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Genes within 1Mb (chr12:112711468:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 292630 sc-eQTL 5.17e-02 0.218 0.112 0.05 CD4_CTL L2
ENSG00000089022 MAPKAPK5 869240 sc-eQTL 9.34e-02 0.365 0.217 0.05 CD4_CTL L2
ENSG00000089060 SLC8B1 -648025 sc-eQTL 6.68e-02 -0.371 0.201 0.05 CD4_CTL L2
ENSG00000089127 OAS1 -195315 sc-eQTL 5.86e-01 0.0989 0.181 0.05 CD4_CTL L2
ENSG00000089248 ERP29 698120 sc-eQTL 5.99e-01 0.0834 0.159 0.05 CD4_CTL L2
ENSG00000111300 NAA25 602672 sc-eQTL 6.84e-03 -0.57 0.208 0.05 CD4_CTL L2
ENSG00000111331 OAS3 -226976 sc-eQTL 5.19e-01 0.132 0.204 0.05 CD4_CTL L2
ENSG00000111335 OAS2 -266927 sc-eQTL 8.64e-01 0.0341 0.199 0.05 CD4_CTL L2
ENSG00000123064 DDX54 -474011 sc-eQTL 1.17e-01 0.321 0.204 0.05 CD4_CTL L2
ENSG00000135144 DTX1 -345241 sc-eQTL 2.48e-02 0.328 0.145 0.05 CD4_CTL L2
ENSG00000135148 TRAFD1 585930 sc-eQTL 3.65e-01 0.193 0.213 0.05 CD4_CTL L2
ENSG00000139405 RITA1 -474058 sc-eQTL 5.68e-01 0.117 0.204 0.05 CD4_CTL L2
ENSG00000151176 PLBD2 -647098 sc-eQTL 7.35e-01 0.0711 0.21 0.05 CD4_CTL L2
ENSG00000173064 HECTD4 329029 sc-eQTL 9.38e-01 0.0141 0.181 0.05 CD4_CTL L2
ENSG00000179295 PTPN11 293117 sc-eQTL 5.16e-01 0.132 0.203 0.05 CD4_CTL L2
ENSG00000186815 TPCN1 -509582 sc-eQTL 5.52e-01 0.114 0.192 0.05 CD4_CTL L2
ENSG00000198270 TMEM116 698283 sc-eQTL 2.10e-01 0.266 0.211 0.05 CD4_CTL L2
ENSG00000234608 MAPKAPK5-AS1 868566 sc-eQTL 4.65e-02 0.403 0.201 0.05 CD4_CTL L2
ENSG00000089009 RPL6 292630 sc-eQTL 4.40e-02 0.265 0.131 0.05 CD8_TEM L2
ENSG00000089022 MAPKAPK5 869240 sc-eQTL 5.81e-01 -0.121 0.22 0.05 CD8_TEM L2
ENSG00000089060 SLC8B1 -648025 sc-eQTL 2.65e-01 -0.232 0.207 0.05 CD8_TEM L2
ENSG00000089127 OAS1 -195315 sc-eQTL 9.25e-01 -0.0156 0.164 0.05 CD8_TEM L2
ENSG00000089248 ERP29 698120 sc-eQTL 8.17e-01 -0.0397 0.171 0.05 CD8_TEM L2
ENSG00000111300 NAA25 602672 sc-eQTL 9.82e-01 0.00452 0.201 0.05 CD8_TEM L2
ENSG00000111331 OAS3 -226976 sc-eQTL 2.90e-01 0.19 0.179 0.05 CD8_TEM L2
ENSG00000111335 OAS2 -266927 sc-eQTL 5.39e-01 0.0962 0.156 0.05 CD8_TEM L2
ENSG00000123064 DDX54 -474011 sc-eQTL 6.63e-01 -0.0941 0.215 0.05 CD8_TEM L2
ENSG00000135148 TRAFD1 585930 sc-eQTL 1.13e-01 -0.317 0.199 0.05 CD8_TEM L2
ENSG00000139405 RITA1 -474058 sc-eQTL 7.09e-01 0.0734 0.196 0.05 CD8_TEM L2
ENSG00000151176 PLBD2 -647098 sc-eQTL 1.92e-01 -0.28 0.214 0.05 CD8_TEM L2
ENSG00000173064 HECTD4 329029 sc-eQTL 1.78e-01 -0.254 0.188 0.05 CD8_TEM L2
ENSG00000179295 PTPN11 293117 sc-eQTL 3.37e-01 -0.198 0.206 0.05 CD8_TEM L2
ENSG00000186815 TPCN1 -509582 sc-eQTL 3.54e-01 -0.191 0.205 0.05 CD8_TEM L2
ENSG00000198270 TMEM116 698283 sc-eQTL 2.40e-01 -0.246 0.209 0.05 CD8_TEM L2
ENSG00000234608 MAPKAPK5-AS1 868566 sc-eQTL 3.31e-01 0.197 0.202 0.05 CD8_TEM L2
ENSG00000089009 RPL6 292630 sc-eQTL 6.40e-01 0.0435 0.093 0.05 Pro_T L2
ENSG00000089022 MAPKAPK5 869240 sc-eQTL 8.20e-01 0.0487 0.214 0.05 Pro_T L2
