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Genes within 1Mb (chr12:111295488:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089022 MAPKAPK5 -546740 sc-eQTL 5.05e-01 0.152 0.228 0.051 B_Activated L2
ENSG00000089234 BRAP -390468 sc-eQTL 2.42e-01 0.266 0.227 0.051 B_Activated L2
ENSG00000089248 ERP29 -717860 sc-eQTL 6.16e-01 -0.108 0.214 0.051 B_Activated L2
ENSG00000111229 ARPC3 845066 sc-eQTL 6.06e-01 -0.0853 0.165 0.051 B_Activated L2
ENSG00000111231 GPN3 826220 sc-eQTL 3.61e-01 0.189 0.207 0.051 B_Activated L2
ENSG00000111237 VPS29 793377 sc-eQTL 3.34e-01 -0.218 0.225 0.051 B_Activated L2
ENSG00000111252 SH2B3 -110460 sc-eQTL 8.08e-01 0.0506 0.208 0.051 B_Activated L2
ENSG00000111271 ACAD10 -390568 sc-eQTL 7.47e-01 -0.0703 0.218 0.051 B_Activated L2
ENSG00000111275 ALDH2 -471399 sc-eQTL 4.26e-01 0.166 0.208 0.051 B_Activated L2
ENSG00000111300 NAA25 -813308 sc-eQTL 4.85e-02 0.465 0.234 0.051 B_Activated L2
ENSG00000122986 HVCN1 590538 sc-eQTL 9.88e-01 -0.00278 0.178 0.051 B_Activated L2
ENSG00000135148 TRAFD1 -830050 sc-eQTL 8.14e-01 -0.051 0.217 0.051 B_Activated L2
ENSG00000186298 PPP1CC 552549 sc-eQTL 2.94e-01 0.252 0.239 0.051 B_Activated L2
ENSG00000196510 ANAPC7 891758 sc-eQTL 7.86e-01 -0.0597 0.219 0.051 B_Activated L2
ENSG00000196850 PPTC7 712170 sc-eQTL 9.99e-02 -0.367 0.222 0.051 B_Activated L2
ENSG00000198270 TMEM116 -717697 sc-eQTL 3.43e-01 -0.197 0.207 0.051 B_Activated L2
ENSG00000198324 PHETA1 -73633 sc-eQTL 9.24e-01 0.0168 0.175 0.051 B_Activated L2
ENSG00000204842 ATXN2 -304188 sc-eQTL 4.23e-01 -0.175 0.218 0.051 B_Activated L2
ENSG00000204852 TCTN1 681461 sc-eQTL 2.63e-01 0.25 0.223 0.051 B_Activated L2
ENSG00000204856 FAM216A 827073 sc-eQTL 2.46e-01 -0.244 0.21 0.051 B_Activated L2
ENSG00000234608 MAPKAPK5-AS1 -547414 sc-eQTL 3.41e-01 -0.219 0.229 0.051 B_Activated L2
ENSG00000089022 MAPKAPK5 -546740 sc-eQTL 7.82e-01 0.0728 0.262 0.052 PB L2
ENSG00000089234 BRAP -390468 sc-eQTL 7.71e-01 0.0675 0.231 0.052 PB L2
ENSG00000089248 ERP29 -717860 sc-eQTL 6.43e-01 0.065 0.14 0.052 PB L2
ENSG00000111229 ARPC3 845066 sc-eQTL 6.04e-01 -0.0759 0.146 0.052 PB L2
ENSG00000111231 GPN3 826220 sc-eQTL 8.19e-01 0.049 0.214 0.052 PB L2
ENSG00000111237 VPS29 793377 sc-eQTL 7.57e-01 0.0566 0.183 0.052 PB L2
ENSG00000111252 SH2B3 -110460 sc-eQTL 2.69e-01 -0.275 0.247 0.052 PB L2
ENSG00000111271 ACAD10 -390568 sc-eQTL 7.59e-01 0.0774 0.251 0.052 PB L2
