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Genes within 1Mb (chr12:111211822:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089022 MAPKAPK5 -630406 sc-eQTL 4.07e-01 0.198 0.238 0.052 PB L2
ENSG00000089234 BRAP -474134 sc-eQTL 9.39e-01 -0.0162 0.21 0.052 PB L2
ENSG00000089248 ERP29 -801526 sc-eQTL 9.33e-01 -0.0108 0.128 0.052 PB L2
ENSG00000111229 ARPC3 761400 sc-eQTL 9.84e-01 0.00268 0.133 0.052 PB L2
ENSG00000111231 GPN3 742554 sc-eQTL 8.99e-01 -0.0249 0.195 0.052 PB L2
ENSG00000111237 VPS29 709711 sc-eQTL 5.35e-01 0.103 0.166 0.052 PB L2
ENSG00000111252 SH2B3 -194126 sc-eQTL 6.32e-01 -0.109 0.226 0.052 PB L2
ENSG00000111271 ACAD10 -474234 sc-eQTL 2.14e-01 -0.284 0.228 0.052 PB L2
ENSG00000111275 ALDH2 -555065 sc-eQTL 6.77e-01 -0.0935 0.224 0.052 PB L2
ENSG00000111300 NAA25 -896974 sc-eQTL 9.22e-01 0.0234 0.238 0.052 PB L2
ENSG00000122986 HVCN1 506872 sc-eQTL 8.72e-01 -0.0214 0.132 0.052 PB L2
ENSG00000135148 TRAFD1 -913716 sc-eQTL 9.38e-01 0.0189 0.244 0.052 PB L2
ENSG00000174437 ATP2A2 931066 sc-eQTL 5.04e-01 0.0995 0.149 0.052 PB L2
ENSG00000186298 PPP1CC 468883 sc-eQTL 1.81e-01 0.252 0.188 0.052 PB L2
ENSG00000196510 ANAPC7 808092 sc-eQTL 8.09e-01 -0.0522 0.215 0.052 PB L2
ENSG00000196850 PPTC7 628504 sc-eQTL 4.07e-01 0.181 0.217 0.052 PB L2
ENSG00000198270 TMEM116 -801363 sc-eQTL 1.89e-01 0.32 0.242 0.052 PB L2
ENSG00000198324 PHETA1 -157299 sc-eQTL 3.01e-01 -0.219 0.211 0.052 PB L2
ENSG00000204842 ATXN2 -387854 sc-eQTL 6.77e-01 -0.101 0.242 0.052 PB L2
ENSG00000204852 TCTN1 597795 sc-eQTL 5.23e-01 0.118 0.184 0.052 PB L2
ENSG00000204856 FAM216A 743407 sc-eQTL 6.94e-01 0.0912 0.231 0.052 PB L2
ENSG00000234608 MAPKAPK5-AS1 -631080 sc-eQTL 7.28e-02 0.36 0.199 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089248 ERP29 -801526 eQTL 0.0208 -0.0748 0.0323 0.00164 0.0 0.0388
ENSG00000111231 GPN3 742554 eQTL 0.0322 -0.114 0.0533 0.0 0.0 0.0388
ENSG00000111252 SH2B3 -194126 pQTL 0.018 -0.0881 0.0372 0.0 0.0 0.0376
ENSG00000198270 TMEM116 -801363 eQTL 0.0391 0.0889 0.043 0.0 0.0 0.0388
ENSG00000234608 MAPKAPK5-AS1 -631080 eQTL 0.408 -0.0268 0.0324 0.00114 0.0 0.0388

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina