logo

Genes within 1Mb (chr12:111253804:G:GTT):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089022 MAPKAPK5 -588424 sc-eQTL 5.80e-01 0.121 0.218 0.056 B_Activated L2
ENSG00000089234 BRAP -432152 sc-eQTL 3.38e-01 0.209 0.217 0.056 B_Activated L2
ENSG00000089248 ERP29 -759544 sc-eQTL 8.08e-01 -0.0499 0.205 0.056 B_Activated L2
ENSG00000111229 ARPC3 803382 sc-eQTL 8.41e-01 -0.0317 0.158 0.056 B_Activated L2
ENSG00000111231 GPN3 784536 sc-eQTL 2.57e-01 0.224 0.197 0.056 B_Activated L2
ENSG00000111237 VPS29 751693 sc-eQTL 3.16e-01 -0.216 0.215 0.056 B_Activated L2
ENSG00000111252 SH2B3 -152144 sc-eQTL 9.27e-01 -0.0183 0.199 0.056 B_Activated L2
ENSG00000111271 ACAD10 -432252 sc-eQTL 5.48e-01 0.125 0.208 0.056 B_Activated L2
ENSG00000111275 ALDH2 -513083 sc-eQTL 3.50e-01 0.186 0.198 0.056 B_Activated L2
ENSG00000111300 NAA25 -854992 sc-eQTL 1.39e-02 0.553 0.222 0.056 B_Activated L2
ENSG00000122986 HVCN1 548854 sc-eQTL 6.86e-01 -0.0692 0.171 0.056 B_Activated L2
ENSG00000135148 TRAFD1 -871734 sc-eQTL 6.00e-01 -0.109 0.207 0.056 B_Activated L2
ENSG00000174437 ATP2A2 973048 sc-eQTL 3.94e-01 0.176 0.206 0.056 B_Activated L2
ENSG00000186298 PPP1CC 510865 sc-eQTL 1.96e-01 0.297 0.229 0.056 B_Activated L2
ENSG00000196510 ANAPC7 850074 sc-eQTL 5.21e-01 -0.135 0.21 0.056 B_Activated L2
ENSG00000196850 PPTC7 670486 sc-eQTL 1.50e-01 -0.308 0.213 0.056 B_Activated L2
ENSG00000198270 TMEM116 -759381 sc-eQTL 7.57e-01 -0.0615 0.199 0.056 B_Activated L2
ENSG00000198324 PHETA1 -115317 sc-eQTL 7.37e-01 -0.0563 0.167 0.056 B_Activated L2
ENSG00000204842 ATXN2 -345872 sc-eQTL 3.44e-01 -0.198 0.209 0.056 B_Activated L2
ENSG00000204852 TCTN1 639777 sc-eQTL 6.40e-01 0.0999 0.214 0.056 B_Activated L2
ENSG00000204856 FAM216A 785389 sc-eQTL 3.91e-01 -0.173 0.201 0.056 B_Activated L2
ENSG00000234608 MAPKAPK5-AS1 -589098 sc-eQTL 1.82e-01 -0.293 0.219 0.056 B_Activated L2
ENSG00000089022 MAPKAPK5 -588424 sc-eQTL 3.25e-01 -0.216 0.219 0.05 CD4_CTL L2
ENSG00000089234 BRAP -432152 sc-eQTL 8.54e-01 -0.0361 0.195 0.05 CD4_CTL L2
ENSG00000089248 ERP29 -759544 sc-eQTL 2.78e-01 -0.173 0.159 0.05 CD4_CTL L2
ENSG00000111229 ARPC3 803382 sc-eQTL 3.33e-02 0.285 0.133 0.05 CD4_CTL L2
ENSG00000111231 GPN3 784536 sc-eQTL 9.16e-01 -0.0214 0.203 0.05 CD4_CTL L2
ENSG00000111237 VPS29 751693 sc-eQTL 9.22e-01 -0.0195 0.2 0.05 CD4_CTL L2
ENSG00000111252 SH2B3 -152144 sc-eQTL 6.85e-01 -0.0837 0.206 0.05 CD4_CTL L2
ENSG00000111271 ACAD10 -432252 sc-eQTL 6.77e-01 0.0838 0.201 0.05 CD4_CTL L2
ENSG00000111300 NAA25 -854992 sc-eQTL 3.73e-01 -0.19 0.213 0.05 CD4_CTL L2
ENSG00000122986 HVCN1 548854 sc-eQTL 6.00e-01 -0.109 0.208 0.05 CD4_CTL L2
ENSG00000135148 TRAFD1 -871734 sc-eQTL 8.31e-01 -0.0458 0.215 0.05 CD4_CTL L2
ENSG00000174437 ATP2A2 973048 sc-eQTL 5.64e-02 -0.372 0.194 0.05 CD4_CTL L2
ENSG00000186298 PPP1CC 510865 sc-eQTL 9.67e-01 -0.00777 0.19 0.05 CD4_CTL L2
