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Genes within 1Mb (chr12:111271249:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089022 MAPKAPK5 -570979 sc-eQTL 4.30e-01 0.179 0.227 0.051 B_Activated L2
ENSG00000089234 BRAP -414707 sc-eQTL 3.08e-01 0.231 0.226 0.051 B_Activated L2
ENSG00000089248 ERP29 -742099 sc-eQTL 5.85e-01 -0.117 0.214 0.051 B_Activated L2
ENSG00000111229 ARPC3 820827 sc-eQTL 7.34e-01 -0.0558 0.164 0.051 B_Activated L2
ENSG00000111231 GPN3 801981 sc-eQTL 9.28e-02 0.346 0.205 0.051 B_Activated L2
ENSG00000111237 VPS29 769138 sc-eQTL 6.18e-01 -0.112 0.224 0.051 B_Activated L2
ENSG00000111252 SH2B3 -134699 sc-eQTL 7.58e-01 -0.064 0.207 0.051 B_Activated L2
ENSG00000111271 ACAD10 -414807 sc-eQTL 6.63e-01 0.0947 0.217 0.051 B_Activated L2
ENSG00000111275 ALDH2 -495638 sc-eQTL 3.20e-01 0.206 0.207 0.051 B_Activated L2
ENSG00000111300 NAA25 -837547 sc-eQTL 2.08e-02 0.541 0.232 0.051 B_Activated L2
ENSG00000122986 HVCN1 566299 sc-eQTL 6.35e-01 -0.0845 0.178 0.051 B_Activated L2
ENSG00000135148 TRAFD1 -854289 sc-eQTL 7.69e-01 -0.0636 0.216 0.051 B_Activated L2
ENSG00000174437 ATP2A2 990493 sc-eQTL 2.75e-01 0.235 0.214 0.051 B_Activated L2
ENSG00000186298 PPP1CC 528310 sc-eQTL 2.26e-01 0.289 0.238 0.051 B_Activated L2
ENSG00000196510 ANAPC7 867519 sc-eQTL 7.13e-01 -0.0804 0.219 0.051 B_Activated L2
ENSG00000196850 PPTC7 687931 sc-eQTL 2.10e-01 -0.28 0.222 0.051 B_Activated L2
ENSG00000198270 TMEM116 -741936 sc-eQTL 9.53e-01 -0.0121 0.207 0.051 B_Activated L2
ENSG00000198324 PHETA1 -97872 sc-eQTL 8.47e-01 -0.0337 0.174 0.051 B_Activated L2
ENSG00000204842 ATXN2 -328427 sc-eQTL 2.68e-01 -0.241 0.217 0.051 B_Activated L2
ENSG00000204852 TCTN1 657222 sc-eQTL 6.45e-01 0.103 0.222 0.051 B_Activated L2
ENSG00000204856 FAM216A 802834 sc-eQTL 2.50e-01 -0.241 0.209 0.051 B_Activated L2
ENSG00000234608 MAPKAPK5-AS1 -571653 sc-eQTL 2.00e-01 -0.293 0.228 0.051 B_Activated L2
ENSG00000089022 MAPKAPK5 -570979 sc-eQTL 5.01e-01 0.181 0.267 0.052 PB L2
ENSG00000089234 BRAP -414707 sc-eQTL 7.76e-01 0.0672 0.236 0.052 PB L2
ENSG00000089248 ERP29 -742099 sc-eQTL 2.24e-01 0.174 0.142 0.052 PB L2
ENSG00000111229 ARPC3 820827 sc-eQTL 4.84e-01 -0.105 0.149 0.052 PB L2
ENSG00000111231 GPN3 801981 sc-eQTL 3.76e-01 0.194 0.218 0.052 PB L2
ENSG00000111237 VPS29 769138 sc-eQTL 2.26e-01 -0.226 0.186 0.052 PB L2
ENSG00000111252 SH2B3 -134699 sc-eQTL 5.13e-01 -0.166 0.254 0.052 PB L2
ENSG00000111271 ACAD10 -414807 sc-eQTL 6.88e-01 0.103 0.257 0.052 PB L2
