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Genes within 1Mb (chr12:111269205:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089022 MAPKAPK5 -573023 sc-eQTL 4.30e-01 0.179 0.227 0.051 B_Activated L2
ENSG00000089234 BRAP -416751 sc-eQTL 3.08e-01 0.231 0.226 0.051 B_Activated L2
ENSG00000089248 ERP29 -744143 sc-eQTL 5.85e-01 -0.117 0.214 0.051 B_Activated L2
ENSG00000111229 ARPC3 818783 sc-eQTL 7.34e-01 -0.0558 0.164 0.051 B_Activated L2
ENSG00000111231 GPN3 799937 sc-eQTL 9.28e-02 0.346 0.205 0.051 B_Activated L2
ENSG00000111237 VPS29 767094 sc-eQTL 6.18e-01 -0.112 0.224 0.051 B_Activated L2
ENSG00000111252 SH2B3 -136743 sc-eQTL 7.58e-01 -0.064 0.207 0.051 B_Activated L2
ENSG00000111271 ACAD10 -416851 sc-eQTL 6.63e-01 0.0947 0.217 0.051 B_Activated L2
ENSG00000111275 ALDH2 -497682 sc-eQTL 3.20e-01 0.206 0.207 0.051 B_Activated L2
ENSG00000111300 NAA25 -839591 sc-eQTL 2.08e-02 0.541 0.232 0.051 B_Activated L2
ENSG00000122986 HVCN1 564255 sc-eQTL 6.35e-01 -0.0845 0.178 0.051 B_Activated L2
ENSG00000135148 TRAFD1 -856333 sc-eQTL 7.69e-01 -0.0636 0.216 0.051 B_Activated L2
ENSG00000174437 ATP2A2 988449 sc-eQTL 2.75e-01 0.235 0.214 0.051 B_Activated L2
ENSG00000186298 PPP1CC 526266 sc-eQTL 2.26e-01 0.289 0.238 0.051 B_Activated L2
ENSG00000196510 ANAPC7 865475 sc-eQTL 7.13e-01 -0.0804 0.219 0.051 B_Activated L2
ENSG00000196850 PPTC7 685887 sc-eQTL 2.10e-01 -0.28 0.222 0.051 B_Activated L2
ENSG00000198270 TMEM116 -743980 sc-eQTL 9.53e-01 -0.0121 0.207 0.051 B_Activated L2
ENSG00000198324 PHETA1 -99916 sc-eQTL 8.47e-01 -0.0337 0.174 0.051 B_Activated L2
ENSG00000204842 ATXN2 -330471 sc-eQTL 2.68e-01 -0.241 0.217 0.051 B_Activated L2
ENSG00000204852 TCTN1 655178 sc-eQTL 6.45e-01 0.103 0.222 0.051 B_Activated L2
ENSG00000204856 FAM216A 800790 sc-eQTL 2.50e-01 -0.241 0.209 0.051 B_Activated L2
ENSG00000234608 MAPKAPK5-AS1 -573697 sc-eQTL 2.00e-01 -0.293 0.228 0.051 B_Activated L2
ENSG00000089022 MAPKAPK5 -573023 sc-eQTL 5.01e-01 0.181 0.267 0.052 PB L2
ENSG00000089234 BRAP -416751 sc-eQTL 7.76e-01 0.0672 0.236 0.052 PB L2
ENSG00000089248 ERP29 -744143 sc-eQTL 2.24e-01 0.174 0.142 0.052 PB L2
ENSG00000111229 ARPC3 818783 sc-eQTL 4.84e-01 -0.105 0.149 0.052 PB L2
ENSG00000111231 GPN3 799937 sc-eQTL 3.76e-01 0.194 0.218 0.052 PB L2
ENSG00000111237 VPS29 767094 sc-eQTL 2.26e-01 -0.226 0.186 0.052 PB L2
ENSG00000111252 SH2B3 -136743 sc-eQTL 5.13e-01 -0.166 0.254 0.052 PB L2
ENSG00000111271 ACAD10 -416851 sc-eQTL 6.88e-01 0.103 0.257 0.052 PB L2
