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Genes within 1Mb (chr12:111272662:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089022 MAPKAPK5 -569566 sc-eQTL 4.30e-01 0.179 0.227 0.051 B_Activated L2
ENSG00000089234 BRAP -413294 sc-eQTL 3.08e-01 0.231 0.226 0.051 B_Activated L2
ENSG00000089248 ERP29 -740686 sc-eQTL 5.85e-01 -0.117 0.214 0.051 B_Activated L2
ENSG00000111229 ARPC3 822240 sc-eQTL 7.34e-01 -0.0558 0.164 0.051 B_Activated L2
ENSG00000111231 GPN3 803394 sc-eQTL 9.28e-02 0.346 0.205 0.051 B_Activated L2
ENSG00000111237 VPS29 770551 sc-eQTL 6.18e-01 -0.112 0.224 0.051 B_Activated L2
ENSG00000111252 SH2B3 -133286 sc-eQTL 7.58e-01 -0.064 0.207 0.051 B_Activated L2
ENSG00000111271 ACAD10 -413394 sc-eQTL 6.63e-01 0.0947 0.217 0.051 B_Activated L2
ENSG00000111275 ALDH2 -494225 sc-eQTL 3.20e-01 0.206 0.207 0.051 B_Activated L2
ENSG00000111300 NAA25 -836134 sc-eQTL 2.08e-02 0.541 0.232 0.051 B_Activated L2
ENSG00000122986 HVCN1 567712 sc-eQTL 6.35e-01 -0.0845 0.178 0.051 B_Activated L2
ENSG00000135148 TRAFD1 -852876 sc-eQTL 7.69e-01 -0.0636 0.216 0.051 B_Activated L2
ENSG00000174437 ATP2A2 991906 sc-eQTL 2.75e-01 0.235 0.214 0.051 B_Activated L2
ENSG00000186298 PPP1CC 529723 sc-eQTL 2.26e-01 0.289 0.238 0.051 B_Activated L2
ENSG00000196510 ANAPC7 868932 sc-eQTL 7.13e-01 -0.0804 0.219 0.051 B_Activated L2
ENSG00000196850 PPTC7 689344 sc-eQTL 2.10e-01 -0.28 0.222 0.051 B_Activated L2
ENSG00000198270 TMEM116 -740523 sc-eQTL 9.53e-01 -0.0121 0.207 0.051 B_Activated L2
ENSG00000198324 PHETA1 -96459 sc-eQTL 8.47e-01 -0.0337 0.174 0.051 B_Activated L2
ENSG00000204842 ATXN2 -327014 sc-eQTL 2.68e-01 -0.241 0.217 0.051 B_Activated L2
ENSG00000204852 TCTN1 658635 sc-eQTL 6.45e-01 0.103 0.222 0.051 B_Activated L2
ENSG00000204856 FAM216A 804247 sc-eQTL 2.50e-01 -0.241 0.209 0.051 B_Activated L2
ENSG00000234608 MAPKAPK5-AS1 -570240 sc-eQTL 2.00e-01 -0.293 0.228 0.051 B_Activated L2
ENSG00000089022 MAPKAPK5 -569566 sc-eQTL 5.01e-01 0.181 0.267 0.052 PB L2
ENSG00000089234 BRAP -413294 sc-eQTL 7.76e-01 0.0672 0.236 0.052 PB L2
ENSG00000089248 ERP29 -740686 sc-eQTL 2.24e-01 0.174 0.142 0.052 PB L2
ENSG00000111229 ARPC3 822240 sc-eQTL 4.84e-01 -0.105 0.149 0.052 PB L2
ENSG00000111231 GPN3 803394 sc-eQTL 3.76e-01 0.194 0.218 0.052 PB L2
ENSG00000111237 VPS29 770551 sc-eQTL 2.26e-01 -0.226 0.186 0.052 PB L2
ENSG00000111252 SH2B3 -133286 sc-eQTL 5.13e-01 -0.166 0.254 0.052 PB L2
ENSG00000111271 ACAD10 -413394 sc-eQTL 6.88e-01 0.103 0.257 0.052 PB L2
ENSG00000111275 ALDH2 -494225 sc-eQTL 3.86e-01 -0.218 0.25 0.052 PB L2
ENSG00000111300 NAA25 -836134 sc-eQTL 6.92e-02 0.483 0.263 0.052 PB L2
ENSG00000122986 HVCN1 567712 sc-eQTL 3.80e-01 -0.13 0.148 0.052 PB L2
ENSG00000135148 TRAFD1 -852876 sc-eQTL 5.77e-01 0.153 0.273 0.052 PB L2
ENSG00000174437 ATP2A2 991906 sc-eQTL 5.04e-01 -0.112 0.167 0.052 PB L2
ENSG00000186298 PPP1CC 529723 sc-eQTL 8.30e-01 -0.0457 0.212 0.052 PB L2
ENSG00000196510 ANAPC7 868932 sc-eQTL 3.62e-01 -0.22 0.24 0.052 PB L2
ENSG00000196850 PPTC7 689344 sc-eQTL 7.96e-01 -0.0633 0.244 0.052 PB L2
ENSG00000198270 TMEM116 -740523 sc-eQTL 9.64e-01 -0.0123 0.273 0.052 PB L2
ENSG00000198324 PHETA1 -96459 sc-eQTL 5.74e-01 0.134 0.237 0.052 PB L2
ENSG00000204842 ATXN2 -327014 sc-eQTL 8.05e-01 -0.0672 0.272 0.052 PB L2
ENSG00000204852 TCTN1 658635 sc-eQTL 1.04e-01 -0.335 0.204 0.052 PB L2
ENSG00000204856 FAM216A 804247 sc-eQTL 4.35e-01 0.203 0.259 0.052 PB L2
ENSG00000234608 MAPKAPK5-AS1 -570240 sc-eQTL 7.40e-01 -0.0752 0.226 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -569566 eQTL 0.0161 0.0959 0.0398 0.0 0.0 0.0358
ENSG00000089248 ERP29 -740686 eQTL 0.122 -0.0539 0.0348 0.00159 0.0 0.0358
ENSG00000111275 ALDH2 -494225 pQTL 0.00615 0.181 0.0659 0.0 0.0 0.039
ENSG00000204852 TCTN1 658635 eQTL 2.73e-02 0.088 0.0398 0.00146 0.0 0.0358
ENSG00000241680 RPL31P49 811674 eQTL 0.0952 -0.17 0.102 0.00113 0.0 0.0358
ENSG00000278993 AC002350.1 771048 eQTL 0.0088 0.199 0.0759 0.00451 0.00132 0.0358

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -569566 3.21e-07 1.67e-07 5.64e-08 2.36e-07 9.8e-08 7.75e-08 2.24e-07 5.85e-08 1.71e-07 8.53e-08 1.76e-07 1.52e-07 2.45e-07 8.44e-08 5.97e-08 7.74e-08 4.18e-08 1.56e-07 7.12e-08 5.48e-08 1.22e-07 1.42e-07 1.64e-07 3.42e-08 2.37e-07 1.22e-07 1.2e-07 1.04e-07 1.32e-07 1.38e-07 1.26e-07 3.59e-08 3.51e-08 9.8e-08 5.16e-08 2.79e-08 4.28e-08 8.76e-08 6.28e-08 5.35e-08 5.33e-08 1.59e-07 5.39e-08 1.12e-08 3.4e-08 1.68e-08 1.21e-07 1.91e-09 5.01e-08
ENSG00000278993 AC002350.1 771048 2.74e-07 1.3e-07 3.72e-08 1.82e-07 9.01e-08 9.76e-08 1.49e-07 5.19e-08 1.45e-07 4.74e-08 1.57e-07 9.19e-08 1.47e-07 7.13e-08 6.02e-08 7.17e-08 3.94e-08 1.18e-07 5.36e-08 4.04e-08 1.04e-07 1.27e-07 1.39e-07 3.49e-08 1.46e-07 1.14e-07 1.07e-07 9.36e-08 1.09e-07 1.07e-07 9.92e-08 3.92e-08 3.28e-08 8.55e-08 7.51e-08 3.95e-08 5.05e-08 9.62e-08 6.56e-08 3.98e-08 3.89e-08 1.33e-07 4.52e-08 1.57e-08 5.87e-08 1.83e-08 1.23e-07 3.92e-09 4.73e-08