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Genes within 1Mb (chr12:111268865:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089022 MAPKAPK5 -573363 sc-eQTL 4.30e-01 0.179 0.227 0.051 B_Activated L2
ENSG00000089234 BRAP -417091 sc-eQTL 3.08e-01 0.231 0.226 0.051 B_Activated L2
ENSG00000089248 ERP29 -744483 sc-eQTL 5.85e-01 -0.117 0.214 0.051 B_Activated L2
ENSG00000111229 ARPC3 818443 sc-eQTL 7.34e-01 -0.0558 0.164 0.051 B_Activated L2
ENSG00000111231 GPN3 799597 sc-eQTL 9.28e-02 0.346 0.205 0.051 B_Activated L2
ENSG00000111237 VPS29 766754 sc-eQTL 6.18e-01 -0.112 0.224 0.051 B_Activated L2
ENSG00000111252 SH2B3 -137083 sc-eQTL 7.58e-01 -0.064 0.207 0.051 B_Activated L2
ENSG00000111271 ACAD10 -417191 sc-eQTL 6.63e-01 0.0947 0.217 0.051 B_Activated L2
ENSG00000111275 ALDH2 -498022 sc-eQTL 3.20e-01 0.206 0.207 0.051 B_Activated L2
ENSG00000111300 NAA25 -839931 sc-eQTL 2.08e-02 0.541 0.232 0.051 B_Activated L2
ENSG00000122986 HVCN1 563915 sc-eQTL 6.35e-01 -0.0845 0.178 0.051 B_Activated L2
ENSG00000135148 TRAFD1 -856673 sc-eQTL 7.69e-01 -0.0636 0.216 0.051 B_Activated L2
ENSG00000174437 ATP2A2 988109 sc-eQTL 2.75e-01 0.235 0.214 0.051 B_Activated L2
ENSG00000186298 PPP1CC 525926 sc-eQTL 2.26e-01 0.289 0.238 0.051 B_Activated L2
ENSG00000196510 ANAPC7 865135 sc-eQTL 7.13e-01 -0.0804 0.219 0.051 B_Activated L2
ENSG00000196850 PPTC7 685547 sc-eQTL 2.10e-01 -0.28 0.222 0.051 B_Activated L2
ENSG00000198270 TMEM116 -744320 sc-eQTL 9.53e-01 -0.0121 0.207 0.051 B_Activated L2
ENSG00000198324 PHETA1 -100256 sc-eQTL 8.47e-01 -0.0337 0.174 0.051 B_Activated L2
ENSG00000204842 ATXN2 -330811 sc-eQTL 2.68e-01 -0.241 0.217 0.051 B_Activated L2
ENSG00000204852 TCTN1 654838 sc-eQTL 6.45e-01 0.103 0.222 0.051 B_Activated L2
ENSG00000204856 FAM216A 800450 sc-eQTL 2.50e-01 -0.241 0.209 0.051 B_Activated L2
ENSG00000234608 MAPKAPK5-AS1 -574037 sc-eQTL 2.00e-01 -0.293 0.228 0.051 B_Activated L2
ENSG00000089022 MAPKAPK5 -573363 sc-eQTL 5.01e-01 0.181 0.267 0.052 PB L2
ENSG00000089234 BRAP -417091 sc-eQTL 7.76e-01 0.0672 0.236 0.052 PB L2
ENSG00000089248 ERP29 -744483 sc-eQTL 2.24e-01 0.174 0.142 0.052 PB L2
ENSG00000111229 ARPC3 818443 sc-eQTL 4.84e-01 -0.105 0.149 0.052 PB L2
ENSG00000111231 GPN3 799597 sc-eQTL 3.76e-01 0.194 0.218 0.052 PB L2
ENSG00000111237 VPS29 766754 sc-eQTL 2.26e-01 -0.226 0.186 0.052 PB L2
ENSG00000111252 SH2B3 -137083 sc-eQTL 5.13e-01 -0.166 0.254 0.052 PB L2
ENSG00000111271 ACAD10 -417191 sc-eQTL 6.88e-01 0.103 0.257 0.052 PB L2
ENSG00000111275 ALDH2 -498022 sc-eQTL 3.86e-01 -0.218 0.25 0.052 PB L2
ENSG00000111300 NAA25 -839931 sc-eQTL 6.92e-02 0.483 0.263 0.052 PB L2
ENSG00000122986 HVCN1 563915 sc-eQTL 3.80e-01 -0.13 0.148 0.052 PB L2
ENSG00000135148 TRAFD1 -856673 sc-eQTL 5.77e-01 0.153 0.273 0.052 PB L2
ENSG00000174437 ATP2A2 988109 sc-eQTL 5.04e-01 -0.112 0.167 0.052 PB L2
ENSG00000186298 PPP1CC 525926 sc-eQTL 8.30e-01 -0.0457 0.212 0.052 PB L2
ENSG00000196510 ANAPC7 865135 sc-eQTL 3.62e-01 -0.22 0.24 0.052 PB L2
ENSG00000196850 PPTC7 685547 sc-eQTL 7.96e-01 -0.0633 0.244 0.052 PB L2
ENSG00000198270 TMEM116 -744320 sc-eQTL 9.64e-01 -0.0123 0.273 0.052 PB L2
ENSG00000198324 PHETA1 -100256 sc-eQTL 5.74e-01 0.134 0.237 0.052 PB L2
ENSG00000204842 ATXN2 -330811 sc-eQTL 8.05e-01 -0.0672 0.272 0.052 PB L2
ENSG00000204852 TCTN1 654838 sc-eQTL 1.04e-01 -0.335 0.204 0.052 PB L2
ENSG00000204856 FAM216A 800450 sc-eQTL 4.35e-01 0.203 0.259 0.052 PB L2
ENSG00000234608 MAPKAPK5-AS1 -574037 sc-eQTL 7.40e-01 -0.0752 0.226 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -573363 eQTL 0.0161 0.0959 0.0398 0.0 0.0 0.0358
ENSG00000089248 ERP29 -744483 eQTL 0.121 -0.0541 0.0348 0.0016 0.0 0.0358
ENSG00000111275 ALDH2 -498022 pQTL 0.00597 0.182 0.0659 0.0 0.0 0.039
ENSG00000204852 TCTN1 654838 eQTL 2.79e-02 0.0876 0.0398 0.00144 0.0 0.0358
ENSG00000241680 RPL31P49 807877 eQTL 0.0947 -0.171 0.102 0.00113 0.0 0.0358
ENSG00000278993 AC002350.1 767251 eQTL 0.0089 0.199 0.076 0.00448 0.00131 0.0358

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -573363 3.77e-07 1.7e-07 6.41e-08 2.35e-07 9.82e-08 8.75e-08 2.4e-07 5.75e-08 1.59e-07 9.72e-08 1.61e-07 1.22e-07 2.38e-07 8.44e-08 5.69e-08 8.71e-08 4.25e-08 1.91e-07 7.29e-08 6.03e-08 1.18e-07 1.47e-07 1.69e-07 3.59e-08 2.17e-07 1.31e-07 1.22e-07 1.12e-07 1.37e-07 1.17e-07 1.21e-07 5.32e-08 3.8e-08 9.52e-08 5.41e-08 3.05e-08 6.04e-08 7.63e-08 5.95e-08 6.19e-08 3.64e-08 1.55e-07 3.18e-08 1.43e-08 4.36e-08 8.31e-09 8.98e-08 2.16e-09 4.72e-08
ENSG00000278993 AC002350.1 767251 2.8e-07 1.3e-07 4.91e-08 1.9e-07 9.25e-08 9.9e-08 1.61e-07 5.2e-08 1.45e-07 5.42e-08 1.57e-07 8.55e-08 1.47e-07 7.13e-08 6.04e-08 7.53e-08 4.17e-08 1.33e-07 5.97e-08 4.31e-08 1.19e-07 1.28e-07 1.45e-07 3.03e-08 1.46e-07 1.14e-07 1.07e-07 9.61e-08 1.12e-07 1.02e-07 9.7e-08 3.93e-08 4.02e-08 8.11e-08 5.99e-08 3.49e-08 5.61e-08 8.63e-08 6.71e-08 3.92e-08 5.53e-08 1.36e-07 5.22e-08 1.55e-08 3.81e-08 1.84e-08 1.22e-07 1.88e-09 5.01e-08