ENSG00000196510 ANAPC7 850074 sc-eQTL 1.12e-02 -0.516 0.202 0.05 CD4_CTL L2
ENSG00000196850 PPTC7 670486 sc-eQTL 9.17e-02 -0.342 0.202 0.05 CD4_CTL L2
ENSG00000198270 TMEM116 -759381 sc-eQTL 2.32e-01 -0.255 0.213 0.05 CD4_CTL L2
ENSG00000204842 ATXN2 -345872 sc-eQTL 4.77e-01 -0.134 0.189 0.05 CD4_CTL L2
ENSG00000204852 TCTN1 639777 sc-eQTL 9.94e-01 0.00151 0.204 0.05 CD4_CTL L2
ENSG00000204856 FAM216A 785389 sc-eQTL 4.13e-01 -0.162 0.197 0.05 CD4_CTL L2
ENSG00000234608 MAPKAPK5-AS1 -589098 sc-eQTL 9.02e-01 -0.0252 0.205 0.05 CD4_CTL L2
ENSG00000089022 MAPKAPK5 -588424 sc-eQTL 9.58e-01 -0.0109 0.209 0.051 CD8_TCM L2
ENSG00000089234 BRAP -432152 sc-eQTL 9.09e-01 -0.0244 0.214 0.051 CD8_TCM L2
ENSG00000089248 ERP29 -759544 sc-eQTL 8.41e-03 0.509 0.191 0.051 CD8_TCM L2
ENSG00000111229 ARPC3 803382 sc-eQTL 1.34e-01 -0.229 0.152 0.051 CD8_TCM L2
ENSG00000111231 GPN3 784536 sc-eQTL 9.45e-01 0.0146 0.212 0.051 CD8_TCM L2
ENSG00000111237 VPS29 751693 sc-eQTL 7.80e-01 -0.0625 0.223 0.051 CD8_TCM L2
ENSG00000111252 SH2B3 -152144 sc-eQTL 3.22e-01 0.204 0.205 0.051 CD8_TCM L2
ENSG00000111271 ACAD10 -432252 sc-eQTL 6.42e-01 -0.103 0.222 0.051 CD8_TCM L2
ENSG00000111300 NAA25 -854992 sc-eQTL 4.34e-01 -0.161 0.205 0.051 CD8_TCM L2
ENSG00000122986 HVCN1 548854 sc-eQTL 2.96e-01 -0.206 0.197 0.051 CD8_TCM L2
ENSG00000135148 TRAFD1 -871734 sc-eQTL 5.92e-01 0.115 0.213 0.051 CD8_TCM L2
ENSG00000174437 ATP2A2 973048 sc-eQTL 1.48e-01 0.271 0.187 0.051 CD8_TCM L2
ENSG00000186298 PPP1CC 510865 sc-eQTL 8.37e-01 0.0423 0.205 0.051 CD8_TCM L2
ENSG00000196510 ANAPC7 850074 sc-eQTL 3.61e-03 0.625 0.212 0.051 CD8_TCM L2
ENSG00000196850 PPTC7 670486 sc-eQTL 4.20e-01 0.162 0.2 0.051 CD8_TCM L2
ENSG00000198270 TMEM116 -759381 sc-eQTL 7.73e-01 -0.064 0.221 0.051 CD8_TCM L2
ENSG00000204842 ATXN2 -345872 sc-eQTL 7.62e-01 -0.0612 0.201 0.051 CD8_TCM L2
ENSG00000204852 TCTN1 639777 sc-eQTL 3.06e-01 -0.218 0.212 0.051 CD8_TCM L2
ENSG00000204856 FAM216A 785389 sc-eQTL 5.06e-01 0.138 0.207 0.051 CD8_TCM L2
ENSG00000234608 MAPKAPK5-AS1 -589098 sc-eQTL 5.05e-01 -0.134 0.2 0.051 CD8_TCM L2
ENSG00000089022 MAPKAPK5 -588424 sc-eQTL 9.48e-01 0.0166 0.255 0.059 PB L2
ENSG00000089234 BRAP -432152 sc-eQTL 7.99e-01 -0.0572 0.224 0.059 PB L2
ENSG00000089248 ERP29 -759544 sc-eQTL 1.62e-01 0.19 0.135 0.059 PB L2
ENSG00000111229 ARPC3 803382 sc-eQTL 4.87e-01 -0.0989 0.142 0.059 PB L2
ENSG00000111231 GPN3 784536 sc-eQTL 3.29e-01 0.203 0.207 0.059 PB L2
ENSG00000111237 VPS29 751693 sc-eQTL 5.17e-01 -0.115 0.177 0.059 PB L2
ENSG00000111252 SH2B3 -152144 sc-eQTL 8.35e-01 -0.0504 0.242 0.059 PB L2
ENSG00000111271 ACAD10 -432252 sc-eQTL 9.87e-01 -0.00398 0.245 0.059 PB L2
ENSG00000111275 ALDH2 -513083 sc-eQTL 3.35e-01 -0.23 0.238 0.059 PB L2
ENSG00000111300 NAA25 -854992 sc-eQTL 2.59e-01 0.287 0.253 0.059 PB L2
ENSG00000122986 HVCN1 548854 sc-eQTL 3.05e-01 -0.144 0.14 0.059 PB L2
