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Genes within 1Mb (chr12:111235372:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089022 MAPKAPK5 -606856 sc-eQTL 1.92e-01 0.28 0.214 0.051 B_Activated L2
ENSG00000089234 BRAP -450584 sc-eQTL 2.86e-02 0.467 0.212 0.051 B_Activated L2
ENSG00000089248 ERP29 -777976 sc-eQTL 7.92e-01 -0.0534 0.202 0.051 B_Activated L2
ENSG00000111229 ARPC3 784950 sc-eQTL 5.39e-01 -0.0956 0.155 0.051 B_Activated L2
ENSG00000111231 GPN3 766104 sc-eQTL 2.17e-02 0.446 0.192 0.051 B_Activated L2
ENSG00000111237 VPS29 733261 sc-eQTL 3.10e-01 0.216 0.212 0.051 B_Activated L2
ENSG00000111252 SH2B3 -170576 sc-eQTL 6.75e-01 -0.0823 0.196 0.051 B_Activated L2
ENSG00000111271 ACAD10 -450684 sc-eQTL 4.62e-01 0.151 0.205 0.051 B_Activated L2
ENSG00000111275 ALDH2 -531515 sc-eQTL 8.29e-01 0.0425 0.196 0.051 B_Activated L2
ENSG00000111300 NAA25 -873424 sc-eQTL 6.26e-02 0.414 0.221 0.051 B_Activated L2
ENSG00000122986 HVCN1 530422 sc-eQTL 6.32e-02 0.311 0.167 0.051 B_Activated L2
ENSG00000135148 TRAFD1 -890166 sc-eQTL 7.13e-01 -0.0753 0.204 0.051 B_Activated L2
ENSG00000174437 ATP2A2 954616 sc-eQTL 1.93e-01 -0.265 0.203 0.051 B_Activated L2
ENSG00000186298 PPP1CC 492433 sc-eQTL 1.00e+00 -0.000113 0.226 0.051 B_Activated L2
ENSG00000196510 ANAPC7 831642 sc-eQTL 8.73e-01 0.0331 0.207 0.051 B_Activated L2
ENSG00000196850 PPTC7 652054 sc-eQTL 3.40e-01 -0.201 0.211 0.051 B_Activated L2
ENSG00000198270 TMEM116 -777813 sc-eQTL 8.81e-01 -0.0295 0.196 0.051 B_Activated L2
ENSG00000198324 PHETA1 -133749 sc-eQTL 7.88e-01 0.0444 0.165 0.051 B_Activated L2
ENSG00000204842 ATXN2 -364304 sc-eQTL 9.83e-01 0.00438 0.206 0.051 B_Activated L2
ENSG00000204852 TCTN1 621345 sc-eQTL 9.97e-01 -0.00088 0.211 0.051 B_Activated L2
ENSG00000204856 FAM216A 766957 sc-eQTL 2.78e-01 0.215 0.198 0.051 B_Activated L2
ENSG00000234608 MAPKAPK5-AS1 -607530 sc-eQTL 9.94e-01 0.00174 0.217 0.051 B_Activated L2
ENSG00000089022 MAPKAPK5 -606856 sc-eQTL 1.63e-01 0.333 0.237 0.056 PB L2
ENSG00000089234 BRAP -450584 sc-eQTL 7.53e-01 0.0665 0.211 0.056 PB L2
ENSG00000089248 ERP29 -777976 sc-eQTL 9.69e-01 -0.00504 0.128 0.056 PB L2
ENSG00000111229 ARPC3 784950 sc-eQTL 9.09e-01 -0.0152 0.134 0.056 PB L2
ENSG00000111231 GPN3 766104 sc-eQTL 7.73e-01 -0.0566 0.195 0.056 PB L2