ENSG00000111275 ALDH2 -497682 sc-eQTL 3.86e-01 -0.218 0.25 0.052 PB L2
ENSG00000111300 NAA25 -839591 sc-eQTL 6.92e-02 0.483 0.263 0.052 PB L2
ENSG00000122986 HVCN1 564255 sc-eQTL 3.80e-01 -0.13 0.148 0.052 PB L2
ENSG00000135148 TRAFD1 -856333 sc-eQTL 5.77e-01 0.153 0.273 0.052 PB L2
ENSG00000174437 ATP2A2 988449 sc-eQTL 5.04e-01 -0.112 0.167 0.052 PB L2
ENSG00000186298 PPP1CC 526266 sc-eQTL 8.30e-01 -0.0457 0.212 0.052 PB L2
ENSG00000196510 ANAPC7 865475 sc-eQTL 3.62e-01 -0.22 0.24 0.052 PB L2
ENSG00000196850 PPTC7 685887 sc-eQTL 7.96e-01 -0.0633 0.244 0.052 PB L2
ENSG00000198270 TMEM116 -743980 sc-eQTL 9.64e-01 -0.0123 0.273 0.052 PB L2
ENSG00000198324 PHETA1 -99916 sc-eQTL 5.74e-01 0.134 0.237 0.052 PB L2
ENSG00000204842 ATXN2 -330471 sc-eQTL 8.05e-01 -0.0672 0.272 0.052 PB L2
ENSG00000204852 TCTN1 655178 sc-eQTL 1.04e-01 -0.335 0.204 0.052 PB L2
ENSG00000204856 FAM216A 800790 sc-eQTL 4.35e-01 0.203 0.259 0.052 PB L2
ENSG00000234608 MAPKAPK5-AS1 -573697 sc-eQTL 7.40e-01 -0.0752 0.226 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -573023 eQTL 0.0161 0.0959 0.0398 0.0 0.0 0.0358
ENSG00000089248 ERP29 -744143 eQTL 0.121 -0.054 0.0348 0.0016 0.0 0.0358
ENSG00000111275 ALDH2 -497682 pQTL 0.00596 0.182 0.0659 0.0 0.0 0.039
ENSG00000204852 TCTN1 655178 eQTL 2.78e-02 0.0876 0.0398 0.00144 0.0 0.0358
ENSG00000241680 RPL31P49 808217 eQTL 0.0947 -0.171 0.102 0.00113 0.0 0.0358
ENSG00000278993 AC002350.1 767591 eQTL 0.00881 0.199 0.0759 0.0045 0.00132 0.0358

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -573023 1.24e-06 9.28e-07 3.06e-07 6.94e-07 2.79e-07 4.82e-07 1.13e-06 3.49e-07 8.46e-07 3.28e-07 1.36e-06 5.73e-07 1.33e-06 2.1e-07 4.32e-07 4.12e-07 7.78e-07 5.72e-07 8.61e-07 6.52e-07 6.36e-07 9.58e-07 5.81e-07 6.02e-07 1.46e-06 2.99e-07 5.56e-07 5.29e-07 7.07e-07 9.25e-07 4.61e-07 3.85e-08 2.19e-07 6.19e-07 6.02e-07 4.32e-07 5.31e-07 2.4e-07 3.95e-07 9.03e-08 2.87e-07 9.58e-07 9.66e-08 1.89e-07 1.62e-07 7.7e-08 1.82e-07 6.95e-08 9.51e-08
ENSG00000278993 AC002350.1 767591 6.09e-07 3.77e-07 8.51e-08 3.87e-07 9.26e-08 2.08e-07 4.93e-07 1.21e-07 2.53e-07 1.7e-07 4.39e-07 2.55e-07 4.34e-07 8.55e-08 1.5e-07 1.14e-07 1.17e-07 3.12e-07 2.79e-07 1.86e-07 2.09e-07 2.86e-07 2.48e-07 1.34e-07 3.55e-07 2.32e-07 1.83e-07 1.77e-07 2.03e-07 2.75e-07 1.78e-07 8.02e-08 4.55e-08 1.54e-07 3.55e-07 1.09e-07 1.11e-07 1.03e-07 7.63e-08 5.25e-08 9.7e-08 2.65e-07 4.41e-08 8.96e-08 8.68e-08 1.91e-08 9.19e-08 2.31e-08 6.03e-08