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Genes within 1Mb (chr12:111264775:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089022 MAPKAPK5 -577453 sc-eQTL 1.85e-01 0.341 0.256 0.055 gdT L2
ENSG00000089234 BRAP -421181 sc-eQTL 2.64e-01 0.289 0.258 0.055 gdT L2
ENSG00000089248 ERP29 -748573 sc-eQTL 2.07e-01 0.281 0.222 0.055 gdT L2
ENSG00000111229 ARPC3 814353 sc-eQTL 1.03e-01 -0.278 0.169 0.055 gdT L2
ENSG00000111231 GPN3 795507 sc-eQTL 7.58e-01 -0.0753 0.244 0.055 gdT L2
ENSG00000111237 VPS29 762664 sc-eQTL 9.22e-01 -0.0248 0.254 0.055 gdT L2
ENSG00000111252 SH2B3 -141173 sc-eQTL 7.91e-01 0.0633 0.239 0.055 gdT L2
ENSG00000111271 ACAD10 -421281 sc-eQTL 7.10e-01 0.0845 0.226 0.055 gdT L2
ENSG00000111300 NAA25 -844021 sc-eQTL 5.02e-01 -0.176 0.261 0.055 gdT L2
ENSG00000122986 HVCN1 559825 sc-eQTL 3.73e-01 -0.218 0.245 0.055 gdT L2
ENSG00000135148 TRAFD1 -860763 sc-eQTL 5.21e-01 -0.155 0.241 0.055 gdT L2
ENSG00000174437 ATP2A2 984019 sc-eQTL 7.51e-01 -0.0731 0.23 0.055 gdT L2
ENSG00000186298 PPP1CC 521836 sc-eQTL 9.44e-02 -0.437 0.259 0.055 gdT L2
ENSG00000196510 ANAPC7 861045 sc-eQTL 9.36e-01 0.0192 0.24 0.055 gdT L2
ENSG00000196850 PPTC7 681457 sc-eQTL 7.00e-01 -0.0919 0.238 0.055 gdT L2
ENSG00000198270 TMEM116 -748410 sc-eQTL 4.68e-01 0.169 0.232 0.055 gdT L2
ENSG00000204842 ATXN2 -334901 sc-eQTL 4.56e-01 0.18 0.24 0.055 gdT L2
ENSG00000204852 TCTN1 650748 sc-eQTL 5.81e-01 -0.138 0.248 0.055 gdT L2
ENSG00000204856 FAM216A 796360 sc-eQTL 6.57e-01 0.109 0.244 0.055 gdT L2
ENSG00000234608 MAPKAPK5-AS1 -578127 sc-eQTL 6.26e-01 0.119 0.244 0.055 gdT L2
ENSG00000089022 MAPKAPK5 -577453 sc-eQTL 7.45e-01 -0.0763 0.234 0.056 pDC L2
ENSG00000089234 BRAP -421181 sc-eQTL 1.63e-01 0.312 0.223 0.056 pDC L2
ENSG00000089248 ERP29 -748573 sc-eQTL 1.67e-01 0.19 0.136 0.056 pDC L2
ENSG00000111229 ARPC3 814353 sc-eQTL 2.24e-01 0.155 0.127 0.056 pDC L2
ENSG00000111231 GPN3 795507 sc-eQTL 3.33e-01 0.209 0.215 0.056 pDC L2
ENSG00000111237 VPS29 762664 sc-eQTL 2.95e-01 0.201 0.191 0.056 pDC L2
ENSG00000111249 CUX2 230610 sc-eQTL 6.01e-01 0.0775 0.148 0.056 pDC L2
ENSG00000111252 SH2B3 -141173 sc-eQTL 6.27e-01 0.0532 0.109 0.056 pDC L2
ENSG00000111271 ACAD10 -421281 sc-eQTL 8.55e-03 -0.602 0.226 0.056 pDC L2
ENSG00000111275 ALDH2 -502112 sc-eQTL 6.09e-01 0.0851 0.166 0.056 pDC L2