ENSG00000111275 ALDH2 -495638 sc-eQTL 3.86e-01 -0.218 0.25 0.052 PB L2
ENSG00000111300 NAA25 -837547 sc-eQTL 6.92e-02 0.483 0.263 0.052 PB L2
ENSG00000122986 HVCN1 566299 sc-eQTL 3.80e-01 -0.13 0.148 0.052 PB L2
ENSG00000135148 TRAFD1 -854289 sc-eQTL 5.77e-01 0.153 0.273 0.052 PB L2
ENSG00000174437 ATP2A2 990493 sc-eQTL 5.04e-01 -0.112 0.167 0.052 PB L2
ENSG00000186298 PPP1CC 528310 sc-eQTL 8.30e-01 -0.0457 0.212 0.052 PB L2
ENSG00000196510 ANAPC7 867519 sc-eQTL 3.62e-01 -0.22 0.24 0.052 PB L2
ENSG00000196850 PPTC7 687931 sc-eQTL 7.96e-01 -0.0633 0.244 0.052 PB L2
ENSG00000198270 TMEM116 -741936 sc-eQTL 9.64e-01 -0.0123 0.273 0.052 PB L2
ENSG00000198324 PHETA1 -97872 sc-eQTL 5.74e-01 0.134 0.237 0.052 PB L2
ENSG00000204842 ATXN2 -328427 sc-eQTL 8.05e-01 -0.0672 0.272 0.052 PB L2
ENSG00000204852 TCTN1 657222 sc-eQTL 1.04e-01 -0.335 0.204 0.052 PB L2
ENSG00000204856 FAM216A 802834 sc-eQTL 4.35e-01 0.203 0.259 0.052 PB L2
ENSG00000234608 MAPKAPK5-AS1 -571653 sc-eQTL 7.40e-01 -0.0752 0.226 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -570979 eQTL 0.0161 0.0959 0.0398 0.0 0.0 0.0358
ENSG00000089248 ERP29 -742099 eQTL 0.121 -0.054 0.0348 0.0016 0.0 0.0358
ENSG00000111275 ALDH2 -495638 pQTL 0.00595 0.182 0.0659 0.0 0.0 0.039
ENSG00000204852 TCTN1 657222 eQTL 2.77e-02 0.0877 0.0398 0.00144 0.0 0.0358
ENSG00000241680 RPL31P49 810261 eQTL 0.0948 -0.171 0.102 0.00113 0.0 0.0358
ENSG00000278993 AC002350.1 769635 eQTL 0.0088 0.199 0.0759 0.00451 0.00132 0.0358

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -570979 3.71e-07 2.17e-07 6.15e-08 2.87e-07 1.05e-07 1.13e-07 3.42e-07 5.89e-08 1.86e-07 1.11e-07 2.04e-07 1.46e-07 3.48e-07 8.54e-08 6.6e-08 9.11e-08 5.57e-08 2.04e-07 7.36e-08 7.83e-08 1.27e-07 1.7e-07 1.89e-07 4.91e-08 2.86e-07 1.51e-07 1.29e-07 1.26e-07 1.4e-07 1.39e-07 1.35e-07 4.43e-08 4.74e-08 1.03e-07 2.15e-07 3.43e-08 6.39e-08 6.2e-08 4.82e-08 8.03e-08 2.84e-08 1.55e-07 3.4e-08 1.62e-08 4.36e-08 1.01e-08 7.26e-08 0.0 4.83e-08
ENSG00000278993 AC002350.1 769635 2.76e-07 1.34e-07 4.47e-08 2.15e-07 9.25e-08 9.48e-08 1.73e-07 5.43e-08 1.45e-07 5.42e-08 1.55e-07 9e-08 1.59e-07 7.37e-08 5.91e-08 7.53e-08 4.09e-08 1.27e-07 5.75e-08 4.3e-08 1.21e-07 1.27e-07 1.44e-07 2.87e-08 1.63e-07 1.14e-07 1.07e-07 9.61e-08 1.2e-07 1.07e-07 1.02e-07 3.1e-08 4.02e-08 8.7e-08 3.51e-08 3.2e-08 5.65e-08 8.89e-08 6.58e-08 3.75e-08 5.53e-08 1.36e-07 5.21e-08 1.53e-08 3.42e-08 1.89e-08 1.18e-07 1.89e-09 4.88e-08