ENSG00000089060 SLC8B1 -648025 sc-eQTL 8.89e-01 0.0294 0.21 0.05 Pro_T L2
ENSG00000089127 OAS1 -195315 sc-eQTL 2.94e-01 0.133 0.127 0.05 Pro_T L2
ENSG00000089248 ERP29 698120 sc-eQTL 7.09e-01 0.0479 0.128 0.05 Pro_T L2
ENSG00000111300 NAA25 602672 sc-eQTL 7.75e-01 -0.059 0.206 0.05 Pro_T L2
ENSG00000111331 OAS3 -226976 sc-eQTL 9.06e-01 -0.0212 0.179 0.05 Pro_T L2
ENSG00000111335 OAS2 -266927 sc-eQTL 4.24e-02 0.309 0.151 0.05 Pro_T L2
ENSG00000123064 DDX54 -474011 sc-eQTL 8.16e-01 -0.042 0.18 0.05 Pro_T L2
ENSG00000135144 DTX1 -345241 sc-eQTL 1.32e-01 -0.24 0.159 0.05 Pro_T L2
ENSG00000135148 TRAFD1 585930 sc-eQTL 9.49e-02 0.352 0.21 0.05 Pro_T L2
ENSG00000139405 RITA1 -474058 sc-eQTL 7.79e-01 0.0531 0.189 0.05 Pro_T L2
ENSG00000151176 PLBD2 -647098 sc-eQTL 3.81e-01 0.181 0.206 0.05 Pro_T L2
ENSG00000173064 HECTD4 329029 sc-eQTL 3.25e-01 -0.185 0.187 0.05 Pro_T L2
ENSG00000179295 PTPN11 293117 sc-eQTL 2.47e-01 -0.198 0.171 0.05 Pro_T L2
ENSG00000186815 TPCN1 -509582 sc-eQTL 2.62e-01 0.21 0.187 0.05 Pro_T L2
ENSG00000198270 TMEM116 698283 sc-eQTL 6.82e-01 0.0874 0.213 0.05 Pro_T L2
ENSG00000234608 MAPKAPK5-AS1 868566 sc-eQTL 6.81e-01 -0.0791 0.192 0.05 Pro_T L2
ENSG00000089009 RPL6 292630 sc-eQTL 2.31e-01 0.12 0.1 0.051 cDC L2
ENSG00000089022 MAPKAPK5 869240 sc-eQTL 2.21e-01 -0.267 0.217 0.051 cDC L2
ENSG00000089060 SLC8B1 -648025 sc-eQTL 1.12e-02 0.546 0.213 0.051 cDC L2
ENSG00000089127 OAS1 -195315 sc-eQTL 4.58e-01 -0.112 0.151 0.051 cDC L2
ENSG00000089169 RPH3A 141088 sc-eQTL 1.25e-01 -0.282 0.183 0.051 cDC L2
ENSG00000089248 ERP29 698120 sc-eQTL 9.60e-02 -0.255 0.153 0.051 cDC L2
ENSG00000111275 ALDH2 944581 sc-eQTL 9.21e-01 -0.0159 0.16 0.051 cDC L2
ENSG00000111300 NAA25 602672 sc-eQTL 3.68e-01 -0.185 0.205 0.051 cDC L2
ENSG00000111331 OAS3 -226976 sc-eQTL 7.30e-01 0.052 0.151 0.051 cDC L2
ENSG00000111335 OAS2 -266927 sc-eQTL 1.85e-01 -0.227 0.17 0.051 cDC L2
ENSG00000123064 DDX54 -474011 sc-eQTL 5.51e-01 0.124 0.208 0.051 cDC L2
ENSG00000135094 SDS -714833 sc-eQTL 2.02e-01 -0.232 0.181 0.051 cDC L2
ENSG00000135148 TRAFD1 585930 sc-eQTL 1.57e-01 -0.293 0.206 0.051 cDC L2
ENSG00000139405 RITA1 -474058 sc-eQTL 2.57e-01 0.232 0.204 0.051 cDC L2
ENSG00000139410 SDSL -710912 sc-eQTL 2.69e-01 -0.213 0.193 0.051 cDC L2
ENSG00000151176 PLBD2 -647098 sc-eQTL 5.00e-01 0.143 0.211 0.051 cDC L2
ENSG00000166578 IQCD -509626 sc-eQTL 3.83e-01 -0.157 0.179 0.051 cDC L2
ENSG00000173064 HECTD4 329029 sc-eQTL 6.09e-01 -0.0995 0.194 0.051 cDC L2
ENSG00000179295 PTPN11 293117 sc-eQTL 4.34e-01 0.156 0.199 0.051 cDC L2
ENSG00000186815 TPCN1 -509582 sc-eQTL 8.15e-01 -0.0369 0.157 0.051 cDC L2
ENSG00000198270 TMEM116 698283 sc-eQTL 2.30e-01 -0.235 0.196 0.051 cDC L2
ENSG00000234608 MAPKAPK5-AS1 868566 sc-eQTL 4.07e-01 0.182 0.219 0.051 cDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000234608 MAPKAPK5-AS1 868566 eQTL 0.0329 -0.0653 0.0306 0.00125 0.0 0.0447

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina