Genes within 1Mb (chr12:110847217:G:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111229 ARPC3 396880 eQTL 2.37e-03 0.0257 0.00842 0.0 0.0 0.288
ENSG00000111231 GPN3 377949 eQTL 1.39e-13 0.17 0.0226 0.0 0.0 0.288
ENSG00000111237 VPS29 345100 eQTL 1.70e-03 0.0397 0.0126 0.0 0.0 0.288
ENSG00000111249 CUX2 -186948 eQTL 3.61e-02 0.0568 0.0271 0.00192 0.0 0.288
ENSG00000111275 ALDH2 -919670 pQTL 1.01e-01 -0.0456 0.0278 0.001 0.0 0.298
ENSG00000111275 ALDH2 -919670 eQTL 1.09e-02 -0.046 0.018 0.0 0.0 0.288
ENSG00000139437 TCHP 946943 eQTL 1.50e-02 -0.0423 0.0173 0.0 0.0 0.288
ENSG00000174456 C12orf76 773583 eQTL 1.74e-02 0.0512 0.0215 0.0 0.0 0.288
ENSG00000196850 PPTC7 263899 eQTL 4.51e-02 -0.0233 0.0116 0.0 0.0 0.288
ENSG00000204852 TCTN1 233190 eQTL 2.15e-03 0.0494 0.016 0.0 0.0 0.288
ENSG00000204856 FAM216A 378436 eQTL 4.83e-03 0.0623 0.0221 0.0 0.0 0.288


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111229 ARPC3 396880 8.48e-07 9.09e-07 1.22e-07 3.1e-07 1.06e-07 2.46e-07 6.33e-07 1.48e-07 4.74e-07 1.7e-07 1.03e-06 4.31e-07 1.49e-06 2.57e-07 4.53e-07 2.85e-07 5.64e-07 4.07e-07 5.83e-07 4.68e-07 2.57e-07 7.26e-07 4e-07 2.7e-07 1.38e-06 2.7e-07 2.58e-07 4.4e-07 3.58e-07 8.43e-07 3.95e-07 6.37e-08 5.75e-08 4.91e-07 3.05e-07 1.66e-07 9.14e-07 9.33e-08 5.07e-07 2.28e-08 2.84e-07 3.26e-07 4.14e-07 1.31e-07 8.01e-08 1.29e-08 8.24e-08 4.41e-08 4.68e-08
ENSG00000111231 GPN3 377949 1.04e-06 9.39e-07 1.58e-07 3.89e-07 1.11e-07 3.08e-07 7.22e-07 1.78e-07 6.53e-07 2.16e-07 1.09e-06 5.22e-07 1.59e-06 3e-07 4.48e-07 3.79e-07 7.22e-07 4.25e-07 8.13e-07 6.61e-07 3.39e-07 9.58e-07 4.59e-07 3.29e-07 1.64e-06 2.64e-07 3.16e-07 5.29e-07 4.39e-07 9.57e-07 4.55e-07 4.21e-08 1.18e-07 6.68e-07 3.38e-07 2.15e-07 9.28e-07 1.02e-07 6.97e-07 8.72e-09 2.56e-07 4.35e-07 5.93e-07 1.66e-07 9.95e-08 1.52e-08 1.26e-07 8.34e-08 5.58e-08
ENSG00000139433 \N 966676 2.66e-07 1.1e-07 3.44e-08 1.7e-07 1.02e-07 9.13e-08 1.39e-07 5.21e-08 1.36e-07 4.23e-08 1.63e-07 7.58e-08 1.27e-07 6.21e-08 5.14e-08 7.87e-08 4.94e-08 1.06e-07 5.19e-08 3.74e-08 1.06e-07 1.3e-07 1.29e-07 4.98e-08 1.32e-07 1.09e-07 1.13e-07 8.71e-08 1.05e-07 1.11e-07 9.75e-08 3.59e-08 2.74e-08 8.25e-08 9.41e-08 4.12e-08 5.45e-08 9.06e-08 6.37e-08 3.59e-08 4.18e-08 1.4e-07 3.99e-08 3.26e-08 1.09e-07 1.78e-08 1.44e-07 4.6e-09 4.61e-08
ENSG00000139437 TCHP 946943 2.66e-07 1.11e-07 3.44e-08 1.7e-07 1.02e-07 9.13e-08 1.42e-07 5.21e-08 1.37e-07 4.23e-08 1.63e-07 7.58e-08 1.27e-07 6.21e-08 5.44e-08 7.87e-08 4.94e-08 1.07e-07 5.19e-08 3.74e-08 1.06e-07 1.3e-07 1.29e-07 4.98e-08 1.29e-07 1.09e-07 1.13e-07 8.71e-08 1.03e-07 1.09e-07 9.75e-08 3.52e-08 2.74e-08 8.25e-08 9.27e-08 4.12e-08 5.7e-08 9.06e-08 6.59e-08 3.59e-08 4.36e-08 1.4e-07 4.14e-08 2.85e-08 1.09e-07 1.78e-08 1.44e-07 4.5e-09 4.61e-08
ENSG00000204856 FAM216A 378436 1.04e-06 9.39e-07 1.63e-07 3.89e-07 1.11e-07 3.08e-07 7.25e-07 1.78e-07 6.53e-07 2.14e-07 1.09e-06 5.22e-07 1.59e-06 2.88e-07 4.35e-07 3.68e-07 7.22e-07 4.25e-07 7.7e-07 6.68e-07 3.39e-07 9.58e-07 4.59e-07 3.29e-07 1.59e-06 2.64e-07 3.16e-07 5.29e-07 4.39e-07 9.57e-07 4.61e-07 3.34e-08 1.18e-07 6.68e-07 3.38e-07 2.15e-07 9.46e-07 1.02e-07 6.79e-07 8.66e-09 2.69e-07 4.35e-07 5.58e-07 1.74e-07 9.95e-08 1.52e-08 1.18e-07 8.34e-08 5.58e-08
ENSG00000241413 \N 980708 2.6e-07 1.1e-07 3.28e-08 1.7e-07 1.02e-07 9.13e-08 1.39e-07 5.21e-08 1.36e-07 4.23e-08 1.63e-07 7.58e-08 1.27e-07 6.21e-08 5.14e-08 7.87e-08 5.1e-08 1.06e-07 5.2e-08 3.74e-08 1.06e-07 1.3e-07 1.29e-07 4.99e-08 1.32e-07 1.09e-07 1.13e-07 8.71e-08 1.05e-07 1.11e-07 9.75e-08 3.59e-08 2.74e-08 8.3e-08 9.41e-08 4.12e-08 5.29e-08 8.78e-08 6.55e-08 3.64e-08 3.91e-08 1.4e-07 4.04e-08 3.6e-08 1.09e-07 1.78e-08 1.44e-07 4.6e-09 4.72e-08