 -0.0266 0.133 0.05 CD4_CTL L2
ENSG00000139405 RITA1 425019 sc-eQTL 2.89e-01 0.195 0.184 0.05 CD4_CTL L2
ENSG00000151176 PLBD2 251979 sc-eQTL 8.46e-01 0.0367 0.189 0.05 CD4_CTL L2
ENSG00000186815 TPCN1 389495 sc-eQTL 3.69e-01 -0.156 0.173 0.05 CD4_CTL L2
ENSG00000089060 SLC8B1 251052 sc-eQTL 8.20e-01 0.0425 0.187 0.051 CD8_TCM L2
ENSG00000089127 OAS1 703762 sc-eQTL 9.17e-01 0.0171 0.163 0.051 CD8_TCM L2
ENSG00000111331 OAS3 672101 sc-eQTL 9.26e-01 0.018 0.193 0.051 CD8_TCM L2
ENSG00000111335 OAS2 632150 sc-eQTL 9.57e-01 -0.00858 0.158 0.051 CD8_TCM L2
ENSG00000122965 RBM19 -355780 sc-eQTL 3.79e-03 -0.524 0.179 0.051 CD8_TCM L2
ENSG00000123064 DDX54 425066 sc-eQTL 5.13e-01 0.135 0.205 0.051 CD8_TCM L2
ENSG00000139405 RITA1 425019 sc-eQTL 4.98e-01 0.132 0.194 0.051 CD8_TCM L2
ENSG00000151176 PLBD2 251979 sc-eQTL 7.27e-01 -0.0693 0.198 0.051 CD8_TCM L2
ENSG00000186815 TPCN1 389495 sc-eQTL 5.37e-02 -0.374 0.192 0.051 CD8_TCM L2
ENSG00000089060 SLC8B1 251052 sc-eQTL 7.11e-02 -0.342 0.188 0.05 Pro_T L2
ENSG00000089127 OAS1 703762 sc-eQTL 5.10e-01 0.076 0.115 0.05 Pro_T L2
ENSG00000111331 OAS3 672101 sc-eQTL 6.18e-01 0.081 0.162 0.05 Pro_T L2
ENSG00000111335 OAS2 632150 sc-eQTL 9.99e-01 0.000101 0.138 0.05 Pro_T L2
ENSG00000122965 RBM19 -355780 sc-eQTL 5.11e-01 0.119 0.182 0.05 Pro_T L2
ENSG00000123064 DDX54 425066 sc-eQTL 8.17e-01 -0.0377 0.163 0.05 Pro_T L2
ENSG00000135144 DTX1 553836 sc-eQTL 4.25e-01 -0.115 0.145 0.05 Pro_T L2
ENSG00000139405 RITA1 425019 sc-eQTL 9.30e-01 -0.0151 0.171 0.05 Pro_T L2
ENSG00000151176 PLBD2 251979 sc-eQTL 1.90e-01 -0.246 0.187 0.05 Pro_T L2
ENSG00000186815 TPCN1 389495 sc-eQTL 6.34e-01 0.0811 0.17 0.05 Pro_T L2
ENSG00000089060 SLC8B1 251052 sc-eQTL 8.02e-01 -0.0493 0.196 0.051 intMono L2
ENSG00000089127 OAS1 703762 sc-eQTL 5.07e-01 0.0712 0.107 0.051 intMono L2
ENSG00000111331 OAS3 672101 sc-eQTL 6.19e-01 0.069 0.139 0.051 intMono L2
ENSG00000111335 OAS2 632150 sc-eQTL 7.10e-01 0.0509 0.137 0.051 intMono L2
ENSG00000122965 RBM19 -355780 sc-eQTL 1.50e-02 0.436 0.178 0.051 intMono L2
ENSG00000123064 DDX54 425066 sc-eQTL 1.55e-01 0.246 0.172 0.051 intMono L2
ENSG00000139405 RITA1 425019 sc-eQTL 5.26e-01 -0.122 0.192 0.051 intMono L2
ENSG00000139410 SDSL 188165 sc-eQTL 1.19e-01 -0.293 0.188 0.051 intMono L2
ENSG00000151176 PLBD2 251979 sc-eQTL 3.82e-01 0.152 0.173 0.051 intMono L2
ENSG00000186815 TPCN1 389495 sc-eQTL 7.16e-01 0.056 0.153 0.051 intMono L2
ENSG00000089060 SLC8B1 251052 sc-eQTL 9.92e-02 -0.271 0.164 0.052 ncMono L2
ENSG00000089127 OAS1 703762 sc-eQTL 4.51e-01 0.07 0.0926 0.052 ncMono L2
ENSG00000111331 OAS3 672101 sc-eQTL 9.41e-01 -0.0102 0.139 0.052 ncMono L2
ENSG00000111335 OAS2 632150 sc-eQTL 2.58e-01 0.153 0.134 0.052 ncMono L2
ENSG00000122965 RBM19 -355780 sc-eQTL 4.34e-01 -0.148 0.188 0.052 ncMono L2
ENSG00000123064 DDX54 425066 sc-eQTL 8.38e-01 -0.0356 0.174 0.052 ncMono L2
ENSG00000139405 RITA1 425019 sc-eQTL 5.95e-01 -0.105 0.197 0.052 ncMono L2
ENSG00000139410 SDSL 188165 sc-eQTL 9.35e-01 -0.0133 0.163 0.052 ncMono L2
ENSG00000151176 PLBD2 251979 sc-eQTL 5.98e-01 0.09 0.17 0.052 ncMono L2
ENSG00000186815 TPCN1 389495 sc-eQTL 3.22e-01 0.149 0.151 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000135094 SDS 184244 eQTL 0.0267 -0.137 0.0617 0.0 0.0 0.0569
ENSG00000139410 SDSL 188165 eQTL 0.0363 -0.0956 0.0456 0.0 0.0 0.0569

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina