Genes within 1Mb (chr12:113346554:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -12939 eQTL 3.65e-79 0.446 0.0215 0.0 0.0 0.272
ENSG00000089169 RPH3A 776174 eQTL 3.44e-02 0.0689 0.0325 0.0 0.0 0.272
ENSG00000111331 OAS3 408110 eQTL 5.79e-04 -0.0486 0.0141 0.0 0.0 0.272
ENSG00000111335 OAS2 368159 eQTL 1.80e-04 -0.0471 0.0125 0.0 0.0 0.272
ENSG00000111344 RASAL1 210315 eQTL 1.74e-34 0.498 0.039 0.0 0.0081 0.272
ENSG00000122965 RBM19 -619771 eQTL 1.47e-02 -0.0309 0.0126 0.0 0.0 0.272
ENSG00000123064 DDX54 161075 eQTL 1.63e-12 -0.0821 0.0115 0.0 0.0 0.272
ENSG00000135094 SDS -79747 eQTL 2.49e-03 -0.0975 0.0322 0.0 0.0 0.272
ENSG00000139405 RITA1 161028 eQTL 2.67e-61 -0.326 0.0183 0.0 0.0 0.272
ENSG00000139410 SDSL -75826 eQTL 2.00e-04 -0.0884 0.0237 0.00367 0.0024 0.272
ENSG00000151176 PLBD2 -12012 eQTL 1.59e-08 0.0761 0.0134 0.0 0.0 0.272
ENSG00000186710 CFAP73 196696 eQTL 3.68e-08 0.193 0.0347 0.00504 0.00519 0.272


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089060 SLC8B1 -12939 4.62e-05 3.46e-05 6.45e-06 1.59e-05 6.02e-06 1.61e-05 4.66e-05 4.84e-06 3.27e-05 1.63e-05 4.06e-05 1.82e-05 5.08e-05 1.42e-05 7.14e-06 2.04e-05 1.77e-05 2.74e-05 7.86e-06 7.07e-06 1.64e-05 3.64e-05 3.29e-05 9.15e-06 4.61e-05 8.39e-06 1.51e-05 1.33e-05 3.36e-05 2.53e-05 2.07e-05 1.63e-06 2.6e-06 7.05e-06 1.21e-05 5.84e-06 3.16e-06 3.26e-06 4.8e-06 3.36e-06 1.67e-06 4e-05 4e-06 3.78e-07 2.7e-06 3.94e-06 4.04e-06 1.69e-06 1.54e-06
ENSG00000111344 RASAL1 210315 7.14e-06 4.57e-06 2.23e-06 3.02e-06 1.52e-06 1.54e-06 4.6e-06 9.82e-07 4.26e-06 1.99e-06 5.25e-06 3.38e-06 7.55e-06 2.04e-06 1.02e-06 3.05e-06 1.99e-06 4.03e-06 1.45e-06 1.55e-06 2.93e-06 4.86e-06 4.62e-06 1.4e-06 4.54e-06 1.32e-06 2.51e-06 1.55e-06 4.3e-06 4.12e-06 2.71e-06 1.07e-06 7.38e-07 1.88e-06 2.08e-06 2.66e-06 9.3e-07 1.91e-06 8.39e-07 4.07e-07 4.32e-07 4.63e-06 2.83e-06 1.68e-07 8.47e-07 1.21e-06 1.14e-06 7.42e-07 4.78e-07