ENSG00000135148 TRAFD1 -871734 sc-eQTL 7.38e-01 0.0874 0.26 0.059 PB L2
ENSG00000174437 ATP2A2 973048 sc-eQTL 4.15e-01 -0.13 0.158 0.059 PB L2
ENSG00000186298 PPP1CC 510865 sc-eQTL 2.80e-01 -0.218 0.201 0.059 PB L2
ENSG00000196510 ANAPC7 850074 sc-eQTL 3.78e-01 -0.203 0.229 0.059 PB L2
ENSG00000196850 PPTC7 670486 sc-eQTL 6.19e-01 0.116 0.232 0.059 PB L2
ENSG00000198270 TMEM116 -759381 sc-eQTL 4.91e-01 -0.179 0.26 0.059 PB L2
ENSG00000198324 PHETA1 -115317 sc-eQTL 5.08e-01 0.15 0.226 0.059 PB L2
ENSG00000204842 ATXN2 -345872 sc-eQTL 3.20e-01 -0.257 0.257 0.059 PB L2
ENSG00000204852 TCTN1 639777 sc-eQTL 6.74e-02 -0.358 0.194 0.059 PB L2
ENSG00000204856 FAM216A 785389 sc-eQTL 5.07e-01 0.164 0.247 0.059 PB L2
ENSG00000234608 MAPKAPK5-AS1 -589098 sc-eQTL 8.06e-01 -0.0529 0.215 0.059 PB L2
ENSG00000089022 MAPKAPK5 -588424 sc-eQTL 4.44e-01 0.19 0.248 0.052 gdT L2
ENSG00000089234 BRAP -432152 sc-eQTL 3.15e-01 0.251 0.249 0.052 gdT L2
ENSG00000089248 ERP29 -759544 sc-eQTL 5.11e-01 -0.142 0.215 0.052 gdT L2
ENSG00000111229 ARPC3 803382 sc-eQTL 4.11e-01 0.136 0.164 0.052 gdT L2
ENSG00000111231 GPN3 784536 sc-eQTL 4.58e-01 0.175 0.235 0.052 gdT L2
ENSG00000111237 VPS29 751693 sc-eQTL 9.21e-01 0.0244 0.245 0.052 gdT L2
ENSG00000111252 SH2B3 -152144 sc-eQTL 7.48e-01 0.074 0.23 0.052 gdT L2
ENSG00000111271 ACAD10 -432252 sc-eQTL 9.25e-01 0.0207 0.219 0.052 gdT L2
ENSG00000111300 NAA25 -854992 sc-eQTL 2.01e-01 0.322 0.251 0.052 gdT L2
ENSG00000122986 HVCN1 548854 sc-eQTL 5.92e-01 -0.127 0.236 0.052 gdT L2
ENSG00000135148 TRAFD1 -871734 sc-eQTL 8.42e-01 0.0463 0.233 0.052 gdT L2
ENSG00000174437 ATP2A2 973048 sc-eQTL 2.13e-01 -0.276 0.221 0.052 gdT L2
ENSG00000186298 PPP1CC 510865 sc-eQTL 4.98e-01 -0.172 0.253 0.052 gdT L2
ENSG00000196510 ANAPC7 850074 sc-eQTL 7.01e-01 0.0894 0.232 0.052 gdT L2
ENSG00000196850 PPTC7 670486 sc-eQTL 1.62e-02 0.549 0.225 0.052 gdT L2
ENSG00000198270 TMEM116 -759381 sc-eQTL 8.58e-01 -0.0401 0.224 0.052 gdT L2
ENSG00000204842 ATXN2 -345872 sc-eQTL 1.29e-01 0.352 0.231 0.052 gdT L2
ENSG00000204852 TCTN1 639777 sc-eQTL 9.98e-01 0.000709 0.24 0.052 gdT L2
ENSG00000204856 FAM216A 785389 sc-eQTL 6.77e-01 -0.0983 0.235 0.052 gdT L2
ENSG00000234608 MAPKAPK5-AS1 -589098 sc-eQTL 5.70e-01 -0.134 0.235 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -588424 eQTL 0.0161 0.0852 0.0353 0.0 0.0 0.0461
ENSG00000089248 ERP29 -759544 eQTL 0.0555 -0.0592 0.0309 0.00264 0.0 0.0461
ENSG00000111275 ALDH2 -513083 pQTL 0.000327 0.214 0.0593 0.0 0.0 0.0495
ENSG00000204852 TCTN1 639777 eQTL 4.62e-02 0.0705 0.0353 0.0012 0.0 0.0461
ENSG00000234608 MAPKAPK5-AS1 -589098 eQTL 0.0365 0.0648 0.0309 0.0 0.0 0.0461
ENSG00000241680 RPL31P49 792816 eQTL 0.0577 -0.172 0.0906 0.00132 0.0 0.0461
ENSG00000278993 AC002350.1 752190 eQTL 0.0164 0.162 0.0675 0.00327 0.0 0.0461

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina