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Genes within 1Mb (chr12:109695122:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000076248 UNG 597548 sc-eQTL 1.30e-01 -0.293 0.193 0.949 B_Activated L2
ENSG00000076513 ANKRD13A -304064 sc-eQTL 4.61e-01 0.139 0.188 0.949 B_Activated L2
ENSG00000076555 ACACB 578527 sc-eQTL 8.60e-01 -0.0307 0.174 0.949 B_Activated L2
ENSG00000084112 SSH1 837532 sc-eQTL 7.41e-01 -0.0657 0.199 0.949 B_Activated L2
ENSG00000110880 CORO1C 963526 sc-eQTL 5.24e-01 -0.138 0.217 0.949 B_Activated L2
ENSG00000110906 KCTD10 217763 sc-eQTL 9.19e-02 -0.344 0.203 0.949 B_Activated L2
ENSG00000110921 MVK 121867 sc-eQTL 1.49e-01 0.278 0.192 0.949 B_Activated L2
ENSG00000111229 ARPC3 -755300 sc-eQTL 8.30e-01 0.0332 0.154 0.949 B_Activated L2
ENSG00000111231 GPN3 -774146 sc-eQTL 3.38e-01 0.186 0.193 0.949 B_Activated L2
ENSG00000111237 VPS29 -806989 sc-eQTL 1.74e-01 0.286 0.21 0.949 B_Activated L2
ENSG00000122970 IFT81 -429213 sc-eQTL 3.10e-01 -0.159 0.156 0.949 B_Activated L2
ENSG00000135093 USP30 672033 sc-eQTL 3.90e-01 0.165 0.191 0.949 B_Activated L2
ENSG00000139428 MMAB 121542 sc-eQTL 4.00e-01 0.169 0.201 0.949 B_Activated L2
ENSG00000139433 GLTP -185419 sc-eQTL 2.20e-01 -0.28 0.227 0.949 B_Activated L2
ENSG00000139436 GIT2 -301267 sc-eQTL 2.27e-02 0.478 0.208 0.949 B_Activated L2
ENSG00000139437 TCHP -205142 sc-eQTL 3.33e-01 -0.195 0.201 0.949 B_Activated L2
ENSG00000151148 UBE3B 217720 sc-eQTL 6.79e-01 -0.0894 0.215 0.949 B_Activated L2
ENSG00000174437 ATP2A2 -585634 sc-eQTL 8.00e-01 0.0512 0.202 0.949 B_Activated L2
ENSG00000174456 C12orf76 -378512 sc-eQTL 3.18e-01 0.221 0.22 0.949 B_Activated L2
ENSG00000189046 ALKBH2 601491 sc-eQTL 9.10e-01 0.0233 0.205 0.949 B_Activated L2
ENSG00000196510 ANAPC7 -708608 sc-eQTL 7.87e-01 -0.0556 0.205 0.949 B_Activated L2
ENSG00000196850 PPTC7 -888196 sc-eQTL 2.99e-01 0.217 0.209 0.949 B_Activated L2
ENSG00000204852 TCTN1 -918905 sc-eQTL 7.85e-01 -0.0571 0.209 0.949 B_Activated L2
ENSG00000204856 FAM216A -773293 sc-eQTL 1.22e-01 -0.304 0.196 0.949 B_Activated L2
ENSG00000256262 USP30-AS1 641170 sc-eQTL 7.68e-01 -0.0572 0.194 0.949 B_Activated L2
ENSG00000076248 UNG 597548 sc-eQTL 5.04e-01 0.13 0.194 0.949 CD8_TCM L2
ENSG00000076513 ANKRD13A -304064 sc-eQTL 9.45e-01 -0.0125 0.18 0.949 CD8_TCM L2
ENSG00000076555 ACACB 578527 sc-eQTL 8.74e-01 -0.032 0.202 0.949 CD8_TCM L2
ENSG00000084112 SSH1 837532 sc-eQTL 5.77e-01 0.117 0.21 0.949 CD8_TCM L2
ENSG00000110880 CORO1C 963526 sc-eQTL 6.69e-01 0.0797 0.186 0.949 CD8_TCM L2
ENSG00000110906 KCTD10 217763 sc-eQTL 6.97e-01 -0.0783 0.201 0.949 CD8_TCM L2
ENSG00000110921 MVK 121867 sc-eQTL 9.56e-01 0.0118 0.214 0.949 CD8_TCM L2
ENSG00000111229 ARPC3 -755300 sc-eQTL 1.51e-01 -0.213 0.148 0.949 CD8_TCM L2
ENSG00000111231 GPN3 -774146 sc-eQTL 4.20e-01 -0.166 0.205 0.949 CD8_TCM L2
ENSG00000111237 VPS29 -806989 sc-eQTL 7.97e-01 -0.0559 0.217 0.949 CD8_TCM L2
ENSG00000135093 USP30 672033 sc-eQTL 7.20e-01 0.0741 0.207 0.949 CD8_TCM L2
ENSG00000139428 MMAB 121542 sc-eQTL 8.20e-01 0.0456 0.2 0.949 CD8_TCM L2
ENSG00000139433 GLTP -185419 sc-eQTL 5.55e-01 0.126 0.212 0.949 CD8_TCM L2
ENSG00000139436 GIT2 -301267 sc-eQTL 6.00e-01 0.102 0.194 0.949 CD8_TCM L2
ENSG00000139437 TCHP -205142 sc-eQTL 7.48e-02 0.36 0.201 0.949 CD8_TCM L2
ENSG00000151148 UBE3B 217720 sc-eQTL 2.91e-01 0.23 0.217 0.949 CD8_TCM L2
ENSG00000174437 ATP2A2 -585634 sc-eQTL 7.39e-01 -0.0608 0.182 0.949 CD8_TCM L2
ENSG00000174456 C12orf76 -378512 sc-eQTL 7.33e-01 -0.0747 0.219 0.949 CD8_TCM L2
ENSG00000189046 ALKBH2 601491 sc-eQTL 9.53e-01 -0.0122 0.207 0.949 CD8_TCM L2
ENSG00000196510 ANAPC7 -708608 sc-eQTL 8.79e-01 -0.0319 0.21 0.949 CD8_TCM L2
ENSG00000196850 PPTC7 -888196 sc-eQTL 7.49e-01 -0.0624 0.195 0.949 CD8_TCM L2
ENSG00000204852 TCTN1 -918905 sc-eQTL 1.79e-01 -0.277 0.205 0.949 CD8_TCM L2
ENSG00000204856 FAM216A -773293 sc-eQTL 5.61e-01 -0.117 0.201 0.949 CD8_TCM L2
ENSG00000256262 USP30-AS1 641170 sc-eQTL 4.22e-02 -0.395 0.193 0.949 CD8_TCM L2
ENSG00000076248 UNG 597548 sc-eQTL 9.86e-02 0.424 0.255 0.948 PB L2
ENSG00000076513 ANKRD13A -304064 sc-eQTL 5.72e-01 -0.123 0.217 0.948 PB L2
ENSG00000076555 ACACB 578527 sc-eQTL 8.96e-01 -0.0314 0.239 0.948 PB L2
ENSG00000084112 SSH1 837532 sc-eQTL 5.97e-01 0.141 0.266 0.948 PB L2
ENSG00000110880 CORO1C 963526 sc-eQTL 2.44e-01 -0.304 0.259 0.948 PB L2
ENSG00000110906 KCTD10 217763 sc-eQTL 3.89e-01 0.241 0.278 0.948 PB L2
ENSG00000110921 MVK 121867 sc-eQTL 3.86e-01 -0.227 0.261 0.948 PB L2
ENSG00000111229 ARPC3 -755300 sc-eQTL 4.76e-01 -0.11 0.153 0.948 PB L2
ENSG00000111231 GPN3 -774146 sc-eQTL 4.27e-01 -0.179 0.224 0.948 PB L2
ENSG00000111237 VPS29 -806989 sc-eQTL 6.09e-02 0.358 0.189 0.948 PB L2
ENSG00000122970 IFT81 -429213 sc-eQTL 1.52e-01 0.297 0.206 0.948 PB L2