ENSG00000111237 VPS29 733261 sc-eQTL 7.71e-01 -0.0486 0.167 0.056 PB L2
ENSG00000111252 SH2B3 -170576 sc-eQTL 4.95e-01 -0.155 0.227 0.056 PB L2
ENSG00000111271 ACAD10 -450684 sc-eQTL 3.93e-01 -0.196 0.229 0.056 PB L2
ENSG00000111275 ALDH2 -531515 sc-eQTL 8.08e-01 0.0546 0.225 0.056 PB L2
ENSG00000111300 NAA25 -873424 sc-eQTL 4.97e-01 0.162 0.238 0.056 PB L2
ENSG00000122986 HVCN1 530422 sc-eQTL 8.13e-01 -0.0314 0.132 0.056 PB L2
ENSG00000135148 TRAFD1 -890166 sc-eQTL 9.18e-01 -0.0253 0.245 0.056 PB L2
ENSG00000174437 ATP2A2 954616 sc-eQTL 5.64e-01 0.0862 0.149 0.056 PB L2
ENSG00000186298 PPP1CC 492433 sc-eQTL 2.55e-02 0.42 0.185 0.056 PB L2
ENSG00000196510 ANAPC7 831642 sc-eQTL 4.95e-01 -0.147 0.215 0.056 PB L2
ENSG00000196850 PPTC7 652054 sc-eQTL 4.42e-01 0.168 0.218 0.056 PB L2
ENSG00000198270 TMEM116 -777813 sc-eQTL 5.14e-02 0.473 0.24 0.056 PB L2
ENSG00000198324 PHETA1 -133749 sc-eQTL 8.66e-01 -0.0361 0.212 0.056 PB L2
ENSG00000204842 ATXN2 -364304 sc-eQTL 8.53e-01 -0.0452 0.243 0.056 PB L2
ENSG00000204852 TCTN1 621345 sc-eQTL 6.78e-01 0.0768 0.185 0.056 PB L2
ENSG00000204856 FAM216A 766957 sc-eQTL 2.03e-01 0.295 0.23 0.056 PB L2
ENSG00000234608 MAPKAPK5-AS1 -607530 sc-eQTL 1.52e-01 0.289 0.2 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -606856 eQTL 0.0198 0.0944 0.0405 0.0 0.0 0.0339
ENSG00000111275 ALDH2 -531515 eQTL 0.187 -0.06 0.0455 0.00155 0.0 0.0339

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -606856 2.76e-07 1.51e-07 7e-08 2.66e-07 9.79e-08 8.21e-08 2.24e-07 5.48e-08 1.98e-07 1.05e-07 1.69e-07 1.22e-07 4.54e-07 8.55e-08 5.97e-08 1.01e-07 4.31e-08 2.04e-07 7.16e-08 5.33e-08 1.18e-07 1.42e-07 1.69e-07 3.17e-08 3.14e-07 1.31e-07 1.29e-07 1.26e-07 1.32e-07 2.1e-07 1.35e-07 3.99e-08 3.68e-08 1.21e-07 4.04e-08 4.6e-08 3.7e-08 8.89e-08 6.81e-08 7.04e-08 3.92e-08 1.59e-07 2.16e-08 1.1e-08 5.7e-08 1.05e-08 9.96e-08 1.77e-08 4.98e-08
ENSG00000204856 \N 766591 2.64e-07 1.25e-07 5.14e-08 2.05e-07 8.92e-08 9.61e-08 1.49e-07 5.49e-08 1.45e-07 5.42e-08 1.62e-07 8.59e-08 1.95e-07 7.37e-08 6.17e-08 7.49e-08 3.94e-08 1.27e-07 5.39e-08 4.42e-08 1.13e-07 1.23e-07 1.44e-07 4.16e-08 1.65e-07 1.14e-07 1.07e-07 9.65e-08 1.08e-07 1.03e-07 1.02e-07 3.98e-08 3.28e-08 9.76e-08 8.38e-08 3.2e-08 5.03e-08 9.61e-08 5.95e-08 3.71e-08 3.27e-08 1.33e-07 4.7e-08 1.54e-08 8.16e-08 1.87e-08 1.24e-07 2.1e-09 4.79e-08