ENSG00000111300 NAA25 -844021 sc-eQTL 8.54e-01 -0.0374 0.203 0.056 pDC L2
ENSG00000122986 HVCN1 559825 sc-eQTL 6.15e-01 -0.0963 0.191 0.056 pDC L2
ENSG00000135148 TRAFD1 -860763 sc-eQTL 4.33e-01 -0.17 0.216 0.056 pDC L2
ENSG00000174437 ATP2A2 984019 sc-eQTL 7.16e-01 0.0781 0.214 0.056 pDC L2
ENSG00000186298 PPP1CC 521836 sc-eQTL 1.78e-01 -0.263 0.194 0.056 pDC L2
ENSG00000196510 ANAPC7 861045 sc-eQTL 6.37e-02 -0.389 0.208 0.056 pDC L2
ENSG00000196850 PPTC7 681457 sc-eQTL 7.08e-01 0.0775 0.207 0.056 pDC L2
ENSG00000198270 TMEM116 -748410 sc-eQTL 9.03e-01 -0.0256 0.209 0.056 pDC L2
ENSG00000198324 PHETA1 -104346 sc-eQTL 8.67e-01 0.0319 0.189 0.056 pDC L2
ENSG00000204842 ATXN2 -334901 sc-eQTL 3.76e-01 -0.197 0.222 0.056 pDC L2
ENSG00000204852 TCTN1 650748 sc-eQTL 5.20e-01 -0.139 0.215 0.056 pDC L2
ENSG00000204856 FAM216A 796360 sc-eQTL 3.51e-01 0.178 0.19 0.056 pDC L2
ENSG00000234608 MAPKAPK5-AS1 -578127 sc-eQTL 9.59e-01 0.0107 0.21 0.056 pDC L2
ENSG00000257595 LINC02356 -104486 sc-eQTL 6.89e-01 0.0666 0.166 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111300 NAA25 -844021 eQTL 0.00361 0.0754 0.0258 0.0 0.0 0.0564
ENSG00000186298 PPP1CC 521836 eQTL 3.25e-02 0.0552 0.0258 0.00137 0.0 0.0564
ENSG00000198270 TMEM116 -748410 eQTL 0.00908 0.0978 0.0374 0.0 0.0 0.0564
ENSG00000234608 MAPKAPK5-AS1 -578127 eQTL 0.000456 0.0986 0.028 0.0 0.0 0.0564

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000198270 TMEM116 -748410 2.67e-07 1.27e-07 4.48e-08 1.89e-07 9.25e-08 9.76e-08 1.53e-07 5.37e-08 1.45e-07 4.94e-08 1.52e-07 8.68e-08 1.53e-07 7.13e-08 6.02e-08 7.53e-08 3.93e-08 1.27e-07 5.75e-08 4.23e-08 1.08e-07 1.27e-07 1.44e-07 3.03e-08 1.55e-07 1.14e-07 1.07e-07 9.61e-08 1.16e-07 1.07e-07 9.92e-08 3.68e-08 3.35e-08 8.56e-08 6.34e-08 3.65e-08 5.29e-08 9.26e-08 6.54e-08 3.71e-08 5.13e-08 1.4e-07 4.52e-08 1.3e-08 4.7e-08 1.86e-08 1.19e-07 3.81e-09 4.79e-08
ENSG00000229186 \N -634488 2.95e-07 1.5e-07 5.35e-08 2.22e-07 9.87e-08 8.45e-08 1.81e-07 5.43e-08 1.47e-07 6.4e-08 1.62e-07 1.11e-07 1.95e-07 7.95e-08 5.98e-08 7.74e-08 4.18e-08 1.51e-07 6.75e-08 5.04e-08 1.22e-07 1.26e-07 1.58e-07 2.68e-08 1.85e-07 1.22e-07 1.18e-07 1.04e-07 1.26e-07 1.07e-07 1.06e-07 3.54e-08 4.02e-08 9.78e-08 3.02e-08 2.69e-08 5.35e-08 8.61e-08 6.71e-08 3.82e-08 5.28e-08 1.5e-07 5.2e-08 1.11e-08 3.41e-08 1.65e-08 1.18e-07 1.88e-09 5.04e-08