ENSG00000111275 ALDH2 -471399 sc-eQTL 1.84e-01 -0.326 0.244 0.052 PB L2
ENSG00000111300 NAA25 -813308 sc-eQTL 4.47e-01 0.199 0.261 0.052 PB L2
ENSG00000122986 HVCN1 590538 sc-eQTL 7.97e-01 0.0373 0.145 0.052 PB L2
ENSG00000135148 TRAFD1 -830050 sc-eQTL 4.67e-01 0.195 0.267 0.052 PB L2
ENSG00000186298 PPP1CC 552549 sc-eQTL 7.14e-01 -0.0763 0.207 0.052 PB L2
ENSG00000196510 ANAPC7 891758 sc-eQTL 4.59e-01 -0.175 0.235 0.052 PB L2
ENSG00000196850 PPTC7 712170 sc-eQTL 9.36e-01 0.0194 0.239 0.052 PB L2
ENSG00000198270 TMEM116 -717697 sc-eQTL 3.50e-01 -0.25 0.266 0.052 PB L2
ENSG00000198324 PHETA1 -73633 sc-eQTL 8.44e-01 -0.0459 0.232 0.052 PB L2
ENSG00000204842 ATXN2 -304188 sc-eQTL 3.72e-01 -0.237 0.265 0.052 PB L2
ENSG00000204852 TCTN1 681461 sc-eQTL 5.77e-01 -0.113 0.202 0.052 PB L2
ENSG00000204856 FAM216A 827073 sc-eQTL 2.91e-01 0.268 0.253 0.052 PB L2
ENSG00000234608 MAPKAPK5-AS1 -547414 sc-eQTL 1.55e-01 -0.314 0.219 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -546740 eQTL 0.0359 0.0791 0.0376 0.0 0.0 0.0402
ENSG00000089248 ERP29 -717860 eQTL 0.0718 -0.0593 0.0329 0.00199 0.0 0.0402
ENSG00000111275 ALDH2 -471399 pQTL 0.00728 0.165 0.0612 0.0 0.0 0.0452
ENSG00000204852 TCTN1 681461 eQTL 1.71e-02 0.0898 0.0376 0.00186 0.0 0.0402
ENSG00000241680 RPL31P49 834500 eQTL 0.107 -0.156 0.0965 0.00109 0.0 0.0402
ENSG00000278993 AC002350.1 793874 eQTL 0.0456 0.144 0.0719 0.00179 0.0 0.0402

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -546740 6.8e-07 3.35e-07 1.27e-07 3.19e-07 9.82e-08 1.74e-07 4.25e-07 1.38e-07 3.51e-07 2.12e-07 4.13e-07 3.27e-07 5.39e-07 1.07e-07 1.51e-07 2e-07 2.34e-07 3.39e-07 1.77e-07 1.31e-07 1.91e-07 3.13e-07 3.02e-07 1.25e-07 4.67e-07 2.34e-07 2.57e-07 1.95e-07 2.78e-07 3.3e-07 1.95e-07 5.99e-08 5.58e-08 1.39e-07 2.84e-07 7.98e-08 1.15e-07 9.46e-08 4.37e-08 5.61e-08 8.09e-08 2.8e-07 2.47e-08 1.72e-08 1.1e-07 1.81e-08 9.95e-08 1.22e-08 5.19e-08
ENSG00000278993 AC002350.1 793874 3.02e-07 1.42e-07 6.45e-08 2.07e-07 9.94e-08 8.63e-08 1.99e-07 6.12e-08 1.66e-07 9.35e-08 1.62e-07 1.31e-07 2.05e-07 8.13e-08 5.36e-08 8.71e-08 4.25e-08 1.72e-07 7.16e-08 5.48e-08 1.26e-07 1.56e-07 1.58e-07 3.58e-08 1.85e-07 1.43e-07 1.22e-07 1.04e-07 1.31e-07 1.06e-07 1.06e-07 3.68e-08 3.38e-08 9.08e-08 3.36e-08 3.05e-08 4.43e-08 7.25e-08 6.62e-08 5.13e-08 6.07e-08 1.46e-07 3.4e-08 7.72e-09 3.29e-08 1.55e-08 7e-08 2.13e-09 4.94e-08