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Genes within 1Mb (chr12:111230598:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089022 MAPKAPK5 -611630 sc-eQTL 1.92e-01 0.28 0.214 0.051 B_Activated L2
ENSG00000089234 BRAP -455358 sc-eQTL 2.86e-02 0.467 0.212 0.051 B_Activated L2
ENSG00000089248 ERP29 -782750 sc-eQTL 7.92e-01 -0.0534 0.202 0.051 B_Activated L2
ENSG00000111229 ARPC3 780176 sc-eQTL 5.39e-01 -0.0956 0.155 0.051 B_Activated L2
ENSG00000111231 GPN3 761330 sc-eQTL 2.17e-02 0.446 0.192 0.051 B_Activated L2
ENSG00000111237 VPS29 728487 sc-eQTL 3.10e-01 0.216 0.212 0.051 B_Activated L2
ENSG00000111252 SH2B3 -175350 sc-eQTL 6.75e-01 -0.0823 0.196 0.051 B_Activated L2
ENSG00000111271 ACAD10 -455458 sc-eQTL 4.62e-01 0.151 0.205 0.051 B_Activated L2
ENSG00000111275 ALDH2 -536289 sc-eQTL 8.29e-01 0.0425 0.196 0.051 B_Activated L2
ENSG00000111300 NAA25 -878198 sc-eQTL 6.26e-02 0.414 0.221 0.051 B_Activated L2
ENSG00000122986 HVCN1 525648 sc-eQTL 6.32e-02 0.311 0.167 0.051 B_Activated L2
ENSG00000135148 TRAFD1 -894940 sc-eQTL 7.13e-01 -0.0753 0.204 0.051 B_Activated L2
ENSG00000174437 ATP2A2 949842 sc-eQTL 1.93e-01 -0.265 0.203 0.051 B_Activated L2
ENSG00000186298 PPP1CC 487659 sc-eQTL 1.00e+00 -0.000113 0.226 0.051 B_Activated L2
ENSG00000196510 ANAPC7 826868 sc-eQTL 8.73e-01 0.0331 0.207 0.051 B_Activated L2
ENSG00000196850 PPTC7 647280 sc-eQTL 3.40e-01 -0.201 0.211 0.051 B_Activated L2
ENSG00000198270 TMEM116 -782587 sc-eQTL 8.81e-01 -0.0295 0.196 0.051 B_Activated L2
ENSG00000198324 PHETA1 -138523 sc-eQTL 7.88e-01 0.0444 0.165 0.051 B_Activated L2
ENSG00000204842 ATXN2 -369078 sc-eQTL 9.83e-01 0.00438 0.206 0.051 B_Activated L2
ENSG00000204852 TCTN1 616571 sc-eQTL 9.97e-01 -0.00088 0.211 0.051 B_Activated L2
ENSG00000204856 FAM216A 762183 sc-eQTL 2.78e-01 0.215 0.198 0.051 B_Activated L2
ENSG00000234608 MAPKAPK5-AS1 -612304 sc-eQTL 9.94e-01 0.00174 0.217 0.051 B_Activated L2
ENSG00000089022 MAPKAPK5 -611630 sc-eQTL 1.63e-01 0.333 0.237 0.056 PB L2
ENSG00000089234 BRAP -455358 sc-eQTL 7.53e-01 0.0665 0.211 0.056 PB L2
ENSG00000089248 ERP29 -782750 sc-eQTL 9.69e-01 -0.00504 0.128 0.056 PB L2
ENSG00000111229 ARPC3 780176 sc-eQTL 9.09e-01 -0.0152 0.134 0.056 PB L2
ENSG00000111231 GPN3 761330 sc-eQTL 7.73e-01 -0.0566 0.195 0.056 PB L2