ENSG00000135093 USP30 672033 sc-eQTL 5.94e-01 0.138 0.258 0.948 PB L2
ENSG00000139428 MMAB 121542 sc-eQTL 8.47e-02 0.432 0.249 0.948 PB L2
ENSG00000139433 GLTP -185419 sc-eQTL 9.91e-01 0.003 0.275 0.948 PB L2
ENSG00000139436 GIT2 -301267 sc-eQTL 8.53e-01 -0.052 0.28 0.948 PB L2
ENSG00000139437 TCHP -205142 sc-eQTL 5.66e-01 0.148 0.258 0.948 PB L2
ENSG00000151148 UBE3B 217720 sc-eQTL 8.23e-01 -0.0594 0.265 0.948 PB L2
ENSG00000174437 ATP2A2 -585634 sc-eQTL 8.38e-01 -0.0353 0.172 0.948 PB L2
ENSG00000174456 C12orf76 -378512 sc-eQTL 9.05e-01 -0.0308 0.256 0.948 PB L2
ENSG00000189046 ALKBH2 601491 sc-eQTL 8.66e-01 0.0461 0.272 0.948 PB L2
ENSG00000196510 ANAPC7 -708608 sc-eQTL 7.65e-01 -0.0742 0.248 0.948 PB L2
ENSG00000196850 PPTC7 -888196 sc-eQTL 3.32e-01 0.244 0.25 0.948 PB L2
ENSG00000204852 TCTN1 -918905 sc-eQTL 3.04e-01 -0.219 0.212 0.948 PB L2
ENSG00000204856 FAM216A -773293 sc-eQTL 8.80e-01 -0.0404 0.267 0.948 PB L2
ENSG00000256262 USP30-AS1 641170 sc-eQTL 1.29e-01 0.382 0.25 0.948 PB L2
ENSG00000076248 UNG 597548 sc-eQTL 9.37e-01 -0.017 0.215 0.945 gdT L2
ENSG00000076513 ANKRD13A -304064 sc-eQTL 2.35e-01 -0.243 0.204 0.945 gdT L2
ENSG00000076555 ACACB 578527 sc-eQTL 4.10e-01 0.18 0.217 0.945 gdT L2
ENSG00000084112 SSH1 837532 sc-eQTL 7.07e-01 -0.0793 0.21 0.945 gdT L2
ENSG00000110880 CORO1C 963526 sc-eQTL 8.35e-01 0.039 0.187 0.945 gdT L2
ENSG00000110906 KCTD10 217763 sc-eQTL 5.79e-01 -0.13 0.234 0.945 gdT L2
ENSG00000110921 MVK 121867 sc-eQTL 9.86e-01 -0.00356 0.203 0.945 gdT L2
ENSG00000111229 ARPC3 -755300 sc-eQTL 3.17e-01 -0.157 0.156 0.945 gdT L2
ENSG00000111231 GPN3 -774146 sc-eQTL 8.39e-01 -0.0454 0.224 0.945 gdT L2
ENSG00000111237 VPS29 -806989 sc-eQTL 1.36e-01 -0.346 0.231 0.945 gdT L2
ENSG00000135093 USP30 672033 sc-eQTL 2.92e-03 0.654 0.216 0.945 gdT L2
ENSG00000139428 MMAB 121542 sc-eQTL 1.84e-01 0.302 0.227 0.945 gdT L2
ENSG00000139433 GLTP -185419 sc-eQTL 2.77e-01 -0.257 0.236 0.945 gdT L2
ENSG00000139436 GIT2 -301267 sc-eQTL 6.07e-01 -0.118 0.228 0.945 gdT L2
ENSG00000139437 TCHP -205142 sc-eQTL 4.23e-02 -0.449 0.219 0.945 gdT L2
ENSG00000151148 UBE3B 217720 sc-eQTL 3.35e-01 -0.217 0.224 0.945 gdT L2
ENSG00000174437 ATP2A2 -585634 sc-eQTL 4.66e-01 -0.154 0.21 0.945 gdT L2
ENSG00000174456 C12orf76 -378512 sc-eQTL 9.62e-01 -0.0108 0.229 0.945 gdT L2
ENSG00000189046 ALKBH2 601491 sc-eQTL 3.97e-01 0.2 0.235 0.945 gdT L2