ENSG00000123064 DDX54 161075 1.3e-05 8.04e-06 2.55e-06 4.57e-06 2.44e-06 3.82e-06 9.57e-06 1.28e-06 5.51e-06 3.75e-06 1.04e-05 4.64e-06 1.12e-05 3.18e-06 2.83e-06 5.31e-06 3.28e-06 7.27e-06 2.53e-06 2.94e-06 5.45e-06 8e-06 6.94e-06 2.75e-06 8.54e-06 2.38e-06 4.47e-06 3.55e-06 7.04e-06 7.69e-06 4.33e-06 9.65e-07 1.21e-06 2.33e-06 2.6e-06 2.87e-06 1.13e-06 2.15e-06 1.38e-06 8.74e-07 8.22e-07 8.09e-06 3.39e-06 1.61e-07 1.07e-06 1.73e-06 1.23e-06 6.85e-07 5.68e-07
ENSG00000139405 RITA1 161028 1.31e-05 8.04e-06 2.55e-06 4.57e-06 2.44e-06 3.82e-06 9.57e-06 1.28e-06 5.48e-06 3.75e-06 1.04e-05 4.64e-06 1.12e-05 3.18e-06 2.83e-06 5.31e-06 3.28e-06 7.27e-06 2.53e-06 2.94e-06 5.45e-06 8e-06 6.94e-06 2.75e-06 8.54e-06 2.38e-06 4.47e-06 3.55e-06 7.04e-06 7.69e-06 4.33e-06 9.65e-07 1.21e-06 2.33e-06 2.6e-06 2.87e-06 1.13e-06 2.15e-06 1.38e-06 8.74e-07 8.22e-07 8.09e-06 3.39e-06 1.61e-07 1.07e-06 1.73e-06 1.23e-06 6.85e-07 5.68e-07
ENSG00000139410 SDSL -75826 4.35e-05 2.15e-05 4.41e-06 1.12e-05 3.42e-06 1.03e-05 2.7e-05 3.37e-06 1.74e-05 8.86e-06 2.41e-05 9.37e-06 3.08e-05 7.21e-06 5.45e-06 1.09e-05 8.74e-06 1.79e-05 4.61e-06 5.07e-06 9.54e-06 2.06e-05 1.9e-05 5.15e-06 2.63e-05 5.53e-06 8.97e-06 8.09e-06 1.98e-05 1.58e-05 1.28e-05 1.65e-06 1.9e-06 3.99e-06 7.8e-06 4.06e-06 1.79e-06 2.89e-06 3.16e-06 2.27e-06 1.55e-06 2.28e-05 3.74e-06 2.81e-07 2.07e-06 2.63e-06 3.43e-06 1.28e-06 1.28e-06
ENSG00000151176 PLBD2 -12012 4.67e-05 3.47e-05 6.44e-06 1.6e-05 6.17e-06 1.63e-05 4.7e-05 4.96e-06 3.36e-05 1.64e-05 4.09e-05 1.86e-05 5.15e-05 1.45e-05 7.23e-06 2.1e-05 1.8e-05 2.76e-05 7.91e-06 7.09e-06 1.65e-05 3.68e-05 3.3e-05 9.31e-06 4.72e-05 8.49e-06 1.53e-05 1.36e-05 3.39e-05 2.57e-05 2.08e-05 1.61e-06 2.57e-06 7.08e-06 1.23e-05 5.85e-06 3.16e-06 3.25e-06 4.95e-06 3.36e-06 1.66e-06 4.06e-05 4.04e-06 3.84e-07 2.71e-06 4.15e-06 4.23e-06 1.69e-06 1.5e-06
ENSG00000186710 CFAP73 196696 8.09e-06 5e-06 2.44e-06 3.41e-06 1.76e-06 1.71e-06 6.45e-06 9.91e-07 5.13e-06 2.41e-06 6.45e-06 3.17e-06 7.56e-06 2.31e-06 1.57e-06 3.89e-06 1.81e-06 3.77e-06 1.63e-06 2.02e-06 3.56e-06 5.45e-06 4.82e-06 1.53e-06 4.9e-06 1.72e-06 2.32e-06 1.78e-06 4.4e-06 4.4e-06 2.64e-06 9.95e-07 8.03e-07 1.44e-06 2.13e-06 2.86e-06 9.64e-07 1.93e-06 9.54e-07 5.33e-07 5.68e-07 5.79e-06 2.92e-06 1.81e-07 7.68e-07 1.49e-06 9.85e-07 7.76e-07 4.55e-07