ENSG00000111237 VPS29 728487 sc-eQTL 7.71e-01 -0.0486 0.167 0.056 PB L2
ENSG00000111252 SH2B3 -175350 sc-eQTL 4.95e-01 -0.155 0.227 0.056 PB L2
ENSG00000111271 ACAD10 -455458 sc-eQTL 3.93e-01 -0.196 0.229 0.056 PB L2
ENSG00000111275 ALDH2 -536289 sc-eQTL 8.08e-01 0.0546 0.225 0.056 PB L2
ENSG00000111300 NAA25 -878198 sc-eQTL 4.97e-01 0.162 0.238 0.056 PB L2
ENSG00000122986 HVCN1 525648 sc-eQTL 8.13e-01 -0.0314 0.132 0.056 PB L2
ENSG00000135148 TRAFD1 -894940 sc-eQTL 9.18e-01 -0.0253 0.245 0.056 PB L2
ENSG00000174437 ATP2A2 949842 sc-eQTL 5.64e-01 0.0862 0.149 0.056 PB L2
ENSG00000186298 PPP1CC 487659 sc-eQTL 2.55e-02 0.42 0.185 0.056 PB L2
ENSG00000196510 ANAPC7 826868 sc-eQTL 4.95e-01 -0.147 0.215 0.056 PB L2
ENSG00000196850 PPTC7 647280 sc-eQTL 4.42e-01 0.168 0.218 0.056 PB L2
ENSG00000198270 TMEM116 -782587 sc-eQTL 5.14e-02 0.473 0.24 0.056 PB L2
ENSG00000198324 PHETA1 -138523 sc-eQTL 8.66e-01 -0.0361 0.212 0.056 PB L2
ENSG00000204842 ATXN2 -369078 sc-eQTL 8.53e-01 -0.0452 0.243 0.056 PB L2
ENSG00000204852 TCTN1 616571 sc-eQTL 6.78e-01 0.0768 0.185 0.056 PB L2
ENSG00000204856 FAM216A 762183 sc-eQTL 2.03e-01 0.295 0.23 0.056 PB L2
ENSG00000234608 MAPKAPK5-AS1 -612304 sc-eQTL 1.52e-01 0.289 0.2 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -611630 eQTL 0.0198 0.0944 0.0405 0.0 0.0 0.0339
ENSG00000111275 ALDH2 -536289 eQTL 0.187 -0.06 0.0455 0.00155 0.0 0.0339

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -611630 3.27e-07 1.59e-07 6.45e-08 2.26e-07 1.07e-07 8.4e-08 2.4e-07 5.84e-08 1.85e-07 1.05e-07 1.76e-07 1.48e-07 2.38e-07 8.07e-08 6.27e-08 9.6e-08 5.27e-08 2.04e-07 7.36e-08 6.03e-08 1.24e-07 1.76e-07 1.69e-07 4.17e-08 2.17e-07 1.51e-07 1.29e-07 1.17e-07 1.39e-07 1.39e-07 1.26e-07 4.93e-08 3.8e-08 9.3e-08 5.16e-08 3.11e-08 3.91e-08 7.25e-08 6.29e-08 6.31e-08 5.1e-08 1.55e-07 3.13e-08 1.11e-08 3.34e-08 6.68e-09 7.52e-08 2.2e-09 4.55e-08
ENSG00000204856 \N 761817 2.77e-07 1.34e-07 5.64e-08 1.9e-07 9.87e-08 8.45e-08 1.67e-07 5.75e-08 1.45e-07 6.4e-08 1.57e-07 1.11e-07 1.59e-07 7.37e-08 5.98e-08 7.23e-08 4.24e-08 1.44e-07 6.75e-08 4.89e-08 1.26e-07 1.25e-07 1.5e-07 2.87e-08 1.63e-07 1.22e-07 1.18e-07 9.92e-08 1.22e-07 1.03e-07 1.06e-07 3.59e-08 3.51e-08 8.72e-08 3.63e-08 3.14e-08 5.59e-08 8.68e-08 6.71e-08 3.82e-08 5.28e-08 1.46e-07 5.39e-08 1.07e-08 3.81e-08 1.92e-08 1e-07 1.9e-09 4.82e-08