ENSG00000196510 ANAPC7 -708608 sc-eQTL 7.08e-01 -0.0828 0.22 0.945 gdT L2
ENSG00000196850 PPTC7 -888196 sc-eQTL 7.38e-01 0.0731 0.218 0.945 gdT L2
ENSG00000204852 TCTN1 -918905 sc-eQTL 9.47e-02 0.38 0.226 0.945 gdT L2
ENSG00000204856 FAM216A -773293 sc-eQTL 2.80e-01 -0.242 0.223 0.945 gdT L2
ENSG00000256262 USP30-AS1 641170 sc-eQTL 3.96e-01 0.184 0.216 0.945 gdT L2
ENSG00000076248 UNG 597548 sc-eQTL 1.23e-01 0.294 0.19 0.946 pDC L2
ENSG00000076513 ANKRD13A -304064 sc-eQTL 2.76e-01 -0.237 0.217 0.946 pDC L2
ENSG00000076555 ACACB 578527 sc-eQTL 9.43e-01 -0.0141 0.196 0.946 pDC L2
ENSG00000084112 SSH1 837532 sc-eQTL 6.75e-02 -0.376 0.204 0.946 pDC L2
ENSG00000110880 CORO1C 963526 sc-eQTL 9.21e-01 0.0149 0.15 0.946 pDC L2
ENSG00000110906 KCTD10 217763 sc-eQTL 4.00e-02 -0.472 0.228 0.946 pDC L2
ENSG00000110921 MVK 121867 sc-eQTL 8.71e-01 -0.0314 0.193 0.946 pDC L2
ENSG00000111229 ARPC3 -755300 sc-eQTL 6.11e-02 -0.229 0.122 0.946 pDC L2
ENSG00000111231 GPN3 -774146 sc-eQTL 1.97e-01 -0.267 0.207 0.946 pDC L2
ENSG00000111237 VPS29 -806989 sc-eQTL 4.61e-01 0.136 0.184 0.946 pDC L2
ENSG00000122970 IFT81 -429213 sc-eQTL 7.95e-01 -0.0493 0.189 0.946 pDC L2
ENSG00000135093 USP30 672033 sc-eQTL 9.65e-02 -0.335 0.201 0.946 pDC L2
ENSG00000139428 MMAB 121542 sc-eQTL 7.38e-01 -0.068 0.203 0.946 pDC L2
ENSG00000139433 GLTP -185419 sc-eQTL 3.92e-01 0.163 0.19 0.946 pDC L2
ENSG00000139436 GIT2 -301267 sc-eQTL 8.88e-01 -0.0254 0.179 0.946 pDC L2
ENSG00000139437 TCHP -205142 sc-eQTL 5.15e-02 -0.369 0.188 0.946 pDC L2
ENSG00000151148 UBE3B 217720 sc-eQTL 8.37e-01 0.0452 0.219 0.946 pDC L2
ENSG00000174437 ATP2A2 -585634 sc-eQTL 7.69e-02 -0.363 0.204 0.946 pDC L2
ENSG00000174456 C12orf76 -378512 sc-eQTL 2.42e-01 0.266 0.227 0.946 pDC L2
ENSG00000189046 ALKBH2 601491 sc-eQTL 3.40e-01 -0.188 0.196 0.946 pDC L2
ENSG00000196510 ANAPC7 -708608 sc-eQTL 5.66e-01 0.117 0.203 0.946 pDC L2
ENSG00000196850 PPTC7 -888196 sc-eQTL 1.27e-01 0.303 0.198 0.946 pDC L2
ENSG00000204852 TCTN1 -918905 sc-eQTL 2.37e-01 0.245 0.206 0.946 pDC L2
ENSG00000204856 FAM216A -773293 sc-eQTL 2.84e-01 0.196 0.182 0.946 pDC L2
ENSG00000256262 USP30-AS1 641170 sc-eQTL 7.04e-01 0.0692 0.182 0.946 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111199 TRPV4 -138279 eQTL 0.0107 0.152 0.0595 0.0 0.0 0.0545
ENSG00000204856 FAM216A -773659 eQTL 1.62e-02 0.107 0.0445 0.0 0.0 0.0545

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina